MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 127058 bp
Accession: NZ_CP091512 Location: 1292991..1420048 Organism: Vitreoscilla stercoraria strain SAG 1488-6 Replicon: chromosome
Accession: NZ_CP091512 Location: 1292991..1420048 Organism: Vitreoscilla stercoraria strain SAG 1488-6 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LVJ81_RS06330 (LVJ81_06330) | 1288063..1288905 | + | 843 | WP_019957847.1 | RNase adapter RapZ | - |
| LVJ81_RS06335 (LVJ81_06335) | 1288969..1289901 | + | 933 | WP_019957848.1 | ribosome biogenesis GTPase YlqF | - |
| LVJ81_RS06340 (LVJ81_06340) | 1289901..1290452 | + | 552 | WP_019957849.1 | SMC-Scp complex subunit ScpB | - |
| LVJ81_RS06345 (LVJ81_06345) | 1290491..1291660 | + | 1170 | WP_019957850.1 | pseudouridine synthase | - |
| LVJ81_RS06350 (LVJ81_06350) | 1291855..1293126 | + | 1272 | WP_019957851.1 | O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase | - |
| LVJ81_RS06355 (LVJ81_06355) | 1293154..1293363 | + | 210 | WP_019957852.1 | hypothetical protein | - |
| LVJ81_RS06360 (LVJ81_06360) | 1293438..1294559 | - | 1122 | WP_019957853.1 | class I SAM-dependent RNA methyltransferase | - |
| LVJ81_RS06365 (LVJ81_06365) | 1294714..1295934 | + | 1221 | WP_019957854.1 | Prophage integrase IntS ; Integrase | Integrase |
| LVJ81_RS06370 (LVJ81_06370) | 1296354..1297564 | + | 1211 | WP_244802740.1 | IS3 family transposase ISAba19 | Transposase |
| LVJ81_RS06375 (LVJ81_06375) | 1297925..1298158 | + | 234 | WP_019957858.1 | hypothetical protein | - |
| LVJ81_RS06380 (LVJ81_06380) | 1298155..1298520 | + | 366 | WP_019957859.1 | hypothetical protein | - |
| LVJ81_RS06385 (LVJ81_06385) | 1299003..1300604 | + | 1602 | WP_019957861.1 | peptide chain release factor 3 | - |
| LVJ81_RS06390 (LVJ81_06390) | 1300687..1301904 | - | 1218 | WP_019957862.1 | serine/threonine transporter SstT | - |
| LVJ81_RS06395 (LVJ81_06395) | 1302397..1302750 | - | 354 | WP_019957863.1 | hypothetical protein | - |
| LVJ81_RS06400 (LVJ81_06400) | 1302782..1303609 | - | 828 | WP_169708866.1 | zonular occludens toxin domain-containing protein | - |
| LVJ81_RS06405 (LVJ81_06405) | 1303713..1304489 | - | 777 | WP_244802741.1 | Insertion sequence IS5376 putative ATP-binding protein | VF |
| LVJ81_RS06410 (LVJ81_06410) | 1304486..1305502 | - | 1017 | WP_026353722.1 | IS21 family transposase ISAba8 | Transposase |
| LVJ81_RS06415 (LVJ81_06415) | 1305555..1305845 | + | 291 | WP_280520946.1 | Tn3 family transposase TnpR_TnAs2 | Transposase |
| LVJ81_RS06420 (LVJ81_06420) | 1305907..1306254 | + | 348 | WP_019959502.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LVJ81_RS06425 (LVJ81_06425) | 1306256..1306558 | + | 303 | WP_019959501.1 | XRE family transcriptional regulator | Antitoxin Detail |
| LVJ81_RS06430 (LVJ81_06430) | 1306843..1308246 | - | 1404 | WP_019959500.1 | hypothetical protein | - |
| LVJ81_RS06435 (LVJ81_06435) | 1308575..1309807 | - | 1233 | WP_019959499.1 | type II toxin-antitoxin system HipA family toxin | - |
| LVJ81_RS06440 (LVJ81_06440) | 1309804..1310124 | - | 321 | WP_040755970.1 | helix-turn-helix transcriptional regulator | - |
| LVJ81_RS06445 (LVJ81_06445) | 1310407..1311009 | + | 603 | WP_019959497.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| LVJ81_RS06450 (LVJ81_06450) | 1311083..1311385 | - | 303 | WP_019959496.1 | HigA family addiction module antitoxin | - |
