MGE detailed information
MGE type: Conjugative plasmid MGE length: 50625 bp
Accession: NZ_CP091149 Location: 1..50625 Organism: Pseudomonas avellanae strain NCPPB 4222 Replicon: plasmid p2NCPPB4222
Accession: NZ_CP091149 Location: 1..50625 Organism: Pseudomonas avellanae strain NCPPB 4222 Replicon: plasmid p2NCPPB4222
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L2Y01_RS28105 (L2Y01_28105) | 1..1314 | + | 1314 | WP_249741678.1 | replication initiation protein | - |
| L2Y01_RS28110 (L2Y01_28110) | 1498..1791 | + | 294 | WP_044425124.1 | HU family DNA-binding protein | - |
| L2Y01_RS28115 (L2Y01_28115) | 1878..2063 | + | 186 | WP_080439133.1 | stability determinant | Antitoxin Detail |
| L2Y01_RS28120 (L2Y01_28120) | 2063..2374 | + | 312 | WP_249741679.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| L2Y01_RS28125 (L2Y01_28125) | 2443..2886 | + | 444 | WP_283779189.1 | IS5 family transposase ISPa67 | Transposase |
| L2Y01_RS28130 (L2Y01_28130) | 2999..4231 | - | 1233 | WP_104742490.1 | IS91 family transposase IS801 | Transposase |
| L2Y01_RS28135 (L2Y01_28135) | 4512..5744 | - | 1233 | WP_104742490.1 | IS91 family transposase IS801 | Transposase |
| L2Y01_RS28140 (L2Y01_28140) | 5756..5956 | + | 201 | WP_249741680.1 | hypothetical protein | - |
| L2Y01_RS28145 (L2Y01_28145) | 5972..7276 | - | 1305 | WP_145915128.1 | hypothetical protein | - |
| L2Y01_RS28150 (L2Y01_28150) | 7352..7495 | + | 144 | Protein_9 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| L2Y01_RS28155 (L2Y01_28155) | 7846..8154 | - | 309 | WP_024419628.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| L2Y01_RS28160 (L2Y01_28160) | 8154..8342 | - | 189 | WP_002556028.1 | hypothetical protein | Antitoxin Detail |
| L2Y01_RS28165 (L2Y01_28165) | 8520..8834 | - | 315 | Protein_12 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| L2Y01_RS28170 (L2Y01_28170) | 9052..9318 | - | 267 | WP_044423204.1 | carbon storage regulator | - |
| L2Y01_RS28175 (L2Y01_28175) | 9529..10107 | - | 579 | WP_024420030.1 | AAA family ATPase | - |
| L2Y01_RS28180 (L2Y01_28180) | 10107..10763 | - | 657 | WP_007247578.1 | 2OG-Fe(II) oxygenase family protein | - |
| L2Y01_RS28185 (L2Y01_28185) | 10800..11595 | - | 796 | Protein_16 | aminotransferase class III-fold pyridoxal phosphate-dependent enzyme | - |
| L2Y01_RS28190 (L2Y01_28190) | 11956..12561 | + | 606 | WP_024421557.1 | Tn3 family transposase TnpR_Tn5403 | Transposase |
| L2Y01_RS28515 | 12981..13109 | + | 129 | WP_255300967.1 | hypothetical protein | - |
| L2Y01_RS28195 (L2Y01_28195) | 13272..13637 | + | 366 | WP_024420428.1 | hypothetical protein | - |
| L2Y01_RS28200 (L2Y01_28200) | 14076..14288 | + | 213 | WP_152522154.1 | hypothetical protein | - |
| L2Y01_RS28205 (L2Y01_28205) | 14464..14613 | + | 150 | WP_249741681.1 | IS21 family transposase ISPman1 | Transposase |
| L2Y01_RS28210 (L2Y01_28210) | 14645..15037 | + | 393 | Protein_22 | IS21 family transposase ISPsy20 | Transposase |
| L2Y01_RS28215 (L2Y01_28215) | 15256..15485 | + | 230 | Protein_23 | recombinase family protein | - |
| L2Y01_RS28220 (L2Y01_28220) | 15538..16194 | - | 657 | WP_005614735.1 | YopT-type cysteine protease domain-containing protein | - |
| L2Y01_RS28225 (L2Y01_28225) | 16442..17422 | - | 981 | WP_161468905.1 | IS5 family transposase ISPa41 | Transposase |
| L2Y01_RS28230 (L2Y01_28230) | 17683..17916 | - | 234 | Protein_26 | phosphoribulokinase | - |
| L2Y01_RS28235 (L2Y01_28235) | 17910..18806 | - | 897 | Protein_27 | hypothetical protein | Relaxase |
| L2Y01_RS28240 (L2Y01_28240) | 18796..19521 | - | 726 | WP_024419682.1 | relaxosome protein | - |
| L2Y01_RS28245 (L2Y01_28245) | 19886..20275 | + | 390 | WP_015060693.1 | hypothetical protein | - |
| L2Y01_RS28250 (L2Y01_28250) | 20290..20862 | - | 573 | WP_002556108.1 | hypothetical protein | - |
