MGE detailed information
MGE type: Genomic_island MGE length: 21814 bp
Accession: NZ_CP097840 Location: 1214252..1236065 Organism: Shigella flexneri strain A Replicon: chromosome
Accession: NZ_CP097840 Location: 1214252..1236065 Organism: Shigella flexneri strain A Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M9382_RS05705 (1209364) | 1209364..1209699 | + | 336 | WP_000626187.1 | universal stress protein UspB | - |
| M9382_RS05710 (1209770) | 1209770..1211269 | - | 1500 | WP_000902779.1 | inorganic phosphate transporter PitA | - |
| M9382_RS05715 (1211501) | 1211501..1212700 | + | 1200 | WP_000439213.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| M9382_RS05720 (1213229) | 1213229..1213926 | + | 698 | WP_227804280.1 | IS1 family transposase | - |
| M9382_RS05725 (1213944) | 1213944..1214236 | - | 293 | Protein_1105 | transposase | - |
| M9382_RS05730 (1214252) | 1214252..1215526 | + | 1275 | WP_005052544.1 | O-antigen ligase family protein | - |
| M9382_RS05735 (1215526) | 1215526..1216200 | + | 675 | WP_000245839.1 | helix-turn-helix transcriptional regulator | - |
| M9382_RS05740 (1216728) | 1216728..1217489 | + | 762 | WP_005090407.1 | Chaperone protein caf1M | VF |
| M9382_RS05745 (1217533) | 1217533..1218612 | + | 1080 | WP_005052551.1 | F1 capsule-anchoring protein | VF |
| M9382_RS05755 (1220187) | 1220187..1221227 | + | 1041 | WP_005065168.1 | F1 capsule-anchoring protein | VF |
| M9382_RS05760 (1221278) | 1221278..1221975 | + | 698 | WP_225620329.1 | IS1 family transposase IS1X2 | Transposase |
| M9382_RS05765 (1221993) | 1221993..1222112 | + | 120 | Protein_1113 | fimbrial biogenesis outer membrane usher protein | - |
| M9382_RS05770 (1222251) | 1222251..1222763 | + | 513 | WP_000751953.1 | hypothetical protein | - |
| M9382_RS05775 (1222870) | 1222870..1223631 | - | 762 | WP_258248464.1 | hypothetical protein | VF |
| M9382_RS05780 (1223877) | 1223877..1224641 | + | 765 | WP_000442142.1 | winged helix-turn-helix domain-containing protein | - |
| M9382_RS05785 (1224634) | 1224634..1225110 | + | 477 | WP_000182502.1 | hypothetical protein | - |
| M9382_RS05790 (1225197) | 1225197..1226195 | - | 999 | Protein_1118 | DUF2776 family protein | - |
| M9382_RS05795 (1226613) | 1226613..1228202 | + | 1590 | WP_000643692.1 | DUF4049 domain-containing protein | - |
| M9382_RS05800 (1228464) | 1228464..1230086 | + | 1623 | WP_005065086.1 | DUF4049 domain-containing protein | - |
| M9382_RS05805 (1230276) | 1230276..1230389 | + | 114 | WP_001296785.1 | protein YhiY | - |
| M9382_RS05810 (1230452) | 1230452..1231519 | + | 1068 | WP_000361470.1 | HlyD family secretion protein | - |
| M9382_RS05815 (1231516) | 1231516..1234251 | + | 2736 | WP_000149172.1 | Ribosome-associated ATPase | VF |
| M9382_RS05820 (1234251) | 1234251..1235375 | + | 1125 | WP_001216257.1 | ABC transporter permease | - |
| M9382_RS05825 (1235434) | 1235434..1235709 | + | 276 | WP_025760846.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| M9382_RS05830 (1235706) | 1235706..1236065 | + | 360 | WP_000593555.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| M9382_RS05835 (1236185) | 1236185..1236586 | - | 402 | WP_001190062.1 | nickel-responsive transcriptional regulator NikR | - |
| M9382_RS05840 (1236592) | 1236592..1237398 | - | 807 | WP_000173660.1 | nickel import ATP-binding protein NikE | - |
| M9382_RS05845 (1237395) | 1237395..1238159 | - | 765 | WP_001136248.1 | nickel import ATP-binding protein NikD | - |
| M9382_RS05850 (1238159) | 1238159..1238992 | - | 834 | WP_001008974.1 | nickel ABC transporter permease subunit NikC | - |
| M9382_RS05855 (1238989) | 1238989..1239933 | - | 945 | WP_000947076.1 | nickel ABC transporter permease subunit NikB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Genomic island | TA120378 | NZ_CP037923 | 4222298..4243335 | 0.002 |