MGE detailed information
MGE type: Conjugative plasmid MGE length: 105919 bp
Accession: NZ_CP091144 Location: 1..105919 Organism: Pseudomonas avellanae strain NCPPB 3491 Replicon: plasmid p1NCPPB3491
Accession: NZ_CP091144 Location: 1..105919 Organism: Pseudomonas avellanae strain NCPPB 3491 Replicon: plasmid p1NCPPB3491
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L2Y00_RS28300 (L2Y00_28300) | 1..1314 | + | 1314 | WP_249740307.1 | replication initiation protein | - |
| L2Y00_RS28305 (L2Y00_28305) | 1474..1890 | + | 417 | WP_005619498.1 | hypothetical protein | - |
| L2Y00_RS28310 (L2Y00_28310) | 1926..2156 | + | 231 | WP_024421120.1 | hypothetical protein | - |
| L2Y00_RS28315 (L2Y00_28315) | 2153..2785 | + | 633 | WP_032616622.1 | hypothetical protein | - |
| L2Y00_RS28320 (L2Y00_28320) | 2861..3466 | - | 606 | WP_024421119.1 | hypothetical protein | - |
| L2Y00_RS28325 (L2Y00_28325) | 3466..3639 | - | 174 | WP_005759896.1 | hypothetical protein | - |
| L2Y00_RS28330 (L2Y00_28330) | 3822..4013 | - | 192 | WP_010208571.1 | hypothetical protein | - |
| L2Y00_RS28335 (L2Y00_28335) | 4013..4597 | - | 585 | Protein_7 | recombinase family protein | - |
| L2Y00_RS28340 (L2Y00_28340) | 4631..4807 | - | 177 | Protein_8 | Tn3 family transposase | - |
| L2Y00_RS28345 (L2Y00_28345) | 4989..6218 | - | 1230 | WP_249740313.1 | IS91 family transposase | - |
| L2Y00_RS28350 (L2Y00_28350) | 6425..6898 | + | 474 | WP_074800939.1 | DUF3757 domain-containing protein | - |
| L2Y00_RS28355 (L2Y00_28355) | 7180..7818 | - | 639 | Protein_11 | transposase zinc-binding domain-containing protein | - |
| L2Y00_RS28360 (L2Y00_28360) | 7830..8807 | + | 978 | WP_249740308.1 | thioredoxin fold domain-containing protein | - |
| L2Y00_RS28365 (L2Y00_28365) | 9018..9239 | + | 222 | Protein_13 | IS110 family transposase | - |
| L2Y00_RS28370 (L2Y00_28370) | 9591..9985 | + | 395 | Protein_14 | family 10 glycosylhydrolase | - |
| L2Y00_RS28375 (L2Y00_28375) | 9986..10774 | + | 789 | WP_024421548.1 | N-acetylmuramoyl-L-alanine amidase | - |
| L2Y00_RS28380 (L2Y00_28380) | 10771..11136 | + | 366 | WP_024421547.1 | hypothetical protein | - |
| L2Y00_RS28385 (L2Y00_28385) | 11376..12452 | + | 1077 | WP_005621995.1 | LD-carboxypeptidase | - |
| L2Y00_RS28390 (L2Y00_28390) | 12693..13011 | - | 319 | Protein_18 | transposase | - |
| L2Y00_RS28395 (L2Y00_28395) | 13302..14051 | + | 750 | WP_122212308.1 | IS5 family transposase | - |
| L2Y00_RS28400 (L2Y00_28400) | 14135..15112 | + | 978 | WP_024421311.1 | IS5-like element ISPssy family transposase | - |
| L2Y00_RS28405 (L2Y00_28405) | 15240..16253 | - | 1014 | WP_005622422.1 | MFS transporter | - |
| L2Y00_RS28410 (L2Y00_28410) | 16543..17424 | + | 882 | WP_005622420.1 | LysR family transcriptional regulator | - |
| L2Y00_RS28415 (L2Y00_28415) | 17631..18608 | - | 978 | WP_024421311.1 | IS5-like element ISPssy family transposase | - |
| L2Y00_RS28420 (L2Y00_28420) | 18692..19441 | - | 750 | WP_122212308.1 | IS5 family transposase | - |
| L2Y00_RS28425 (L2Y00_28425) | 19551..20300 | - | 750 | WP_122212308.1 | IS5 family transposase | - |
| L2Y00_RS28430 (L2Y00_28430) | 20410..20874 | - | 465 | WP_029774665.1 | hypothetical protein | - |
| L2Y00_RS28435 (L2Y00_28435) | 21053..22012 | - | 960 | WP_024421284.1 | tyrosine-type recombinase/integrase | - |
| L2Y00_RS28440 (L2Y00_28440) | 22009..22398 | - | 390 | WP_024421283.1 | hypothetical protein | - |