| L2Y01_RS28255 (L2Y01_28255) | 20859..21593 | - | 735 | WP_024419681.1 | StbB family protein | - |
| L2Y01_RS28260 (L2Y01_28260) | 21899..22492 | - | 594 | WP_005614696.1 | single-stranded DNA-binding protein | - |
| L2Y01_RS28265 (L2Y01_28265) | 22519..22803 | - | 285 | WP_024419680.1 | hypothetical protein | - |
| L2Y01_RS28270 (L2Y01_28270) | 22832..23203 | - | 372 | WP_024419679.1 | topoisomerase C-terminal repeat-containing protein | - |
| L2Y01_RS28275 (L2Y01_28275) | 23397..23801 | - | 405 | Protein_35 | Conjugal transfer protein TraG | VF |
| L2Y01_RS28280 (L2Y01_28280) | 23801..24034 | - | 234 | WP_005614702.1 | hypothetical protein | - |
| L2Y01_RS28285 (L2Y01_28285) | 24155..24427 | - | 273 | WP_024419677.1 | hypothetical protein | - |
| L2Y01_RS28290 (L2Y01_28290) | 24474..24839 | - | 366 | WP_004667995.1 | hypothetical protein | - |
| L2Y01_RS28295 (L2Y01_28295) | 24824..25210 | - | 387 | WP_024421523.1 | hypothetical protein | - |
| L2Y01_RS28300 (L2Y01_28300) | 25220..26278 | - | 1059 | WP_005614707.1 | Type IV secretion system protein VirB11 | VF |
| L2Y01_RS28305 (L2Y01_28305) | 26288..27672 | - | 1385 | Protein_41 | TrbI/VirB10 family protein | - |
| L2Y01_RS28310 (L2Y01_28310) | 27659..28618 | - | 960 | WP_231667342.1 | P-type DNA transfer protein VirB5 | - |
| L2Y01_RS28315 (L2Y01_28315) | 28615..30090 | - | 1476 | Protein_43 | conjugal transfer protein | - |
| L2Y01_RS28320 (L2Y01_28320) | 30083..30157 | - | 75 | Protein_44 | lytic transglycosylase | - |
| L2Y01_RS28325 (L2Y01_28325) | 30184..30396 | - | 213 | WP_024420422.1 | hypothetical protein | - |
| L2Y01_RS28330 (L2Y01_28330) | 30484..31017 | - | 534 | WP_024420421.1 | transcription termination/antitermination NusG family protein | - |
| L2Y01_RS28335 (L2Y01_28335) | 31262..31618 | + | 357 | WP_024420420.1 | helix-turn-helix transcriptional regulator | - |
| L2Y01_RS28340 (L2Y01_28340) | 31859..32797 | - | 939 | Protein_48 | MFS transporter | - |
| L2Y01_RS28345 (L2Y01_28345) | 32901..33311 | - | 411 | Protein_49 | MFS transporter | - |
| L2Y01_RS28350 (L2Y01_28350) | 33353..34549 | - | 1197 | WP_024420640.1 | L-2-hydroxyglutarate oxidase | - |
| L2Y01_RS28355 (L2Y01_28355) | 34625..35326 | - | 702 | WP_024420641.1 | FadR/GntR family transcriptional regulator | - |
| L2Y01_RS28360 (L2Y01_28360) | 35453..36202 | + | 750 | WP_122212308.1 | IS5 family transposase ISPa67 | Transposase |
| L2Y01_RS28365 (L2Y01_28365) | 36690..37022 | - | 333 | WP_229653851.1 | hypothetical protein | - |
| L2Y01_RS28370 (L2Y01_28370) | 37061..37711 | - | 651 | WP_003344252.1 | ParA family protein | - |
| L2Y01_RS28375 (L2Y01_28375) | 38204..38839 | + | 636 | WP_024421154.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| L2Y01_RS28380 (L2Y01_28380) | 38989..39969 | + | 981 | WP_249741677.1 | IS5 family transposase ISPa41 | Transposase |
| L2Y01_RS28385 (L2Y01_28385) | 40106..40378 | + | 273 | WP_024421153.1 | hypothetical protein | - |
| L2Y01_RS28390 (L2Y01_28390) | 40381..40815 | + | 435 | WP_024420044.1 | hypothetical protein | Relaxase |
| L2Y01_RS28395 (L2Y01_28395) | 40925..43591 | + | 2667 | WP_024420043.1 | histidinol-phosphatase | - |
| L2Y01_RS28400 (L2Y01_28400) | 43573..44730 | + | 1158 | WP_005614725.1 | putative DNA binding domain-containing protein | - |
| L2Y01_RS28405 (L2Y01_28405) | 45154..47271 | + | 2118 | WP_081681477.1 | type III secretion system effector HopD1 | - |
| L2Y01_RS28410 (L2Y01_28410) | 47695..48762 | - | 1068 | WP_024419981.1 | IS630 family transposase ISPsy32 | Transposase |
| L2Y01_RS28415 (L2Y01_28415) | 48865..49425 | + | 561 | WP_005782565.1 | Tn3 family transposase TnpR_ISArsp6 | Transposase |
| L2Y01_RS28420 (L2Y01_28420) | 49409..49573 | + | 165 | Protein_64 | IS481 family transposase ISAzs36 | Transposase |
| L2Y01_RS28425 (L2Y01_28425) | 49827..50216 | + | 390 | WP_024420995.1 | GntR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|