MGE detailed information
MGE type: Genomic_island MGE length: 14259 bp
Accession: NZ_CP091756 Location: 4530190..4544448 Organism: Escherichia coli strain LC-1302-2020 Replicon: chromosome
Accession: NZ_CP091756 Location: 4530190..4544448 Organism: Escherichia coli strain LC-1302-2020 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L6507_RS22020 (4526327) | 4526327..4526674 | - | 348 | WP_000612617.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| L6507_RS22025 (4526671) | 4526671..4527075 | - | 405 | WP_000839179.1 | transposase | - |
| L6507_RS22030 (4527161) | 4527161..4527394 | + | 234 | WP_001119719.1 | DUF905 family protein | - |
| L6507_RS22035 (4527494) | 4527494..4528312 | + | 819 | WP_001234642.1 | DUF932 domain-containing protein | - |
| L6507_RS22040 (4528367) | 4528367..4528852 | + | 486 | WP_000849596.1 | antirestriction protein | - |
| L6507_RS22045 (4528868) | 4528868..4529344 | + | 477 | WP_001186788.1 | RadC family protein | - |
| L6507_RS22050 (4529431) | 4529431..4529652 | + | 222 | WP_000692349.1 | DUF987 domain-containing protein | - |
| L6507_RS22055 (4529732) | 4529732..4530100 | + | 369 | WP_001539669.1 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| L6507_RS22060 (4530190) | 4530190..4530342 | + | 153 | Protein_4312 | toxin | - |
| L6507_RS22070 (4531673) | 4531673..4531903 | + | 231 | Protein_4314 | toxin | - |
| L6507_RS22075 (4531900) | 4531900..4532388 | + | 489 | WP_000777672.1 | DUF5983 family protein | - |
| L6507_RS22080 (4532400) | 4532400..4532597 | + | 198 | WP_000839238.1 | DUF957 domain-containing protein | - |
| L6507_RS22085 (4532690) | 4532690..4533556 | + | 867 | WP_001290180.1 | DUF4942 domain-containing protein | - |
| L6507_RS22090 (4533628) | 4533628..4533891 | + | 264 | WP_001143297.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| L6507_RS22095 (4533888) | 4533888..4534214 | + | 327 | WP_000779482.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| L6507_RS22100 (4535098) | 4535098..4536636 | + | 1539 | WP_001187173.1 | lysine decarboxylation/transport transcriptional activator CadC | - |
| L6507_RS22105 (4537001) | 4537001..4538335 | + | 1335 | WP_000092909.1 | cadaverine/lysine antiporter | - |
| L6507_RS22110 (4538415) | 4538415..4540562 | + | 2148 | WP_001295383.1 | lysine decarboxylase CadA | - |
| L6507_RS22115 (4540621) | 4540621..4542078 | + | 1458 | WP_000856829.1 | dipeptide/tripeptide permease DtpC | - |
| L6507_RS22120 (4542315) | 4542315..4543832 | + | 1518 | WP_001295074.1 | lysine--tRNA ligase | - |
| L6507_RS22125 (4543951) | 4543951..4544124 | - | 174 | WP_001173343.1 | type V toxin-antitoxin system toxin GhoT | Toxin Detail |
| L6507_RS22130 (4544152) | 4544152..4544448 | - | 297 | WP_000398619.1 | type V toxin-antitoxin system endoribonuclease antitoxin GhoS | Antitoxin Detail |
| L6507_RS22135 (4544675) | 4544675..4544947 | - | 273 | WP_000405651.1 | GNAT family N-acetyltransferase | - |
| L6507_RS22140 (4544959) | 4544959..4545189 | - | 231 | WP_000371704.1 | 4Fe-4S mono-cluster protein YjdI | - |
| L6507_RS22145 (4545370) | 4545370..4547001 | + | 1632 | WP_001216477.1 | sensor histidine kinase | - |
| L6507_RS22150 (4546998) | 4546998..4547717 | + | 720 | WP_000611288.1 | two-component system response regulator DcuR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20087 | HG738867 | 4238430..4247780 | 0.01 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21458 | NC_007779 | 4357262..4366612 | 0.01 | |
| Escherichia coli BW2952 | Genomic island | TA23874 | NC_012759 | 4289342..4298692 | 0.01 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285032 | NZ_HG738867 | 4238430..4247780 | 0.01 |