| LVJ81_RS06455 (LVJ81_06455) | 1311400..1311678 | - | 279 | WP_019959495.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| LVJ81_RS06460 (LVJ81_06460) | 1311734..1311865 | - | 132 | WP_019959494.1 | IS3 family transposase ISSpi4 | Transposase |
| LVJ81_RS06465 (LVJ81_06465) | 1311930..1313045 | - | 1116 | WP_019959493.1 | Fic family protein | - |
| LVJ81_RS06470 (LVJ81_06470) | 1313262..1313846 | + | 585 | WP_019959492.1 | class I SAM-dependent methyltransferase | - |
| LVJ81_RS06475 (LVJ81_06475) | 1313839..1314288 | + | 450 | WP_019959491.1 | hypothetical protein | - |
| LVJ81_RS06480 (LVJ81_06480) | 1314591..1316393 | + | 1803 | WP_081619597.1 | phosphomethylpyrimidine synthase ThiC | - |
| LVJ81_RS06485 (LVJ81_06485) | 1316524..1319497 | - | 2974 | Protein_1256 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| LVJ81_RS06490 (LVJ81_06490) | 1319842..1320399 | + | 558 | WP_244802708.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| LVJ81_RS06495 (LVJ81_06495) | 1320486..1320773 | + | 288 | WP_019959534.1 | helix-turn-helix domain-containing protein | - |
| LVJ81_RS06500 (LVJ81_06500) | 1321192..1321656 | + | 465 | WP_019959535.1 | hypothetical protein | - |
| LVJ81_RS06505 (LVJ81_06505) | 1322083..1322277 | - | 195 | WP_019959536.1 | hypothetical protein | - |
| LVJ81_RS06510 (LVJ81_06510) | 1322706..1323260 | + | 555 | WP_244802709.1 | AraC family transcriptional regulator | - |
| LVJ81_RS06515 (LVJ81_06515) | 1323261..1324595 | - | 1335 | WP_280520937.1 | 2-isopropylmalate synthase | - |
| LVJ81_RS13130 | 1324618..1324935 | - | 318 | WP_280520938.1 | hypothetical protein | - |
| LVJ81_RS06520 (LVJ81_06520) | 1325292..1325627 | - | 336 | WP_019959539.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| LVJ81_RS06525 (LVJ81_06525) | 1325624..1325878 | - | 255 | WP_019959540.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| LVJ81_RS06530 (LVJ81_06530) | 1325966..1326526 | - | 561 | WP_026353726.1 | Tn3 family transposase TnpR_TnAs2 | Transposase |
| LVJ81_RS06535 (LVJ81_06535) | 1326828..1327787 | + | 960 | WP_019959482.1 | type I-F CRISPR-associated endonuclease Cas1f | - |
| LVJ81_RS06540 (LVJ81_06540) | 1327784..1331155 | + | 3372 | WP_019959483.1 | type I-F CRISPR-associated helicase Cas3f | - |
| LVJ81_RS06545 (LVJ81_06545) | 1331180..1332433 | + | 1254 | WP_019959484.1 | type I-F CRISPR-associated protein Csy1 | - |
| LVJ81_RS06550 (LVJ81_06550) | 1332433..1333317 | + | 885 | WP_019959485.1 | type I-F CRISPR-associated protein Csy2 | - |
| LVJ81_RS06555 (LVJ81_06555) | 1333348..1334361 | + | 1014 | WP_019959486.1 | type I-F CRISPR-associated protein Csy3 | - |
| LVJ81_RS06560 (LVJ81_06560) | 1334364..1334984 | + | 621 | WP_019959487.1 | type I-F CRISPR-associated endoribonuclease Cas6/Csy4 | - |
| LVJ81_RS06565 (LVJ81_06565) | 1339596..1340372 | - | 777 | WP_019959512.1 | IS21 family transposase ISEc57 | Transposase |
| LVJ81_RS06570 (LVJ81_06570) | 1340369..1341385 | - | 1017 | WP_026353722.1 | IS21 family transposase ISAba8 | Transposase |
| LVJ81_RS06575 (LVJ81_06575) | 1341444..1341698 | - | 255 | WP_019959468.1 | zonular occludens toxin domain-containing protein | - |
