MGE detailed information
MGE type: Conjugative plasmid MGE length: 89988 bp
Accession: NZ_CP093549 Location: 1..89988 Organism: Escherichia coli strain YL03 Replicon: plasmid unnamed1
Accession: NZ_CP093549 Location: 1..89988 Organism: Escherichia coli strain YL03 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPJ80_RS24520 (46) | 46..1077 | + | 1032 | WP_000907852.1 | plasmid replication initiator RepA | - |
| MPJ80_RS24525 (1981) | 1981..2265 | + | 285 | WP_001178087.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| MPJ80_RS24530 (2265) | 2265..2540 | + | 276 | WP_000421259.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| MPJ80_RS24535 (2646) | 2646..2849 | + | 204 | Protein_3 | hypothetical protein | - |
| MPJ80_RS24540 (3119) | 3119..3385 | - | 267 | WP_000627832.1 | hypothetical protein | - |
| MPJ80_RS24545 (3385) | 3385..3879 | - | 495 | WP_015058884.1 | hypothetical protein | - |
| MPJ80_RS24550 (3935) | 3935..4537 | - | 603 | WP_000521606.1 | ProQ/FINO family protein | - |
| MPJ80_RS24555 (4713) | 4713..5765 | - | 1053 | WP_000655519.1 | hypothetical protein | - |
| MPJ80_RS24560 (5978) | 5978..6568 | - | 591 | WP_001401589.1 | hypothetical protein | - |
| MPJ80_RS24565 (6568) | 6568..6822 | - | 255 | WP_000343106.1 | hypothetical protein | - |
| MPJ80_RS24570 (7390) | 7390..7803 | + | 414 | WP_021513973.1 | hypothetical protein | - |
| MPJ80_RS24575 (7805) | 7805..8584 | + | 780 | WP_001164198.1 | site-specific integrase | - |
| MPJ80_RS24580 (8764) | 8764..9408 | + | 645 | WP_001144036.1 | ParA family protein | - |
| MPJ80_RS24585 (9495) | 9495..9803 | + | 309 | WP_000030199.1 | hypothetical protein | - |
| MPJ80_RS24590 (10217) | 10217..11197 | + | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| MPJ80_RS24595 (11190) | 11190..11606 | + | 417 | WP_252299038.1 | plasmid partitioning/stability family protein | - |
| MPJ80_RS24600 (11608) | 11608..12882 | - | 1275 | WP_015058887.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| MPJ80_RS24605 (12882) | 12882..13319 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| MPJ80_RS24610 (13316) | 13316..13564 | - | 249 | WP_106108372.1 | DinI-like family protein | - |
| MPJ80_RS24615 (13982) | 13982..14884 | + | 903 | WP_001442863.1 | DUF1281 domain-containing protein | - |
| MPJ80_RS24620 (14888) | 14888..15193 | + | 306 | WP_252299037.1 | hypothetical protein | - |
| MPJ80_RS24625 (15269) | 15269..15952 | + | 684 | WP_021513974.1 | DNA methylase | - |
| MPJ80_RS24630 (15953) | 15953..16174 | + | 222 | WP_001104885.1 | hypothetical protein | - |
| MPJ80_RS24635 (16155) | 16155..16621 | + | 467 | Protein_23 | DUF1380 family protein | - |
| MPJ80_RS24640 (16672) | 16672..17442 | + | 771 | WP_001434682.1 | hypothetical protein | - |
| MPJ80_RS24645 (17859) | 17859..18284 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| MPJ80_RS24650 (18331) | 18331..18753 | + | 423 | WP_000271741.1 | DUF1380 family protein | - |
| MPJ80_RS24655 (18750) | 18750..18941 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| MPJ80_RS24660 (19712) | 19712..20239 | + | 528 | WP_001276125.1 | single-stranded DNA-binding protein | - |
| MPJ80_RS24665 (20297) | 20297..20530 | + | 234 | WP_000006024.1 | DUF905 domain-containing protein | - |
| MPJ80_RS24670 (20589) | 20589..22547 | + | 1959 | WP_001145471.1 | ParB/RepB/Spo0J family partition protein | - |
| MPJ80_RS24675 (22602) | 22602..23036 | + | 435 | WP_000845898.1 | conjugation system SOS inhibitor PsiB | - |
| MPJ80_RS24680 (23033) | 23033..23752 | + | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| MPJ80_RS24685 (23749) | 23749..24345 | + | 597 | WP_000978005.1 | hypothetical protein | - |
