MGE detailed information
MGE type: Conjugative plasmid MGE length: 101193 bp
Accession: NZ_CP094989 Location: 1..101193 Organism: Shigella flexneri strain 3160_NCHU22 Replicon: plasmid pS3160_2
Accession: NZ_CP094989 Location: 1..101193 Organism: Shigella flexneri strain 3160_NCHU22 Replicon: plasmid pS3160_2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MT485_RS24615 (46) | 46..1077 | + | 1032 | WP_000907870.1 | plasmid replication initiator RepA | - |
| MT485_RS24620 (1986) | 1986..2255 | + | 270 | WP_046788832.1 | type II toxin-antitoxin system antitoxin YacA | - |
| MT485_RS24625 (2255) | 2255..2365 | + | 111 | Protein_2 | type II toxin-antitoxin system toxin YacB | - |
| MT485_RS24630 (2464) | 2464..3387 | + | 924 | WP_072664724.1 | hypothetical protein | - |
| MT485_RS24635 (3692) | 3692..4396 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| MT485_RS24640 (4449) | 4449..5354 | - | 906 | Protein_5 | IS91 family transposase ISAzo26 | Transposase |
| MT485_RS24645 (5499) | 5499..5996 | + | 498 | WP_001083725.1 | Dihydrofolate reductase | ARG |
| MT485_RS24650 (6108) | 6108..6398 | + | 291 | WP_001336345.1 | DUF1010 domain-containing protein | - |
| MT485_RS24655 (6404) | 6404..6502 | + | 99 | Protein_8 | ANT(3'') family aminoglycoside nucleotidyltransferase | - |
| MT485_RS24660 (6669) | 6669..7877 | - | 1209 | WP_000198533.1 | IS91 family transposase ISSbo1 | Transposase |
| MT485_RS24665 (7858) | 7858..8130 | - | 273 | WP_000019163.1 | hypothetical protein | - |
| MT485_RS24670 (8345) | 8345..9160 | + | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| MT485_RS24675 (9247) | 9247..9489 | + | 243 | Protein_12 | phosphoglucosamine mutase | - |
| MT485_RS24680 (9725) | 9725..10870 | - | 1146 | Protein_13 | IS91 family transposase ISVsa3 | Transposase |
| MT485_RS24685 (11228) | 11228..11497 | + | 270 | WP_000079941.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| MT485_RS24690 (11497) | 11497..11775 | + | 279 | WP_244442846.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| MT485_RS24695 (11815) | 11815..12663 | + | 849 | WP_021265674.1 | 3'-5' exonuclease | - |
| MT485_RS24700 (12780) | 12780..13253 | + | 474 | WP_001334658.1 | hypothetical protein | - |
| MT485_RS24705 (13730) | 13730..13996 | - | 267 | WP_000955263.1 | hypothetical protein | - |
| MT485_RS24710 (13996) | 13996..14490 | - | 495 | WP_001459505.1 | hypothetical protein | - |
| MT485_RS24715 (14546) | 14546..15148 | - | 603 | WP_000517695.1 | ProQ/FINO family protein | - |
| MT485_RS24720 (15502) | 15502..16848 | + | 1347 | WP_001132032.1 | protein YagA | - |
| MT485_RS24725 (17127) | 17127..19007 | + | 1881 | WP_001283341.1 | colicin Ia central receptor-binding domain-containing protein | - |
| MT485_RS24730 (19025) | 19025..19372 | - | 348 | WP_000762570.1 | colicin 1B immunity protein | - |
| MT485_RS24735 (19491) | 19491..19839 | + | 349 | Protein_24 | DUF6404 family protein | - |
| MT485_RS24740 (19859) | 19859..20449 | - | 591 | WP_000194553.1 | hypothetical protein | - |
| MT485_RS24745 (20449) | 20449..20706 | - | 258 | WP_000371888.1 | hypothetical protein | - |
| MT485_RS24750 (21057) | 21057..22058 | + | 1002 | WP_000774874.1 | DUF4238 domain-containing protein | - |
| MT485_RS24755 (22234) | 22234..22578 | - | 345 | WP_000793307.1 | hypothetical protein | - |
| MT485_RS24760 (23077) | 23077..23331 | - | 255 | WP_000678527.1 | hypothetical protein | - |
| MT485_RS24765 (23376) | 23376..24302 | - | 927 | WP_001290416.1 | hypothetical protein | - |
| MT485_RS24770 (24834) | 24834..25247 | + | 414 | WP_000465043.1 | hypothetical protein | - |
| MT485_RS24775 (25249) | 25249..26028 | + | 780 | WP_021537353.1 | site-specific integrase | - |
| MT485_RS24780 (26208) | 26208..26852 | + | 645 | WP_001144036.1 | ParA family protein | - |
| MT485_RS24785 (26939) | 26939..27247 | + | 309 | WP_000030199.1 | hypothetical protein | - |
| MT485_RS24790 (27661) | 27661..28641 | + | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| MT485_RS24795 (28634) | 28634..29050 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| MT485_RS24800 (29052) | 29052..30326 | - | 1275 | WP_000457492.1 | Y-family DNA polymerase | - |
