MGE detailed information
MGE type: Genomic_island MGE length: 21814 bp
Accession: NZ_CP097831 Location: 1215075..1236888 Organism: Shigella flexneri strain D Replicon: chromosome
Accession: NZ_CP097831 Location: 1215075..1236888 Organism: Shigella flexneri strain D Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M9381_RS05725 (1210187) | 1210187..1210522 | + | 336 | WP_000626187.1 | universal stress protein UspB | - |
| M9381_RS05730 (1210593) | 1210593..1212092 | - | 1500 | WP_000902779.1 | inorganic phosphate transporter PitA | - |
| M9381_RS05735 (1212324) | 1212324..1213523 | + | 1200 | WP_000439213.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| M9381_RS05740 (1214052) | 1214052..1214749 | + | 698 | WP_227804280.1 | IS1 family transposase | - |
| M9381_RS05745 (1214767) | 1214767..1215059 | - | 293 | Protein_1109 | transposase | - |
| M9381_RS05750 (1215075) | 1215075..1216349 | + | 1275 | WP_005052544.1 | O-antigen ligase family protein | - |
| M9381_RS05755 (1216349) | 1216349..1217023 | + | 675 | WP_000245839.1 | helix-turn-helix transcriptional regulator | - |
| M9381_RS05760 (1217551) | 1217551..1218312 | + | 762 | WP_005090407.1 | Chaperone protein caf1M | VF |
| M9381_RS05765 (1218356) | 1218356..1219435 | + | 1080 | WP_005052551.1 | F1 capsule-anchoring protein | VF |
| M9381_RS05775 (1221010) | 1221010..1222050 | + | 1041 | WP_005065168.1 | F1 capsule-anchoring protein | VF |
| M9381_RS05780 (1222101) | 1222101..1222798 | + | 698 | WP_225620329.1 | IS1 family transposase IS1X2 | Transposase |
| M9381_RS05785 (1222816) | 1222816..1222935 | + | 120 | Protein_1117 | fimbrial biogenesis outer membrane usher protein | - |
| M9381_RS05790 (1223074) | 1223074..1223586 | + | 513 | WP_000751953.1 | hypothetical protein | - |
| M9381_RS05795 (1223693) | 1223693..1224454 | - | 762 | WP_258248464.1 | hypothetical protein | VF |
| M9381_RS05800 (1224700) | 1224700..1225464 | + | 765 | WP_000442142.1 | winged helix-turn-helix domain-containing protein | - |
| M9381_RS05805 (1225457) | 1225457..1225933 | + | 477 | WP_000182502.1 | hypothetical protein | - |
| M9381_RS05810 (1226020) | 1226020..1227018 | - | 999 | Protein_1122 | DUF2776 family protein | - |
| M9381_RS05815 (1227436) | 1227436..1229025 | + | 1590 | WP_000643692.1 | DUF4049 domain-containing protein | - |
| M9381_RS05820 (1229287) | 1229287..1230909 | + | 1623 | WP_005065086.1 | DUF4049 domain-containing protein | - |
| M9381_RS05825 (1231099) | 1231099..1231212 | + | 114 | WP_001296785.1 | protein YhiY | - |
| M9381_RS05830 (1231275) | 1231275..1232342 | + | 1068 | WP_000361470.1 | HlyD family secretion protein | - |
| M9381_RS05835 (1232339) | 1232339..1235074 | + | 2736 | WP_000149172.1 | Ribosome-associated ATPase | VF |
| M9381_RS05840 (1235074) | 1235074..1236198 | + | 1125 | WP_001216257.1 | ABC transporter permease | - |
| M9381_RS05845 (1236257) | 1236257..1236532 | + | 276 | WP_025760846.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| M9381_RS05850 (1236529) | 1236529..1236888 | + | 360 | WP_000593555.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| M9381_RS05855 (1237008) | 1237008..1237409 | - | 402 | WP_001190062.1 | nickel-responsive transcriptional regulator NikR | - |
| M9381_RS05860 (1237415) | 1237415..1238221 | - | 807 | WP_000173660.1 | nickel import ATP-binding protein NikE | - |
| M9381_RS05865 (1238218) | 1238218..1238982 | - | 765 | WP_001136248.1 | nickel import ATP-binding protein NikD | - |
| M9381_RS05870 (1238982) | 1238982..1239815 | - | 834 | WP_001008974.1 | nickel ABC transporter permease subunit NikC | - |
| M9381_RS05875 (1239812) | 1239812..1240756 | - | 945 | WP_000947076.1 | nickel ABC transporter permease subunit NikB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Genomic island | TA120378 | NZ_CP037923 | 4222298..4243335 | 0.002 |