MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 40699 bp
Accession: NZ_CP091758 Location: 1..40699 Organism: Escherichia coli strain LC-1302-2020 Replicon: plasmid p2-LC-1302-2020
Accession: NZ_CP091758 Location: 1..40699 Organism: Escherichia coli strain LC-1302-2020 Replicon: plasmid p2-LC-1302-2020
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L6507_RS25935 (1) | 1..597 | + | 597 | Protein_0 | incFII family plasmid replication initiator RepA | - |
| L6507_RS25940 (649) | 649..1353 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| L6507_RS25945 (1342) | 1342..1686 | + | 345 | Protein_2 | incFII family plasmid replication initiator RepA | - |
| L6507_RS25950 (2606) | 2606..2869 | - | 264 | Protein_3 | IS91 family transposase | - |
| L6507_RS25955 (2924) | 2924..4137 | + | 1214 | WP_136952279.1 | IS3 family transposase IS629 | Transposase |
| L6507_RS25960 (4179) | 4179..4847 | + | 669 | Protein_5 | DUF4113 domain-containing protein | - |
| L6507_RS25965 (4984) | 4984..5955 | - | 972 | WP_001233385.1 | ParB family protein | - |
| L6507_RS25970 (5952) | 5952..7157 | - | 1206 | WP_001442122.1 | Plasmid partition protein A | VF |
| L6507_RS25975 (7778) | 7778..8509 | + | 732 | WP_000504263.1 | replication initiation protein | - |
| L6507_RS25980 (9189) | 9189..9995 | - | 807 | WP_000016968.1 | site-specific integrase | - |
| L6507_RS25985 (9996) | 9996..10301 | - | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| L6507_RS25990 (10303) | 10303..10521 | - | 219 | WP_000813630.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| L6507_RS25995 (11116) | 11116..11385 | + | 270 | WP_001554929.1 | hypothetical protein | - |
| L6507_RS26000 (11373) | 11373..11969 | + | 597 | WP_001554928.1 | hypothetical protein | - |
| L6507_RS26005 (11987) | 11987..12334 | - | 348 | WP_021573051.1 | DUF6404 family protein | - |
| L6507_RS26010 (12445) | 12445..12792 | + | 348 | WP_001554926.1 | colicin E1 family microcin immunity protein | - |
| L6507_RS26015 (12810) | 12810..13100 | - | 291 | WP_072184881.1 | colicin-like pore-forming protein | - |
| L6507_RS26020 (13448) | 13448..13636 | + | 189 | WP_000744815.1 | hypothetical protein | - |
| L6507_RS26025 (13764) | 13764..15152 | + | 1389 | WP_001554924.1 | hypothetical protein | - |
| L6507_RS26030 (15152) | 15152..15835 | + | 684 | WP_000200414.1 | lasso peptide biosynthesis B2 protein | - |
| L6507_RS26035 (15835) | 15835..17559 | + | 1725 | WP_001554923.1 | ATM1-type heavy metal exporter | VF |
| L6507_RS26040 (18337) | 18337..18723 | - | 387 | WP_000673985.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| L6507_RS26045 (18720) | 18720..18944 | - | 225 | WP_000493532.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| L6507_RS26050 (19229) | 19229..20026 | - | 798 | WP_000544830.1 | IS21 family transposase IS21 | Transposase |
| L6507_RS26055 (20026) | 20026..21198 | - | 1173 | WP_000952372.1 | IS21 family transposase IS21 | Transposase |
| L6507_RS26060 (22025) | 22025..22774 | + | 750 | WP_001336444.1 | polymer-forming cytoskeletal protein | - |
| L6507_RS26065 (23460) | 23460..24020 | - | 561 | WP_230554499.1 | Serine protease EspP | VF |
| L6507_RS26070 (24135) | 24135..24386 | + | 252 | Protein_27 | IS3 family transposase IS911 | Transposase |
| L6507_RS26075 (24444) | 24444..25100 | + | 657 | Protein_28 | IS30 family transposase IS30D | Transposase |
| L6507_RS26080 (25189) | 25189..25554 | + | 366 | WP_000091308.1 | hypothetical protein | - |
| L6507_RS26085 (25554) | 25554..26741 | + | 1188 | WP_147675953.1 | IS91 family transposase ISEc37 | Transposase |
| L6507_RS26090 (26927) | 26927..27094 | + | 168 | Protein_31 | hypothetical protein | - |
| L6507_RS26095 (27110) | 27110..27691 | + | 582 | WP_225090537.1 | DUF2971 domain-containing protein | - |
| L6507_RS26105 (29033) | 29033..29317 | - | 285 | Protein_34 | IS66 family transposase ISEc43 | Transposase |
| L6507_RS26110 (29404) | 29404..31488 | + | 2085 | Protein_35 | type IV conjugative transfer system coupling protein TraD | - |
| L6507_RS26115 (31488) | 31488..36758 | + | 5271 | WP_241454055.1 | Multifunctional conjugation protein TraI | Relaxase |
| L6507_RS26120 (36778) | 36778..37524 | + | 747 | WP_000205718.1 | conjugal transfer pilus acetylase TraX | - |
| L6507_RS26125 (37579) | 37579..38139 | + | 561 | WP_000139325.1 | fertility inhibition protein FinO | - |
| L6507_RS26130 (38271) | 38271..38483 | + | 213 | WP_001301409.1 | ANR family transcriptional regulator | - |
| L6507_RS26135 (38729) | 38729..38815 | + | 87 | Protein_40 | endonuclease | - |
| L6507_RS26140 (38996) | 38996..39307 | - | 312 | WP_000802277.1 | hypothetical protein | - |
| - (39603) | 39603..39664 | - | 62 | NuclAT_0 | - | - |
| - (39603) | 39603..39664 | - | 62 | NuclAT_0 | - | - |
| - (39603) | 39603..39664 | - | 62 | NuclAT_0 | - | - |
| - (39603) | 39603..39664 | - | 62 | NuclAT_0 | - | - |
| L6507_RS26145 (39708) | 39708..39857 | + | 150 | WP_001312851.1 | Hok/Gef family protein | Toxin Detail |
| L6507_RS26150 (40141) | 40141..40398 | + | 258 | WP_000083845.1 | replication regulatory protein RepA | - |
| L6507_RS26155 (40501) | 40501..40687 | + | 187 | Protein_44 | protein CopA/IncA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|