MGE detailed information
MGE type: Prophage MGE length: 13684 bp
Accession: NZ_CP097834 Location: 1161108..1174791 Organism: Shigella flexneri strain C Replicon: chromosome
Accession: NZ_CP097834 Location: 1161108..1174791 Organism: Shigella flexneri strain C Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M9379_RS05860 (1157621) | 1157621..1158367 | + | 747 | WP_005050098.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| M9379_RS05865 (1158456) | 1158456..1159142 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| M9379_RS05870 (1159320) | 1159320..1159523 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| M9379_RS05875 (1159559) | 1159559..1161019 | - | 1461 | WP_000527804.1 | mannitol dehydrogenase family protein | - |
| M9379_RS05880 (1161108) | 1161108..1162127 | - | 1020 | Protein_1145 | MHS family MFS transporter YdfJ | - |
| M9379_RS05885 (1162189) | 1162189..1163345 | + | 1157 | WP_094081493.1 | IS3 family transposase IS600 | Transposase |
| M9379_RS05890 (1163370) | 1163370..1163549 | - | 180 | WP_000372594.1 | class II holin family protein | - |
| M9379_RS05895 (1163699) | 1163699..1163860 | - | 162 | WP_001323614.1 | hypothetical protein | - |
| M9379_RS05900 (1163860) | 1163860..1164045 | - | 186 | Protein_1149 | DUF1737 domain-containing protein | - |
| M9379_RS05905 (1164305) | 1164305..1164640 | + | 336 | WP_000871291.1 | anti-adapter protein IraM | - |
| M9379_RS05910 (1164921) | 1164921..1165029 | - | 109 | Protein_1151 | DUF3927 family protein | - |
| M9379_RS05925 (1165950) | 1165950..1166771 | - | 822 | WP_000762884.1 | antitermination protein | - |
| M9379_RS05930 (1166786) | 1166786..1167142 | - | 357 | WP_000904111.1 | RusA family crossover junction endodeoxyribonuclease | - |
| M9379_RS05935 (1167155) | 1167155..1168204 | - | 1050 | WP_001265249.1 | DUF968 domain-containing protein | - |
| M9379_RS05940 (1168206) | 1168206..1168484 | - | 279 | Protein_1155 | hypothetical protein | - |
| M9379_RS05945 (1168587) | 1168587..1168802 | - | 216 | WP_000980986.1 | hypothetical protein | - |
| M9379_RS05950 (1169020) | 1169020..1169175 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| M9379_RS05955 (1169247) | 1169247..1169534 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| M9379_RS05960 (1169534) | 1169534..1169773 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| M9379_RS05965 (1169798) | 1169798..1170103 | + | 306 | WP_071818640.1 | hypothetical protein | - |
| M9379_RS05970 (1170100) | 1170100..1170978 | - | 879 | Protein_1161 | IS3 family transposase ISSd1 | Transposase |
| M9379_RS05980 (1171750) | 1171750..1172178 | + | 429 | Protein_1163 | Type 1 fimbrin D-mannose specific adhesin | VF |
| M9379_RS05985 (1172512) | 1172512..1174791 | + | 2280 | WP_000726665.1 | acid resistance putative oxidoreductase YdeP | - |
| M9379_RS05990 (1175039) | 1175039..1175242 | + | 204 | WP_000543383.1 | two-component system connector SafA | - |
| M9379_RS05995 (1175310) | 1175310..1176071 | + | 762 | WP_000060475.1 | acid stress response transcriptional regulator YdeO | - |
| M9379_RS06000 (1176473) | 1176473..1176619 | + | 147 | Protein_1167 | sulfatase | - |
| M9379_RS06010 (1177386) | 1177386..1177865 | - | 480 | Protein_1169 | cupin domain-containing protein | - |
| M9379_RS06015 (1178181) | 1178181..1178945 | + | 765 | WP_000692136.1 | electron transfer flavoprotein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Prophage | TA120372 | NZ_CP037923 | 1629251..1643278 | 0.003 |