MGE detailed information
MGE type: Genomic_island MGE length: 10023 bp
Accession: NZ_CP092033 Location: 517678..527700 Organism: Lacticaseibacillus rhamnosus strain VHProbi Y39 Replicon: chromosome
Accession: NZ_CP092033 Location: 517678..527700 Organism: Lacticaseibacillus rhamnosus strain VHProbi Y39 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LT346_RS02420 (LT346_02420) | 513242..513610 | - | 369 | WP_005686376.1 | dihydroxyacetone kinase phosphoryl donor subunit DhaM | - |
| LT346_RS02425 (LT346_02425) | 513759..514340 | - | 582 | WP_005691622.1 | dihydroxyacetone kinase subunit DhaL | - |
| LT346_RS02430 (LT346_02430) | 514327..515346 | - | 1020 | WP_019728427.1 | dihydroxyacetone kinase subunit DhaK | - |
| LT346_RS02435 (LT346_02435) | 515539..515967 | - | 429 | WP_005691626.1 | OsmC family protein | - |
| LT346_RS02440 (LT346_02440) | 516497..517186 | + | 690 | WP_005691628.1 | rhomboid family intramembrane serine protease | - |
| LT346_RS02445 (LT346_02445) | 517678..518286 | - | 609 | WP_005691630.1 | hypothetical protein | - |
| LT346_RS02450 (LT346_02450) | 518733..519608 | + | 876 | WP_025014074.1 | Rgg/GadR/MutR family transcriptional regulator | - |
| LT346_RS02455 (LT346_02455) | 519851..521266 | - | 1416 | WP_005691634.1 | exonuclease domain-containing protein | - |
| LT346_RS02460 (LT346_02460) | 521490..521675 | - | 186 | WP_005691636.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin Detail |
| LT346_RS02465 (LT346_02465) | 521703..521975 | - | 273 | WP_014571130.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| LT346_RS02470 (LT346_02470) | 522537..522785 | + | 249 | WP_005691639.1 | hypothetical protein | - |
| LT346_RS02475 (LT346_02475) | 523028..523321 | + | 294 | WP_005684269.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| LT346_RS02480 (LT346_02480) | 523403..524566 | + | 1164 | WP_005691640.1 | MFS transporter | - |
| LT346_RS02485 (LT346_02485) | 524720..525295 | + | 576 | WP_014571131.1 | DNA-3-methyladenine glycosylase I | - |
| LT346_RS02490 (LT346_02490) | 525438..526034 | + | 597 | WP_005691643.1 | IS607 family transposase ISCbt3 | Transposase |
| LT346_RS02495 (LT346_02495) | 526069..527250 | + | 1182 | WP_014571132.1 | RNA-guided endonuclease TnpB family protein | - |
| LT346_RS02500 (LT346_02500) | 527482..527700 | + | 219 | WP_005691646.1 | hypothetical protein | - |
| LT346_RS02505 (LT346_02505) | 527960..529375 | + | 1416 | WP_019728464.1 | IS5-like element ISLrh2 family transposase | - |
| LT346_RS02510 (LT346_02510) | 529410..530291 | - | 882 | WP_005684263.1 | class II fructose-1,6-bisphosphate aldolase | - |
| LT346_RS02515 (LT346_02515) | 530880..532613 | + | 1734 | WP_005691647.1 | pyruvate oxidase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Lactobacillus rhamnosus Lc 705 | Genomic island | TA6139 | NC_013199 | 509097..519119 | 0 | |
| Lactobacillus rhamnosus ATCC 8530 | Genomic island | TA6144, TA6239 | NC_017491 | 509273..519295 | 0 |