| L2Y00_RS28445 (L2Y00_28445) | 22604..24334 | + | 1731 | WP_005615143.1 | class I SAM-dependent DNA methyltransferase | - |
| L2Y00_RS28450 (L2Y00_28450) | 24324..25658 | + | 1335 | WP_005615145.1 | restriction endonuclease subunit S | - |
| L2Y00_RS28455 (L2Y00_28455) | 25655..26707 | + | 1053 | WP_005615146.1 | PDDEXK nuclease domain-containing protein | - |
| L2Y00_RS28460 (L2Y00_28460) | 26704..29826 | + | 3123 | WP_005769819.1 | type I restriction endonuclease subunit R | - |
| L2Y00_RS28465 (L2Y00_28465) | 30219..30707 | - | 489 | WP_024421281.1 | hypothetical protein | - |
| L2Y00_RS28470 (L2Y00_28470) | 31019..31699 | + | 681 | WP_005730279.1 | AAA family ATPase | - |
| L2Y00_RS28475 (L2Y00_28475) | 31705..32052 | + | 348 | WP_249740309.1 | hypothetical protein | - |
| L2Y00_RS28480 (L2Y00_28480) | 32593..32846 | + | 254 | Protein_36 | integrase core domain-containing protein | - |
| L2Y00_RS28485 (L2Y00_28485) | 32931..33287 | + | 357 | WP_229687578.1 | hypothetical protein | - |
| L2Y00_RS28490 (L2Y00_28490) | 33380..34879 | + | 1500 | WP_249740291.1 | IS21-like element ISPsy20 family transposase | - |
| L2Y00_RS28495 (L2Y00_28495) | 34872..35675 | + | 804 | WP_249740310.1 | IS21-like element ISPsy20 family helper ATPase IstB | - |
| L2Y00_RS28500 (L2Y00_28500) | 35814..36329 | - | 516 | WP_229687623.1 | DUF5939 domain-containing protein | - |
| L2Y00_RS28505 (L2Y00_28505) | 36768..36992 | - | 225 | Protein_41 | phosphoribulokinase | - |
| L2Y00_RS28510 (L2Y00_28510) | 37227..38330 | - | 1104 | Protein_42 | IS5-like element ISPsy19 family transposase | - |
| L2Y00_RS28515 (L2Y00_28515) | 38407..39156 | - | 750 | WP_122212308.1 | IS5 family transposase | - |
| L2Y00_RS28520 (L2Y00_28520) | 39372..40433 | - | 1062 | Protein_44 | Tn3 family transposase | - |
| L2Y00_RS28525 (L2Y00_28525) | 40440..40766 | + | 327 | WP_005622105.1 | hypothetical protein | - |
| L2Y00_RS28530 (L2Y00_28530) | 41023..41688 | + | 666 | WP_005622107.1 | XopO/AvrRps4 family type III secretion system effector | - |
| L2Y00_RS28535 (L2Y00_28535) | 42408..42578 | - | 171 | Protein_47 | hypothetical protein | - |
| L2Y00_RS28540 (L2Y00_28540) | 42559..42840 | - | 282 | WP_015062535.1 | hypothetical protein | - |
| L2Y00_RS28545 (L2Y00_28545) | 42957..44261 | - | 1305 | WP_145915128.1 | hypothetical protein | - |
| L2Y00_RS28550 (L2Y00_28550) | 44337..44480 | + | 144 | Protein_50 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| L2Y00_RS28555 (L2Y00_28555) | 44831..45139 | - | 309 | WP_024419628.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| L2Y00_RS28560 (L2Y00_28560) | 45139..45327 | - | 189 | WP_002556028.1 | hypothetical protein | Antitoxin Detail |
| L2Y00_RS28565 (L2Y00_28565) | 45505..45696 | - | 192 | Protein_53 | helix-turn-helix domain-containing protein | - |
| L2Y00_RS28570 (L2Y00_28570) | 45877..46656 | - | 780 | WP_249740311.1 | transposase | - |
| L2Y00_RS28575 (L2Y00_28575) | 46722..49610 | - | 2889 | WP_249740312.1 | Tn3 family transposase | - |
| L2Y00_RS28580 (L2Y00_28580) | 49704..50309 | + | 606 | WP_024421557.1 | recombinase family protein | - |
| L2Y00_RS28585 (L2Y00_28585) | 50333..50866 | - | 534 | Protein_57 | DNA polymerase V subunit UmuC | - |
| L2Y00_RS28590 (L2Y00_28590) | 50910..52358 | - | 1449 | WP_005622074.1 | FAD-dependent oxidoreductase | - |
| L2Y00_RS28595 (L2Y00_28595) | 52397..53401 | - | 1005 | WP_229687597.1 | 2-oxoglutarate and iron-dependent oxygenase domain-containing protein | - |
