MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 110191 bp
Accession: NZ_CP091148 Location: 1..110191 Organism: Pseudomonas avellanae strain NCPPB 4222 Replicon: plasmid p1NCPPB4222
Accession: NZ_CP091148 Location: 1..110191 Organism: Pseudomonas avellanae strain NCPPB 4222 Replicon: plasmid p1NCPPB4222
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L2Y01_RS27505 (L2Y01_27505) | 1..1314 | + | 1314 | WP_249740316.1 | replication initiation protein | - |
| L2Y01_RS27510 (L2Y01_27510) | 1463..1821 | + | 359 | Protein_1 | IS3 family transposase ISPsy24 | Transposase |
| L2Y01_RS27515 (L2Y01_27515) | 2003..3235 | - | 1233 | WP_104742490.1 | IS91 family transposase IS801 | Transposase |
| L2Y01_RS27520 (L2Y01_27520) | 3516..4748 | - | 1233 | WP_104742490.1 | IS91 family transposase IS801 | Transposase |
| L2Y01_RS27525 (L2Y01_27525) | 5029..6261 | - | 1233 | WP_104742490.1 | IS91 family transposase IS801 | Transposase |
| L2Y01_RS27530 (L2Y01_27530) | 6357..6533 | - | 177 | Protein_5 | IS21 family transposase ISPsy20 | Transposase |
| L2Y01_RS27535 (L2Y01_27535) | 6526..8025 | - | 1500 | WP_104698782.1 | IS21 family transposase ISPsy20 | Transposase |
| L2Y01_RS27540 (L2Y01_27540) | 8435..10150 | + | 1716 | WP_249741674.1 | N-6 DNA methylase | - |
| L2Y01_RS27545 (L2Y01_27545) | 10150..11229 | + | 1080 | WP_005620862.1 | BsuBI/PstI family type II restriction endonuclease | - |
| L2Y01_RS27550 (L2Y01_27550) | 11241..11414 | + | 174 | WP_156355516.1 | hypothetical protein | - |
| L2Y01_RS27555 (L2Y01_27555) | 11419..14002 | - | 2584 | Protein_10 | Tn3 family transposase TnpA_Tn5403 | Transposase |
| L2Y01_RS27560 (L2Y01_27560) | 14158..15390 | - | 1233 | WP_104742490.1 | IS91 family transposase IS801 | Transposase |
| L2Y01_RS27565 (L2Y01_27565) | 15486..15884 | + | 399 | Protein_12 | DUF4113 domain-containing protein | - |
| L2Y01_RS27570 (L2Y01_27570) | 16148..16897 | + | 750 | WP_122212308.1 | IS5 family transposase ISPa67 | Transposase |
| L2Y01_RS27575 (L2Y01_27575) | 16947..17393 | + | 447 | Protein_14 | SOS response-associated peptidase family protein | - |
| L2Y01_RS27580 (L2Y01_27580) | 17485..18647 | + | 1163 | WP_099265290.1 | IS3 family transposase ISPsy24 | Transposase |
| L2Y01_RS27585 (L2Y01_27585) | 18967..22053 | + | 3087 | WP_156355517.1 | DEAD/DEAH box helicase family protein | - |
| L2Y01_RS27590 (L2Y01_27590) | 22055..24934 | + | 2880 | WP_046398154.1 | site-specific DNA-methyltransferase | - |
| L2Y01_RS27595 (L2Y01_27595) | 24934..27027 | + | 2094 | WP_046398155.1 | 3'-5' exonuclease | - |
| L2Y01_RS27600 (L2Y01_27600) | 27134..28056 | - | 923 | Protein_19 | tyrosine-type recombinase/integrase | - |
| L2Y01_RS27605 (L2Y01_27605) | 28323..28508 | + | 186 | WP_046398156.1 | hypothetical protein | - |
| L2Y01_RS27610 (L2Y01_27610) | 28583..29458 | - | 876 | Protein_21 | Sensor kinase CckA | VF |
| L2Y01_RS27615 (L2Y01_27615) | 29556..30788 | + | 1233 | WP_104742490.1 | IS91 family transposase IS801 | Transposase |
| L2Y01_RS27620 (L2Y01_27620) | 30970..31338 | - | 369 | Protein_23 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| L2Y01_RS27625 (L2Y01_27625) | 31617..32240 | + | 624 | WP_046398133.1 | hypothetical protein | - |
| L2Y01_RS27630 (L2Y01_27630) | 32276..32914 | - | 639 | WP_046398132.1 | RES family NAD+ phosphorylase | - |
| L2Y01_RS27635 (L2Y01_27635) | 33361..33990 | + | 630 | WP_046398131.1 | ParA family partition ATPase | - |