| MPJ80_RS24690 (24808) | 24808..25308 | + | 501 | WP_000117627.1 | antirestriction protein ArdA | - |
| MPJ80_RS24695 (26037) | 26037..26471 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| MPJ80_RS24700 (26564) | 26564..26830 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| MPJ80_RS24705 (26895) | 26895..27845 | + | 951 | WP_150288845.1 | Recombination-promoting nuclease RpnA | VF |
| MPJ80_RS24710 (27845) | 27845..28090 | + | 246 | WP_001260884.1 | hypothetical protein | - |
| MPJ80_RS24715 (28121) | 28121..28372 | - | 252 | WP_000148286.1 | helix-turn-helix transcriptional regulator | - |
| MPJ80_RS24720 (28952) | 28952..29800 | + | 849 | WP_001077033.1 | DUF4942 domain-containing protein | - |
| MPJ80_RS24725 (29886) | 29886..30221 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| MPJ80_RS24730 (30455) | 30455..30787 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| MPJ80_RS24735 (30798) | 30798..33497 | + | 2700 | WP_012783930.1 | Protein TraI | Relaxase |
| MPJ80_RS24740 (33534) | 33534..35825 | - | 2292 | WP_012783931.1 | F-type conjugative transfer protein TrbC | - |
| MPJ80_RS24745 (35818) | 35818..36888 | - | 1071 | WP_012783932.1 | IncI1-type conjugal transfer protein TrbB | - |
| MPJ80_RS24750 (36907) | 36907..38115 | - | 1209 | WP_001703845.1 | IncI1-type conjugal transfer protein TrbA | - |
| - (38295) | 38295..38352 | - | 58 | NuclAT_1 | - | - |
| - (38295) | 38295..38352 | - | 58 | NuclAT_1 | - | - |
| - (38295) | 38295..38352 | - | 58 | NuclAT_1 | - | - |
| - (38295) | 38295..38352 | - | 58 | NuclAT_1 | - | - |
| MPJ80_RS24755 (38422) | 38422..39507 | - | 1086 | WP_000080543.1 | protein finQ | - |
| - (39716) | 39716..39776 | - | 61 | NuclAT_0 | - | - |
| - (39716) | 39716..39776 | - | 61 | NuclAT_0 | - | - |
| - (39716) | 39716..39776 | - | 61 | NuclAT_0 | - | - |
| - (39716) | 39716..39776 | - | 61 | NuclAT_0 | - | - |
| MPJ80_RS24760 (39828) | 39828..39980 | + | 153 | WP_001387489.1 | Hok/Gef family protein | Toxin Detail |
| MPJ80_RS24765 (40052) | 40052..40303 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| MPJ80_RS24770 (40804) | 40804..40899 | + | 96 | WP_000609148.1 | DinQ-like type I toxin DqlB | - |
| MPJ80_RS24775 (40964) | 40964..41140 | - | 177 | WP_001054900.1 | hypothetical protein | - |
| MPJ80_RS24780 (41532) | 41532..41741 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| MPJ80_RS24785 (41813) | 41813..42475 | - | 663 | WP_012783935.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| MPJ80_RS24790 (42546) | 42546..44714 | - | 2169 | WP_058649949.1 | DotA/TraY family protein | - |
| MPJ80_RS24795 (44811) | 44811..45038 | - | 228 | Protein_55 | IncI1-type conjugal transfer protein TraX | - |
| MPJ80_RS24805 (46349) | 46349..46708 | - | 360 | Protein_57 | IncI1-type conjugal transfer protein TraX | - |
| MPJ80_RS24810 (46737) | 46737..47939 | - | 1203 | WP_001189160.1 | IncI1-type conjugal transfer protein TraW | - |
| MPJ80_RS24815 (47906) | 47906..48520 | - | 615 | WP_000337398.1 | IncI1-type conjugal transfer protein TraV | - |
| MPJ80_RS24820 (48520) | 48520..51564 | - | 3045 | WP_021265678.1 | IncI1-type conjugal transfer protein TraU | - |
| MPJ80_RS24825 (51654) | 51654..52454 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| MPJ80_RS24830 (52438) | 52438..52626 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| MPJ80_RS24835 (52690) | 52690..53094 | - | 405 | WP_000086958.1 | IncI1-type conjugal transfer protein TraR | - |
| MPJ80_RS24840 (53145) | 53145..53672 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| MPJ80_RS24845 (53672) | 53672..54376 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| MPJ80_RS24850 (54376) | 54376..54846 | - | 471 | Protein_66 | conjugal transfer protein TraO | - |
