MGE detailed information
MGE type: Prophage MGE length: 18796 bp
Accession: NZ_CP097831 Location: 3205139..3223934 Organism: Shigella flexneri strain D Replicon: chromosome
Accession: NZ_CP097831 Location: 3205139..3223934 Organism: Shigella flexneri strain D Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M9381_RS15805 (3201652) | 3201652..3202398 | + | 747 | WP_005050098.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| M9381_RS15810 (3202487) | 3202487..3203173 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| M9381_RS15815 (3203351) | 3203351..3203554 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| M9381_RS15820 (3203590) | 3203590..3205050 | - | 1461 | WP_000527804.1 | mannitol dehydrogenase family protein | - |
| M9381_RS15825 (3205139) | 3205139..3206158 | - | 1020 | Protein_3076 | MHS family MFS transporter YdfJ | - |
| M9381_RS15830 (3206220) | 3206220..3207376 | + | 1157 | WP_094081493.1 | IS3 family transposase IS600 | Transposase |
| M9381_RS15835 (3207401) | 3207401..3207580 | - | 180 | WP_000372594.1 | class II holin family protein | - |
| M9381_RS15840 (3207730) | 3207730..3207891 | - | 162 | WP_001323614.1 | hypothetical protein | - |
| M9381_RS15845 (3207891) | 3207891..3208076 | - | 186 | Protein_3080 | DUF1737 domain-containing protein | - |
| M9381_RS15850 (3208336) | 3208336..3208671 | + | 336 | WP_000871291.1 | anti-adapter protein IraM | - |
| M9381_RS15855 (3208952) | 3208952..3209060 | - | 109 | Protein_3082 | DUF3927 family protein | - |
| M9381_RS15870 (3209981) | 3209981..3210802 | - | 822 | WP_000762884.1 | antitermination protein | - |
| M9381_RS15875 (3210817) | 3210817..3211173 | - | 357 | WP_000904111.1 | RusA family crossover junction endodeoxyribonuclease | - |
| M9381_RS15880 (3211186) | 3211186..3212235 | - | 1050 | WP_001265249.1 | DUF968 domain-containing protein | - |
| M9381_RS15885 (3212237) | 3212237..3212515 | - | 279 | Protein_3086 | hypothetical protein | - |
| M9381_RS15890 (3212618) | 3212618..3212833 | - | 216 | WP_000980986.1 | hypothetical protein | - |
| M9381_RS15895 (3213051) | 3213051..3213206 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| M9381_RS15900 (3213278) | 3213278..3213565 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| M9381_RS15905 (3213565) | 3213565..3213804 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| M9381_RS15910 (3213829) | 3213829..3214134 | + | 306 | WP_071818640.1 | hypothetical protein | - |
| M9381_RS15915 (3214131) | 3214131..3215009 | - | 879 | Protein_3092 | IS3 family transposase ISSd1 | Transposase |
| M9381_RS15925 (3215781) | 3215781..3216209 | + | 429 | Protein_3094 | Type 1 fimbrin D-mannose specific adhesin | VF |
| M9381_RS15930 (3216543) | 3216543..3218822 | + | 2280 | WP_000726665.1 | acid resistance putative oxidoreductase YdeP | - |
| M9381_RS15935 (3219070) | 3219070..3219273 | + | 204 | WP_000543383.1 | two-component system connector SafA | - |
| M9381_RS15940 (3219341) | 3219341..3220102 | + | 762 | WP_000060475.1 | acid stress response transcriptional regulator YdeO | - |
| M9381_RS15945 (3220504) | 3220504..3220650 | + | 147 | Protein_3098 | sulfatase | - |
| M9381_RS15955 (3221417) | 3221417..3221896 | - | 480 | Protein_3100 | cupin domain-containing protein | - |
| M9381_RS15960 (3222212) | 3222212..3222976 | + | 765 | WP_000692136.1 | electron transfer flavoprotein | - |
| M9381_RS15965 (3222996) | 3222996..3223934 | + | 939 | Protein_3102 | electron transfer flavoprotein subunit alpha | - |
| M9381_RS15970 (3223990) | 3223990..3225279 | + | 1290 | WP_001278524.1 | FAD-dependent oxidoreductase | - |
| M9381_RS15975 (3225276) | 3225276..3225569 | + | 294 | WP_000081083.1 | ferredoxin family protein | - |
| M9381_RS15980 (3225626) | 3225626..3227272 | + | 1647 | WP_005050037.1 | medium-chain fatty-acid--CoA ligase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Prophage | TA120372 | NZ_CP037923 | 1629251..1643278 | 0.01 |