| L2Y01_RS27640 (L2Y01_27640) | 33987..34223 | + | 237 | WP_046398130.1 | hypothetical protein | - |
| L2Y01_RS27645 (L2Y01_27645) | 34460..34927 | + | 468 | WP_046398129.1 | hypothetical protein | - |
| L2Y01_RS27650 (L2Y01_27650) | 35538..36770 | + | 1233 | WP_104742490.1 | IS91 family transposase IS801 | Transposase |
| L2Y01_RS27655 (L2Y01_27655) | 37374..37541 | + | 168 | WP_156355515.1 | hypothetical protein | - |
| L2Y01_RS27660 (L2Y01_27660) | 37597..38433 | + | 837 | WP_046398126.1 | DUF932 domain-containing protein | - |
| L2Y01_RS27665 (L2Y01_27665) | 38464..38679 | + | 216 | WP_046398125.1 | hypothetical protein | - |
| L2Y01_RS27670 (L2Y01_27670) | 38737..39012 | - | 276 | WP_052746208.1 | hypothetical protein | - |
| L2Y01_RS27675 (L2Y01_27675) | 39188..40420 | - | 1233 | WP_104742490.1 | IS91 family transposase IS801 | Transposase |
| L2Y01_RS27680 (L2Y01_27680) | 40519..40845 | - | 327 | Protein_35 | Tn3 family transposase TnpA_Tn5403 | Transposase |
| L2Y01_RS27685 (L2Y01_27685) | 40939..41544 | + | 606 | WP_024421557.1 | Tn3 family transposase TnpR_Tn5403 | Transposase |
| L2Y01_RS27690 (L2Y01_27690) | 41568..42084 | - | 517 | Protein_37 | DNA polymerase V subunit UmuC | - |
| L2Y01_RS27695 (L2Y01_27695) | 42128..43576 | - | 1449 | WP_024420006.1 | FAD-dependent oxidoreductase | - |
| L2Y01_RS27700 (L2Y01_27700) | 43615..44619 | - | 1005 | WP_229687597.1 | 2-oxoglutarate and iron-dependent oxygenase domain-containing protein | - |
| L2Y01_RS27705 (L2Y01_27705) | 45097..46329 | - | 1233 | WP_104742490.1 | IS91 family transposase IS801 | Transposase |
| L2Y01_RS27710 (L2Y01_27710) | 46549..46659 | + | 111 | WP_249741676.1 | hypothetical protein | - |
| L2Y01_RS27715 (L2Y01_27715) | 46714..47211 | - | 498 | WP_046398095.1 | GNAT family N-acetyltransferase | - |
| L2Y01_RS27720 (L2Y01_27720) | 47208..47489 | - | 282 | WP_046398096.1 | DUF1778 domain-containing protein | - |
| L2Y01_RS27725 (L2Y01_27725) | 47505..47898 | + | 394 | Protein_44 | hypothetical protein | - |
| L2Y01_RS27730 (L2Y01_27730) | 48064..49305 | + | 1242 | WP_249741675.1 | PAS domain S-box protein | - |
| L2Y01_RS27735 (L2Y01_27735) | 49435..50667 | - | 1233 | WP_104742490.1 | IS91 family transposase IS801 | Transposase |
| L2Y01_RS27740 (L2Y01_27740) | 50775..50924 | - | 150 | Protein_47 | IS21 family transposase ISPst3 | Transposase |
| L2Y01_RS27745 (L2Y01_27745) | 51059..51568 | - | 510 | WP_005735414.1 | peptide deformylase | - |
| L2Y01_RS27750 (L2Y01_27750) | 51856..52677 | - | 822 | Protein_49 | IS91 family transposase IS801 | Transposase |
| L2Y01_RS27755 (L2Y01_27755) | 53488..53706 | - | 219 | Protein_50 | carbon storage regulator | - |
| L2Y01_RS27760 (L2Y01_27760) | 53716..53967 | - | 252 | WP_024421558.1 | hypothetical protein | - |
| L2Y01_RS27765 (L2Y01_27765) | 54918..55982 | + | 1065 | WP_024420725.1 | type III secretion system chaperone | - |
| L2Y01_RS27770 (L2Y01_27770) | 55979..57925 | + | 1947 | WP_005620220.1 | hypothetical protein | - |
| L2Y01_RS27775 (L2Y01_27775) | 58065..58346 | - | 282 | WP_024421360.1 | hypothetical protein | - |
| L2Y01_RS27780 (L2Y01_27780) | 59463..59684 | - | 222 | WP_004666918.1 | hypothetical protein | - |
| L2Y01_RS27785 (L2Y01_27785) | 59722..60135 | - | 414 | WP_249741670.1 | TraR/DksA family transcriptional regulator | - |
| L2Y01_RS27790 (L2Y01_27790) | 60171..60395 | - | 225 | WP_044424864.1 | carbon storage regulator | - |
| L2Y01_RS27795 (L2Y01_27795) | 60451..60666 | - | 216 | WP_024420033.1 | hypothetical protein | - |