| L2Y00_RS28600 (L2Y00_28600) | 53568..53847 | - | 280 | Protein_60 | helix-turn-helix domain-containing protein | - |
| L2Y00_RS28605 (L2Y00_28605) | 53991..54500 | - | 510 | WP_005735414.1 | peptide deformylase | - |
| L2Y00_RS28610 (L2Y00_28610) | 54788..56017 | - | 1230 | WP_249740306.1 | IS91 family transposase | - |
| L2Y00_RS28615 (L2Y00_28615) | 56815..57033 | - | 219 | Protein_63 | carbon storage regulator | - |
| L2Y00_RS28620 (L2Y00_28620) | 57043..57294 | - | 252 | WP_024421558.1 | hypothetical protein | - |
| L2Y00_RS28625 (L2Y00_28625) | 57404..57616 | + | 213 | WP_249740314.1 | hypothetical protein | - |
| L2Y00_RS28630 (L2Y00_28630) | 57613..58368 | - | 756 | WP_151318986.1 | IS21-like element ISPsy14 family helper ATPase IstB | - |
| L2Y00_RS28635 (L2Y00_28635) | 58389..59903 | - | 1515 | WP_249740200.1 | IS21-like element ISPsy40 family transposase | - |
| L2Y00_RS28640 (L2Y00_28640) | 60107..61009 | + | 903 | Protein_68 | IS5-like element ISPssy family transposase | - |
| L2Y00_RS28645 (L2Y00_28645) | 61171..61920 | - | 750 | WP_122212308.1 | IS5 family transposase | - |
| L2Y00_RS28650 (L2Y00_28650) | 62922..63986 | + | 1065 | WP_024420725.1 | type III secretion system chaperone | - |
| L2Y00_RS28655 (L2Y00_28655) | 63983..65929 | + | 1947 | WP_005620220.1 | hypothetical protein | - |
| L2Y00_RS28660 (L2Y00_28660) | 66069..66350 | - | 282 | WP_024421360.1 | hypothetical protein | - |
| L2Y00_RS28665 (L2Y00_28665) | 67149..67325 | - | 177 | Protein_73 | hypothetical protein | - |
| L2Y00_RS28670 (L2Y00_28670) | 67337..67600 | + | 264 | WP_235654512.1 | hypothetical protein | - |
| L2Y00_RS28675 (L2Y00_28675) | 68409..68804 | + | 396 | WP_024420708.1 | CesT family type III secretion system chaperone | - |
| L2Y00_RS28680 (L2Y00_28680) | 68815..69402 | + | 588 | WP_081591645.1 | AvrPphF family type III effector | - |
| L2Y00_RS28685 (L2Y00_28685) | 69516..70317 | - | 802 | Protein_77 | IS3-like element IS51 family transposase | - |
| L2Y00_RS28690 (L2Y00_28690) | 70554..71657 | - | 1104 | Protein_78 | IS5-like element ISPsy19 family transposase | - |
| L2Y00_RS28695 (L2Y00_28695) | 71729..72055 | - | 327 | WP_003319696.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| L2Y00_RS28700 (L2Y00_28700) | 72052..72276 | - | 225 | WP_003319697.1 | antitoxin MazE family protein | Antitoxin Detail |
| L2Y00_RS28705 (L2Y00_28705) | 72549..73181 | - | 633 | WP_024421175.1 | recombinase family protein | - |
| L2Y00_RS28710 (L2Y00_28710) | 74082..74363 | + | 282 | WP_019742102.1 | DUF1778 domain-containing protein | - |
| L2Y00_RS28715 (L2Y00_28715) | 74360..74869 | + | 510 | WP_019742103.1 | GNAT family N-acetyltransferase | - |
| L2Y00_RS28720 (L2Y00_28720) | 74923..75153 | - | 231 | WP_019742104.1 | hypothetical protein | - |
| L2Y00_RS28725 (L2Y00_28725) | 75150..75779 | - | 630 | WP_024421519.1 | ParA family partition ATPase | - |
| L2Y00_RS28730 (L2Y00_28730) | 75927..76163 | - | 237 | WP_019740456.1 | helix-turn-helix transcriptional regulator | - |
| L2Y00_RS28735 (L2Y00_28735) | 76281..76928 | + | 648 | WP_019740455.1 | XRE family transcriptional regulator | - |
| L2Y00_RS28740 (L2Y00_28740) | 77319..78017 | + | 699 | WP_005614718.1 | lytic transglycosylase domain-containing protein | - |
| L2Y00_RS28745 (L2Y00_28745) | 78017..78352 | + | 336 | WP_005614716.1 | hypothetical protein | - |