| MPJ80_RS24855 (54902) | 54902..56115 | + | 1214 | WP_182916788.1 | IS3 family transposase IS629 | Transposase |
| MPJ80_RS24860 (56157) | 56157..56978 | - | 822 | Protein_68 | conjugal transfer protein TraO | - |
| MPJ80_RS24865 (56981) | 56981..57964 | - | 984 | WP_001191877.1 | hypothetical protein | VF |
| MPJ80_RS24870 (57975) | 57975..58667 | - | 693 | WP_000138550.1 | DotI/IcmL family type IV secretion protein | - |
| MPJ80_RS24875 (58664) | 58664..59011 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| MPJ80_RS24880 (59029) | 59029..62796 | - | 3768 | WP_001141527.1 | DUF5710 domain-containing protein | - |
| MPJ80_RS24885 (62885) | 62885..63436 | - | 552 | WP_000014583.1 | Phospholipase D | VF |
| MPJ80_RS24890 (63451) | 63451..63741 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| MPJ80_RS24895 (63738) | 63738..64886 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| MPJ80_RS24900 (64883) | 64883..65701 | - | 819 | WP_000646098.1 | hypothetical protein | VF |
| MPJ80_RS24905 (65698) | 65698..66156 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| MPJ80_RS24910 (66551) | 66551..67135 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| MPJ80_RS24915 (67195) | 67195..68397 | - | 1203 | WP_000976351.1 | conjugal transfer protein TraF | - |
| MPJ80_RS24920 (68482) | 68482..69306 | - | 825 | WP_001238939.1 | conjugal transfer protein TraE | - |
| MPJ80_RS24925 (69457) | 69457..70611 | - | 1155 | WP_001139957.1 | site-specific integrase | - |
| MPJ80_RS24930 (71916) | 71916..72548 | - | 633 | Protein_82 | hypothetical protein | VF |
| MPJ80_RS24935 (72727) | 72727..73989 | + | 1263 | WP_000608644.1 | IS1380 family transposase ISEcp1 | Transposase |
| MPJ80_RS24940 (74198) | 74198..75001 | - | 804 | Protein_84 | hypothetical protein | VF |
| MPJ80_RS24945 (75001) | 75001..75657 | - | 657 | WP_001193553.1 | hypothetical protein | VF |
| MPJ80_RS24950 (75642) | 75642..76202 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| MPJ80_RS24955 (76212) | 76212..76826 | - | 615 | WP_000959785.1 | hypothetical protein | VF |
| MPJ80_RS24960 (76844) | 76844..77941 | - | 1098 | WP_001208805.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| MPJ80_RS24965 (77954) | 77954..79507 | - | 1554 | WP_000362202.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| MPJ80_RS24970 (79518) | 79518..79970 | - | 453 | WP_001247334.1 | hypothetical protein | VF |
| MPJ80_RS24975 (79957) | 79957..81252 | - | 1296 | WP_000752772.1 | hypothetical protein | VF |
| MPJ80_RS24980 (81245) | 81245..82927 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| MPJ80_RS24985 (82941) | 82941..83378 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| MPJ80_RS24990 (83378) | 83378..84445 | - | 1068 | WP_001302629.1 | hypothetical protein | VF |
| MPJ80_RS24995 (85069) | 85069..85365 | - | 297 | WP_000494779.1 | hypothetical protein | - |
| MPJ80_RS25000 (85541) | 85541..85795 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| MPJ80_RS25005 (85957) | 85957..86508 | - | 552 | WP_000744644.1 | hypothetical protein | - |
| MPJ80_RS25010 (86681) | 86681..87364 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| MPJ80_RS25015 (87618) | 87618..88151 | - | 534 | WP_001372168.1 | transcription termination/antitermination NusG family protein | - |
| MPJ80_RS25020 (88593) | 88593..88880 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| MPJ80_RS25025 (88798) | 88798..89076 | - | 279 | WP_219065241.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|