| L2Y01_RS27800 (L2Y01_27800) | 60709..61002 | - | 294 | WP_147477515.1 | hypothetical protein | - |
| L2Y01_RS27805 (L2Y01_27805) | 61114..61479 | - | 366 | WP_152522141.1 | PapB/FocB family fimbrial expression transcriptional regulator | - |
| L2Y01_RS27810 (L2Y01_27810) | 62054..62338 | - | 285 | Protein_61 | site-specific integrase | - |
| L2Y01_RS27815 (L2Y01_27815) | 62459..62782 | - | 324 | WP_007253135.1 | hypothetical protein | - |
| L2Y01_RS27820 (L2Y01_27820) | 62775..63473 | - | 699 | WP_005734862.1 | Protein virC1 | VF |
| L2Y01_RS27825 (L2Y01_27825) | 63817..64449 | + | 633 | WP_024421175.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| L2Y01_RS27830 (L2Y01_27830) | 64722..64946 | + | 225 | WP_003319697.1 | antitoxin MazE family protein | Antitoxin Detail |
| L2Y01_RS27835 (L2Y01_27835) | 64943..65269 | + | 327 | WP_003319696.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| L2Y01_RS27840 (L2Y01_27840) | 65341..66444 | + | 1104 | WP_004663854.1 | IS5 family transposase ISPsy19 | Transposase |
| L2Y01_RS27845 (L2Y01_27845) | 66681..67482 | + | 802 | Protein_68 | IS3 family transposase IS51 | Transposase |
| L2Y01_RS27850 (L2Y01_27850) | 67596..68183 | - | 588 | WP_081591645.1 | AvrPphF family type III effector | - |
| L2Y01_RS27855 (L2Y01_27855) | 68194..68589 | - | 396 | WP_024420708.1 | CesT family type III secretion system chaperone | - |
| L2Y01_RS27860 (L2Y01_27860) | 69398..69652 | - | 255 | WP_249741671.1 | hypothetical protein | - |
| L2Y01_RS27865 (L2Y01_27865) | 69673..69849 | + | 177 | Protein_72 | IS91 family transposase IS801 | Transposase |
| L2Y01_RS27870 (L2Y01_27870) | 70445..71755 | + | 1311 | WP_192816114.1 | AAA family ATPase | - |
| L2Y01_RS27875 (L2Y01_27875) | 72114..74144 | - | 2031 | WP_024651585.1 | Methyl-accepting chemotaxis protein McpQ | VF |
| L2Y01_RS27880 (L2Y01_27880) | 74569..75318 | + | 750 | WP_122212308.1 | IS5 family transposase ISPa67 | Transposase |
| L2Y01_RS27885 (L2Y01_27885) | 75547..75669 | + | 123 | Protein_76 | carbon storage regulator | - |
| L2Y01_RS27890 (L2Y01_27890) | 75705..76123 | + | 419 | Protein_77 | TraR/DksA family transcriptional regulator | - |
| L2Y01_RS27895 (L2Y01_27895) | 76161..76382 | + | 222 | WP_005620871.1 | hypothetical protein | - |
| L2Y01_RS27900 (L2Y01_27900) | 76708..77328 | - | 621 | WP_005747119.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| L2Y01_RS27905 (L2Y01_27905) | 77537..77875 | + | 339 | WP_024420290.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| L2Y01_RS27910 (L2Y01_27910) | 77875..78162 | + | 288 | WP_005622028.1 | XRE family transcriptional regulator | - |
| L2Y01_RS27915 (L2Y01_27915) | 78224..78640 | + | 417 | WP_024420291.1 | TrfB-related DNA-binding protein | - |
| L2Y01_RS27920 (L2Y01_27920) | 79099..79476 | + | 378 | WP_007247501.1 | hypothetical protein | - |
| L2Y01_RS27925 (L2Y01_27925) | 79523..80359 | + | 837 | WP_024420292.1 | DUF932 domain-containing protein | - |
| L2Y01_RS27930 (L2Y01_27930) | 80427..80627 | + | 201 | WP_004666908.1 | hypothetical protein | - |
| L2Y01_RS27935 (L2Y01_27935) | 80676..81137 | + | 462 | WP_249741672.1 | hypothetical protein | - |
| L2Y01_RS27940 (L2Y01_27940) | 81399..81815 | - | 417 | WP_002556038.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| L2Y01_RS27945 (L2Y01_27945) | 81812..82066 | - | 255 | WP_002556039.1 | plasmid stabilization protein | Antitoxin Detail |