| L2Y00_RS28750 (L2Y00_28750) | 78365..78853 | + | 489 | WP_005614714.1 | VirB3 family type IV secretion system protein | - |
| L2Y00_RS28755 (L2Y00_28755) | 78756..81254 | + | 2499 | WP_169338191.1 | conjugal transfer protein | - |
| L2Y00_RS28760 (L2Y00_28760) | 81251..81937 | + | 687 | WP_005614712.1 | P-type DNA transfer protein VirB5 | - |
| L2Y00_RS28765 (L2Y00_28765) | 81970..82323 | + | 354 | WP_024421521.1 | hypothetical protein | - |
| L2Y00_RS28770 (L2Y00_28770) | 82334..83266 | + | 933 | WP_005614711.1 | type IV secretion system protein | - |
| L2Y00_RS28775 (L2Y00_28775) | 83334..83600 | + | 267 | WP_081591380.1 | conjugal transfer protein | - |
| L2Y00_RS28780 (L2Y00_28780) | 83638..84426 | + | 789 | WP_005614710.1 | type IV secretion system protein | - |
| L2Y00_RS28785 (L2Y00_28785) | 84416..85225 | + | 810 | WP_005614709.1 | P-type conjugative transfer protein VirB9 | - |
| L2Y00_RS28790 (L2Y00_28790) | 85212..86603 | + | 1392 | WP_024421522.1 | TrbI/VirB10 family protein | - |
| L2Y00_RS28795 (L2Y00_28795) | 86613..87671 | + | 1059 | WP_005614707.1 | P-type DNA transfer ATPase VirB11 | - |
| L2Y00_RS28800 (L2Y00_28800) | 87681..88067 | + | 387 | WP_024421523.1 | hypothetical protein | - |
| L2Y00_RS28805 (L2Y00_28805) | 88052..88417 | + | 366 | WP_004667995.1 | hypothetical protein | - |
| L2Y00_RS28810 (L2Y00_28810) | 88464..88736 | + | 273 | WP_024421524.1 | hypothetical protein | - |
| L2Y00_RS28815 (L2Y00_28815) | 88857..89090 | + | 234 | WP_005614702.1 | hypothetical protein | - |
| L2Y00_RS28820 (L2Y00_28820) | 89090..90763 | + | 1674 | WP_005614701.1 | type IV secretory system conjugative DNA transfer family protein | - |
| L2Y00_RS28825 (L2Y00_28825) | 90804..91166 | + | 363 | WP_024421525.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| L2Y00_RS28830 (L2Y00_28830) | 91194..93359 | + | 2166 | WP_005614699.1 | type IA DNA topoisomerase | - |
| L2Y00_RS28835 (L2Y00_28835) | 93388..93672 | + | 285 | WP_005614698.1 | hypothetical protein | - |
| L2Y00_RS28840 (L2Y00_28840) | 93699..94292 | + | 594 | WP_005614696.1 | single-stranded DNA-binding protein | - |
| L2Y00_RS28845 (L2Y00_28845) | 94670..96202 | - | 1533 | WP_249740203.1 | IS66 family transposase | - |
| L2Y00_RS28850 (L2Y00_28850) | 96220..96579 | - | 360 | WP_005621010.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| L2Y00_RS28855 (L2Y00_28855) | 96664..97365 | + | 702 | WP_029774735.1 | StbB family protein | - |
| L2Y00_RS28860 (L2Y00_28860) | 97365..97937 | + | 573 | WP_005619502.1 | hypothetical protein | - |
| L2Y00_RS28865 (L2Y00_28865) | 97982..98356 | - | 375 | WP_050575249.1 | hypothetical protein | - |
| L2Y00_RS28870 (L2Y00_28870) | 98652..99587 | + | 936 | WP_229687584.1 | relaxosome protein | - |
| L2Y00_RS28875 (L2Y00_28875) | 99577..100278 | + | 702 | Protein_115 | relaxase/mobilization nuclease domain-containing protein | - |
| L2Y00_RS28880 (L2Y00_28880) | 100574..100993 | + | 420 | WP_024421267.1 | hypothetical protein | - |
| L2Y00_RS28885 (L2Y00_28885) | 101308..103665 | + | 2358 | WP_024421268.1 | hypothetical protein | - |
| L2Y00_RS28890 (L2Y00_28890) | 103793..104221 | + | 429 | WP_024421269.1 | GntR family transcriptional regulator | - |
| L2Y00_RS28895 (L2Y00_28895) | 104379..105029 | + | 651 | WP_005730296.1 | AAA family ATPase | - |
| L2Y00_RS28900 (L2Y00_28900) | 105020..105373 | + | 354 | WP_024421270.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|