| LVJ81_RS06580 (LVJ81_06580) | 1341695..1341988 | - | 294 | WP_019959467.1 | DUF2523 family protein | - |
| LVJ81_RS06585 (LVJ81_06585) | 1341998..1343407 | - | 1410 | WP_019959466.1 | IgG-binding virulence factor TspB family protein | - |
| LVJ81_RS06590 (LVJ81_06590) | 1343522..1343797 | - | 276 | WP_019959464.1 | hypothetical protein | - |
| LVJ81_RS06595 (LVJ81_06595) | 1343825..1344025 | - | 201 | WP_026353713.1 | major capsid protein | - |
| LVJ81_RS06600 (LVJ81_06600) | 1344072..1344242 | - | 171 | WP_019959462.1 | hypothetical protein | - |
| LVJ81_RS06605 (LVJ81_06605) | 1344355..1344693 | - | 339 | WP_019959461.1 | hypothetical protein | - |
| LVJ81_RS06610 (LVJ81_06610) | 1344703..1346049 | - | 1347 | WP_081619594.1 | replication initiation factor domain-containing protein | - |
| LVJ81_RS06615 (LVJ81_06615) | 1346030..1346338 | - | 309 | WP_155970646.1 | hypothetical protein | - |
| LVJ81_RS06620 (LVJ81_06620) | 1346335..1346538 | - | 204 | WP_019959459.1 | hypothetical protein | - |
| LVJ81_RS06625 (LVJ81_06625) | 1346668..1346997 | + | 330 | WP_019959458.1 | hypothetical protein | - |
| LVJ81_RS06630 (LVJ81_06630) | 1347187..1347732 | + | 546 | WP_019959457.1 | NUDIX hydrolase | - |
| LVJ81_RS06635 (LVJ81_06635) | 1347794..1348972 | - | 1179 | WP_019959456.1 | MFS transporter | - |
| LVJ81_RS06640 (LVJ81_06640) | 1349064..1349672 | + | 609 | WP_019959455.1 | TetR/AcrR family transcriptional regulator | - |
| LVJ81_RS06645 (LVJ81_06645) | 1349825..1350190 | - | 366 | WP_019959454.1 | hypothetical protein | - |
| LVJ81_RS06650 (LVJ81_06650) | 1350193..1351620 | - | 1428 | WP_040755959.1 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | - |
| LVJ81_RS06655 (LVJ81_06655) | 1351871..1352905 | - | 1035 | WP_019959451.1 | HTH-type transcriptional regulator CdhR | VF |
| LVJ81_RS06660 (LVJ81_06660) | 1353044..1353691 | - | 648 | WP_019959450.1 | sarcosine oxidase subunit gamma family protein | - |
| LVJ81_RS06665 (LVJ81_06665) | 1353684..1356710 | - | 3027 | WP_019959449.1 | sarcosine oxidase subunit alpha family protein | - |
| LVJ81_RS06670 (LVJ81_06670) | 1356707..1357018 | - | 312 | WP_019959448.1 | sarcosine oxidase subunit delta | - |
| LVJ81_RS06675 (LVJ81_06675) | 1357027..1358298 | - | 1272 | WP_019959447.1 | sarcosine oxidase subunit beta family protein | - |
| LVJ81_RS06680 (LVJ81_06680) | 1358534..1359397 | + | 864 | WP_019959446.1 | formyltetrahydrofolate deformylase | - |
| LVJ81_RS06685 (LVJ81_06685) | 1359430..1360698 | + | 1269 | WP_244802710.1 | serine hydroxymethyltransferase | - |
| LVJ81_RS06690 (LVJ81_06690) | 1360966..1361613 | - | 648 | WP_019959398.1 | adenylate kinase | - |
| LVJ81_RS06695 (LVJ81_06695) | 1361701..1362462 | - | 762 | WP_019959397.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | VF |
| LVJ81_RS06700 (LVJ81_06700) | 1362466..1362642 | - | 177 | WP_019959396.1 | Trm112 family protein | - |
| LVJ81_RS06705 (LVJ81_06705) | 1362654..1363670 | - | 1017 | WP_019959395.1 | Tetraacyldisaccharide 4'-kinase | VF |
| LVJ81_RS06710 (LVJ81_06710) | 1364011..1364163 | + | 153 | WP_019959394.1 | hypothetical protein | - |
| LVJ81_RS06715 (LVJ81_06715) | 1364602..1365504 | - | 903 | WP_026353701.1 | HTH-type transcriptional regulator PgrR | VF |