| L2Y01_RS27950 (L2Y01_27950) | 82638..83261 | - | 624 | WP_024420277.1 | glycoside hydrolase family 25 protein | - |
| L2Y01_RS27955 (L2Y01_27955) | 83795..84976 | - | 1182 | WP_011169845.1 | glycoside hydrolase family 10 protein | - |
| L2Y01_RS27960 (L2Y01_27960) | 85061..86356 | - | 1296 | WP_024420278.1 | glycoside hydrolase family 68 protein | - |
| L2Y01_RS27965 (L2Y01_27965) | 86368..86553 | - | 186 | WP_024420279.1 | Com family DNA-binding transcriptional regulator | - |
| L2Y01_RS27970 (L2Y01_27970) | 86482..86847 | + | 366 | WP_249740317.1 | hypothetical protein | - |
| L2Y01_RS27975 (L2Y01_27975) | 87047..87688 | - | 642 | Protein_94 | putative signaling protein | VF |
| L2Y01_RS27980 (L2Y01_27980) | 88015..89247 | - | 1233 | WP_104742490.1 | IS91 family transposase IS801 | Transposase |
| L2Y01_RS27985 (L2Y01_27985) | 89528..90760 | - | 1233 | WP_104742490.1 | IS91 family transposase IS801 | Transposase |
| L2Y01_RS27990 (L2Y01_27990) | 91041..92273 | - | 1233 | WP_104742490.1 | IS91 family transposase IS801 | Transposase |
| L2Y01_RS27995 (L2Y01_27995) | 92349..92528 | + | 180 | WP_249741673.1 | hypothetical protein | - |
| L2Y01_RS28000 (L2Y01_28000) | 92513..92665 | + | 153 | Protein_99 | DotI/IcmL/TraM family protein | - |
| L2Y01_RS28005 (L2Y01_28005) | 92722..93780 | + | 1059 | WP_082452170.1 | hypothetical protein | VF |
| L2Y01_RS28010 (L2Y01_28010) | 93786..95144 | + | 1359 | WP_024420289.1 | conjugal transfer protein TraO | - |
| L2Y01_RS28015 (L2Y01_28015) | 95141..95851 | + | 711 | WP_024421511.1 | conjugal transfer protein TraP | - |
| L2Y01_RS28020 (L2Y01_28020) | 95860..96402 | + | 543 | WP_046398041.1 | conjugal transfer protein TraQ | - |
| L2Y01_RS28025 (L2Y01_28025) | 96478..96873 | + | 396 | WP_007247244.1 | hypothetical protein | - |
| L2Y01_RS28030 (L2Y01_28030) | 96917..97192 | - | 276 | WP_005622170.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| L2Y01_RS28035 (L2Y01_28035) | 97170..97370 | - | 201 | WP_005622172.1 | hypothetical protein | - |
| L2Y01_RS28040 (L2Y01_28040) | 97555..98166 | + | 612 | WP_005622174.1 | hypothetical protein | - |
| L2Y01_RS28045 (L2Y01_28045) | 98141..101197 | + | 3057 | WP_046398040.1 | conjugal transfer protein | - |
| L2Y01_RS28050 (L2Y01_28050) | 101221..101457 | + | 237 | WP_024420285.1 | hypothetical protein | - |
| L2Y01_RS28055 (L2Y01_28055) | 101500..102714 | + | 1215 | WP_004666881.1 | conjugal transfer protein TraW | - |
| L2Y01_RS28060 (L2Y01_28060) | 102704..103306 | + | 603 | WP_024420284.1 | conjugal transfer protein TraX | - |
| L2Y01_RS28065 (L2Y01_28065) | 103337..104269 | + | 933 | WP_231667340.1 | DotA/TraY family protein | - |
| L2Y01_RS28070 (L2Y01_28070) | 104185..104385 | - | 201 | WP_005622049.1 | type II toxin-antitoxin system VapB family antitoxin | - |
| L2Y01_RS28075 (L2Y01_28075) | 104477..105562 | + | 1086 | WP_024420283.1 | thioredoxin fold domain-containing protein | - |
| L2Y01_RS28080 (L2Y01_28080) | 105549..107837 | + | 2289 | WP_046398039.1 | F-type conjugative transfer protein TrbC | - |
| L2Y01_RS28085 (L2Y01_28085) | 107865..108287 | + | 423 | WP_024421149.1 | hypothetical protein | - |
| L2Y01_RS28090 (L2Y01_28090) | 108308..108871 | + | 564 | WP_005622240.1 | hypothetical protein | - |
| L2Y01_RS28095 (L2Y01_28095) | 109059..109487 | + | 429 | WP_024421148.1 | GntR family transcriptional regulator | - |
| L2Y01_RS28100 (L2Y01_28100) | 109566..109793 | + | 228 | WP_024421147.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|