| MT485_RS24805 (30326) | 30326..30763 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| MT485_RS24810 (30760) | 30760..31008 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| MT485_RS24815 (31426) | 31426..32328 | + | 903 | WP_000273918.1 | DUF1281 domain-containing protein | - |
| MT485_RS24820 (32325) | 32325..32636 | + | 312 | WP_010891263.1 | hypothetical protein | - |
| MT485_RS24825 (32713) | 32713..33396 | + | 684 | WP_000086178.1 | DNA methylase | - |
| MT485_RS24830 (33397) | 33397..33618 | + | 222 | WP_001104887.1 | hypothetical protein | - |
| MT485_RS24835 (33578) | 33578..34064 | + | 487 | Protein_44 | DUF1380 family protein | - |
| MT485_RS24840 (34115) | 34115..34885 | + | 771 | WP_001044393.1 | hypothetical protein | - |
| MT485_RS24845 (35303) | 35303..35728 | + | 426 | WP_001198886.1 | antirestriction protein | - |
| MT485_RS24850 (35775) | 35775..36197 | + | 423 | WP_000271729.1 | DUF1380 family protein | - |
| MT485_RS24855 (36194) | 36194..36385 | + | 192 | WP_001027500.1 | hypothetical protein | - |
| MT485_RS24860 (36522) | 36522..36803 | + | 282 | WP_244758399.1 | hypothetical protein | - |
| MT485_RS24865 (37155) | 37155..37682 | + | 528 | WP_001276110.1 | single-stranded DNA-binding protein | - |
| MT485_RS24870 (37740) | 37740..37973 | + | 234 | WP_000006014.1 | DUF905 domain-containing protein | - |
| MT485_RS24875 (38032) | 38032..39990 | + | 1959 | WP_021265661.1 | ParB/RepB/Spo0J family partition protein | - |
| MT485_RS24880 (40045) | 40045..40479 | + | 435 | WP_000845897.1 | conjugation system SOS inhibitor PsiB | - |
| MT485_RS24885 (40476) | 40476..41195 | + | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| MT485_RS24890 (41192) | 41192..41788 | + | 597 | WP_000978012.1 | hypothetical protein | - |
| MT485_RS24895 (42251) | 42251..42751 | + | 501 | WP_000117609.1 | antirestriction protein ArdA | - |
| MT485_RS24900 (43480) | 43480..43914 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| MT485_RS24905 (44006) | 44006..44272 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| MT485_RS24910 (44337) | 44337..45278 | + | 942 | WP_000038339.1 | Recombination-promoting nuclease RpnA | VF |
| MT485_RS24915 (45340) | 45340..45510 | + | 171 | WP_000150325.1 | hypothetical protein | - |
| MT485_RS24920 (45541) | 45541..45792 | - | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| MT485_RS24925 (46372) | 46372..47220 | + | 849 | WP_001077047.1 | DUF4942 domain-containing protein | - |
| MT485_RS24930 (47305) | 47305..47640 | - | 336 | WP_000157098.1 | hypothetical protein | - |
| MT485_RS24935 (47874) | 47874..48206 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| MT485_RS24940 (48217) | 48217..50916 | + | 2700 | WP_024143648.1 | Protein TraI | Relaxase |
| MT485_RS24945 (50953) | 50953..53244 | - | 2292 | WP_001289276.1 | F-type conjugative transfer protein TrbC | - |
| MT485_RS24950 (53237) | 53237..54307 | - | 1071 | WP_000151583.1 | IncI1-type conjugal transfer protein TrbB | - |
| MT485_RS24955 (54326) | 54326..55534 | - | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| - (55714) | 55714..55771 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - (55714) | 55714..55771 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - (55714) | 55714..55771 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - (55714) | 55714..55771 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| MT485_RS24960 (55826) | 55826..55978 | + | 153 | WP_001331364.1 | Hok/Gef family protein | Toxin Detail |
| MT485_RS24965 (56050) | 56050..56301 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| MT485_RS25335 (56800) | 56800..56895 | + | 96 | WP_001303310.1 | DinQ-like type I toxin DqlB | - |
| MT485_RS24975 (56960) | 56960..57136 | - | 177 | WP_001054904.1 | hypothetical protein | - |
| MT485_RS24980 (57528) | 57528..57737 | + | 210 | WP_244758396.1 | HEAT repeat domain-containing protein | - |
| MT485_RS24985 (57809) | 57809..58459 | - | 651 | WP_001178506.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| MT485_RS24990 (58533) | 58533..60701 | - | 2169 | WP_021537350.1 | DotA/TraY family protein | - |