| LVJ81_RS06720 (LVJ81_06720) | 1365686..1366039 | - | 354 | WP_019959391.1 | hypothetical protein | - |
| LVJ81_RS06725 (LVJ81_06725) | 1366450..1367250 | + | 801 | WP_280520939.1 | DUF2520 domain-containing protein | - |
| LVJ81_RS06730 (LVJ81_06730) | 1367353..1368615 | + | 1263 | WP_019959389.1 | D-serine ammonia-lyase | - |
| LVJ81_RS06735 (LVJ81_06735) | 1368954..1369496 | + | 543 | WP_019959388.1 | hypothetical protein | - |
| LVJ81_RS06740 (LVJ81_06740) | 1369790..1370752 | - | 963 | WP_026353700.1 | Transcriptional activator NphR | VF |
| LVJ81_RS06745 (LVJ81_06745) | 1370828..1372909 | - | 2082 | WP_019959386.1 | hydantoinase/oxoprolinase family protein | - |
| LVJ81_RS06750 (LVJ81_06750) | 1372931..1374697 | - | 1767 | WP_019959385.1 | hydantoinase B/oxoprolinase family protein | - |
| LVJ81_RS06755 (LVJ81_06755) | 1375017..1375169 | + | 153 | WP_019959384.1 | hypothetical protein | - |
| LVJ81_RS06760 (LVJ81_06760) | 1375170..1376177 | - | 1008 | WP_019959383.1 | cytochrome d ubiquinol oxidase subunit II | - |
| LVJ81_RS06765 (LVJ81_06765) | 1376188..1377588 | - | 1401 | WP_019959382.1 | cytochrome ubiquinol oxidase subunit I | - |
| LVJ81_RS06770 (LVJ81_06770) | 1377737..1378963 | + | 1227 | WP_019959381.1 | HAMP domain-containing sensor histidine kinase | - |
| LVJ81_RS06775 (LVJ81_06775) | 1378960..1379493 | + | 534 | WP_019959380.1 | response regulator | - |
| LVJ81_RS06780 (LVJ81_06780) | 1380044..1381033 | + | 990 | WP_244802711.1 | helix-turn-helix transcriptional regulator | - |
| LVJ81_RS06785 (LVJ81_06785) | 1381159..1383297 | + | 2139 | WP_019959378.1 | TonB-dependent receptor | - |
| LVJ81_RS06790 (LVJ81_06790) | 1383306..1384532 | + | 1227 | WP_019959377.1 | MFS transporter | - |
| LVJ81_RS06795 (LVJ81_06795) | 1384522..1385619 | + | 1098 | WP_019959376.1 | siderophore-interacting protein | - |
| LVJ81_RS06800 (LVJ81_06800) | 1385977..1386627 | - | 651 | WP_019959375.1 | HAD-IA family hydrolase | - |
| LVJ81_RS06805 (LVJ81_06805) | 1386636..1387487 | - | 852 | WP_019959374.1 | ferritin-like domain-containing protein | - |
| LVJ81_RS06810 (LVJ81_06810) | 1387670..1388719 | + | 1050 | WP_019959372.1 | ABC transporter permease subunit | - |
| LVJ81_RS06815 (LVJ81_06815) | 1388719..1389741 | + | 1023 | WP_019959371.1 | ABC transporter permease | - |
| LVJ81_RS06820 (LVJ81_06820) | 1390041..1391150 | - | 1110 | WP_019959369.1 | hypothetical protein | - |
| LVJ81_RS06825 (LVJ81_06825) | 1391963..1392670 | + | 708 | WP_051083056.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| LVJ81_RS06830 (LVJ81_06830) | 1392667..1393545 | + | 879 | WP_081619587.1 | ABC transporter substrate-binding protein | - |
| LVJ81_RS06835 (LVJ81_06835) | 1393539..1394156 | + | 618 | WP_169708883.1 | Iron(3+)-hydroxamate import system permease protein FhuB | VF |
| LVJ81_RS13135 | 1394081..1395517 | + | 1437 | WP_169708882.1 | Iron(3+)-hydroxamate import system permease protein FhuB | VF |
| LVJ81_RS06845 (LVJ81_06845) | 1395514..1396524 | + | 1011 | WP_051083050.1 | ABC transporter transmembrane domain-containing protein | - |
| LVJ81_RS06850 (LVJ81_06850) | 1396565..1397161 | + | 597 | WP_169708881.1 | ABC transporter ATP-binding/permease protein YojI | VF |
| LVJ81_RS06855 (LVJ81_06855) | 1397182..1398123 | + | 942 | WP_019959365.1 | TonB-dependent receptor plug domain-containing protein | - |
| LVJ81_RS06860 (LVJ81_06860) | 1398006..1398827 | + | 822 | WP_081619584.1 | TonB-dependent receptor | - |
| LVJ81_RS06865 (LVJ81_06865) | 1398899..1400176 | + | 1278 | WP_244802712.1 | IS256 family transposase ISMaq7 | Transposase |
| LVJ81_RS06870 (LVJ81_06870) | 1400199..1400807 | - | 609 | WP_244802713.1 | IS30 family transposase ISAhy3 | Transposase |
| LVJ81_RS06875 (LVJ81_06875) | 1400845..1402098 | - | 1254 | WP_244802714.1 | IS256 family transposase ISMaq7 | Transposase |
| LVJ81_RS06880 (LVJ81_06880) | 1402308..1402481 | + | 174 | WP_257793077.1 | TonB-dependent receptor | - |
| LVJ81_RS06885 (LVJ81_06885) | 1402881..1403675 | - | 795 | WP_019958995.1 | 3-oxoacyl-[acyl-carrier-protein] reductase FabG | VF |
| LVJ81_RS06890 (LVJ81_06890) | 1404137..1405474 | + | 1338 | WP_019958994.1 | aspartate aminotransferase family protein | - |
| LVJ81_RS06895 (LVJ81_06895) | 1405969..1407597 | + | 1629 | WP_019958993.1 | alpha/beta hydrolase-fold protein | - |
| LVJ81_RS06900 (LVJ81_06900) | 1407675..1409906 | + | 2232 | WP_019958992.1 | Ferric enterobactin receptor | VF |
| LVJ81_RS06905 (LVJ81_06905) | 1409942..1410145 | - | 204 | WP_019958991.1 | hypothetical protein | - |
| LVJ81_RS06910 (LVJ81_06910) | 1410230..1411147 | - | 918 | WP_026353645.1 | LysR family transcriptional regulator | - |
| LVJ81_RS06915 (LVJ81_06915) | 1411242..1411733 | - | 492 | WP_019958989.1 | flavin reductase | - |
| LVJ81_RS06920 (LVJ81_06920) | 1411815..1412840 | - | 1026 | WP_019958988.1 | methionine synthase | - |
| LVJ81_RS06925 (LVJ81_06925) | 1412882..1413871 | - | 990 | WP_019958987.1 | DUF1852 family protein | - |
| LVJ81_RS06930 (LVJ81_06930) | 1414063..1415067 | - | 1005 | WP_019958985.1 | ADP-L-glycero-D-manno-heptose-6-epimerase | VF |
| LVJ81_RS06935 (LVJ81_06935) | 1415089..1416051 | - | 963 | WP_019958984.1 | D-beta-D-heptose 7-phosphate kinase | VF |
| LVJ81_RS06940 (LVJ81_06940) | 1416072..1416815 | - | 744 | WP_019958983.1 | orotidine-5'-phosphate decarboxylase | - |
| LVJ81_RS06945 (LVJ81_06945) | 1416821..1417999 | - | 1179 | WP_019958982.1 | lipopolysaccharide assembly protein LapB | - |
| LVJ81_RS06950 (LVJ81_06950) | 1418023..1418364 | - | 342 | WP_081619579.1 | LapA family protein | - |
| LVJ81_RS06955 (LVJ81_06955) | 1418675..1418938 | + | 264 | WP_019958980.1 | hypothetical protein | - |
| LVJ81_RS06960 (LVJ81_06960) | 1418990..1419178 | + | 189 | WP_026353644.1 | zinc-finger domain-containing protein | - |
| LVJ81_RS06965 (LVJ81_06965) | 1419182..1420198 | + | 1017 | WP_019958978.1 | lipopolysaccharide heptosyltransferase II | - |
| LVJ81_RS06970 (LVJ81_06970) | 1420299..1421252 | + | 954 | WP_019958977.1 | thioredoxin-disulfide reductase | - |
| LVJ81_RS06975 (LVJ81_06975) | 1421360..1421833 | - | 474 | WP_019958976.1 | HD domain-containing protein | - |
| LVJ81_RS06980 (LVJ81_06980) | 1422014..1422724 | - | 711 | WP_019958975.1 | ABC transporter ATP-binding protein | - |
| LVJ81_RS06985 (LVJ81_06985) | 1422721..1423491 | - | 771 | WP_019958974.1 | ABC transporter ATP-binding protein | - |
| LVJ81_RS06990 (LVJ81_06990) | 1423492..1424586 | - | 1095 | WP_019958973.1 | branched-chain amino acid ABC transporter permease | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|