| MT485_RS24995 (60798) | 60798..61382 | - | 585 | WP_001037987.1 | IncI1-type conjugal transfer protein TraX | - |
| MT485_RS25000 (61411) | 61411..62613 | - | 1203 | WP_001189160.1 | IncI1-type conjugal transfer protein TraW | - |
| MT485_RS25005 (62580) | 62580..63194 | - | 615 | WP_000337398.1 | IncI1-type conjugal transfer protein TraV | - |
| MT485_RS25010 (63194) | 63194..66238 | - | 3045 | WP_021265678.1 | IncI1-type conjugal transfer protein TraU | - |
| MT485_RS25015 (66328) | 66328..67128 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| MT485_RS25020 (67112) | 67112..67300 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| MT485_RS25025 (67364) | 67364..67768 | - | 405 | WP_000086958.1 | IncI1-type conjugal transfer protein TraR | - |
| MT485_RS25030 (67819) | 67819..68346 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| MT485_RS25035 (68346) | 68346..69050 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| MT485_RS25040 (69050) | 69050..70339 | - | 1290 | WP_001272003.1 | conjugal transfer protein TraO | - |
| MT485_RS25045 (70342) | 70342..71325 | - | 984 | WP_001191877.1 | hypothetical protein | VF |
| MT485_RS25050 (71336) | 71336..72028 | - | 693 | WP_000138550.1 | DotI/IcmL family type IV secretion protein | - |
| MT485_RS25055 (72025) | 72025..72372 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| MT485_RS25060 (72390) | 72390..76157 | - | 3768 | WP_001141527.1 | DUF5710 domain-containing protein | - |
| MT485_RS25065 (76246) | 76246..76797 | - | 552 | WP_000014583.1 | Phospholipase D | VF |
| MT485_RS25070 (76812) | 76812..77102 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| MT485_RS25075 (77099) | 77099..78247 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| MT485_RS25080 (78244) | 78244..79062 | - | 819 | WP_000646098.1 | hypothetical protein | VF |
| MT485_RS25085 (79059) | 79059..79517 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| MT485_RS25090 (79912) | 79912..80496 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| MT485_RS25095 (80556) | 80556..81758 | - | 1203 | WP_000976351.1 | conjugal transfer protein TraF | - |
| MT485_RS25100 (81843) | 81843..82667 | - | 825 | WP_001238939.1 | conjugal transfer protein TraE | - |
| MT485_RS25105 (82818) | 82818..83972 | - | 1155 | WP_001139957.1 | site-specific integrase | - |
| MT485_RS25110 (85001) | 85001..86206 | - | 1206 | WP_244758397.1 | hypothetical protein | VF |
| MT485_RS25115 (86206) | 86206..86862 | - | 657 | WP_001193553.1 | hypothetical protein | VF |
| MT485_RS25120 (86847) | 86847..87407 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| MT485_RS25125 (87417) | 87417..88031 | - | 615 | WP_000959785.1 | hypothetical protein | VF |
| MT485_RS25130 (88049) | 88049..89146 | - | 1098 | WP_001208805.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| MT485_RS25135 (89159) | 89159..90712 | - | 1554 | WP_244758398.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| MT485_RS25140 (90723) | 90723..91175 | - | 453 | WP_001247334.1 | hypothetical protein | VF |
| MT485_RS25145 (91162) | 91162..92457 | - | 1296 | WP_000752772.1 | hypothetical protein | VF |
| MT485_RS25150 (92450) | 92450..94132 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| MT485_RS25155 (94146) | 94146..94583 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| MT485_RS25160 (94583) | 94583..95650 | - | 1068 | WP_001302629.1 | hypothetical protein | VF |
| MT485_RS25165 (96274) | 96274..96570 | - | 297 | WP_000494779.1 | hypothetical protein | - |
| MT485_RS25170 (96746) | 96746..97000 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| MT485_RS25175 (97162) | 97162..97713 | - | 552 | WP_000744644.1 | hypothetical protein | - |
| MT485_RS25180 (97886) | 97886..98569 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| MT485_RS25185 (98823) | 98823..99356 | - | 534 | WP_001372168.1 | transcription termination/antitermination NusG family protein | - |
| MT485_RS25190 (99798) | 99798..100085 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| MT485_RS25195 (100003) | 100003..100281 | - | 279 | WP_219065241.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|