MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 61132 bp
Accession: NZ_CP090882 Location: 1018481..1079612 Organism: Streptococcus pneumoniae strain CH2241 Replicon: chromosome
Accession: NZ_CP090882 Location: 1018481..1079612 Organism: Streptococcus pneumoniae strain CH2241 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L1A12_RS05070 (L1A12_05070) | 1014896..1015063 | - | 168 | WP_001809348.1 | hypothetical protein | - |
| L1A12_RS05075 (L1A12_05075) | 1015149..1016327 | + | 1179 | WP_000174775.1 | hypothetical protein | - |
| L1A12_RS05080 (L1A12_05080) | 1016536..1022397 | + | 5862 | WP_000417147.1 | ZmpA/ZmpB/ZmpC family metallo-endopeptidase | - |
| L1A12_RS05085 (L1A12_05085) | 1023101..1023274 | + | 174 | WP_000159603.1 | hypothetical protein | - |
| L1A12_RS05090 (L1A12_05090) | 1023271..1024050 | + | 780 | WP_000822769.1 | replication initiator protein A | - |
| L1A12_RS05095 (L1A12_05095) | 1024149..1025507 | + | 1359 | WP_001210972.1 | DNA (cytosine-5-)-methyltransferase | - |
| L1A12_RS05100 (L1A12_05100) | 1025491..1025940 | + | 450 | WP_000645881.1 | hypothetical protein | - |
| L1A12_RS05105 (L1A12_05105) | 1025933..1026313 | + | 381 | WP_000566541.1 | hypothetical protein | - |
| L1A12_RS05110 (L1A12_05110) | 1026326..1026559 | + | 234 | WP_000840776.1 | hypothetical protein | - |
| L1A12_RS05115 (L1A12_05115) | 1026562..1027149 | + | 588 | WP_000821269.1 | type II CAAX endopeptidase family protein | - |
| L1A12_RS05120 (L1A12_05120) | 1027223..1027867 | + | 645 | WP_041974923.1 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | - |
| L1A12_RS05125 (L1A12_05125) | 1027867..1028703 | + | 837 | WP_000492401.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| L1A12_RS05130 (L1A12_05130) | 1028986..1029285 | + | 300 | WP_000869753.1 | hypothetical protein | - |
| L1A12_RS05135 (L1A12_05135) | 1029275..1029763 | + | 489 | WP_000093675.1 | hypothetical protein | - |
| L1A12_RS05140 (L1A12_05140) | 1029763..1031640 | + | 1878 | WP_001841466.1 | type IV secretory system conjugative DNA transfer family protein | - |
| L1A12_RS05145 (L1A12_05145) | 1031661..1031903 | + | 243 | WP_000627865.1 | hypothetical protein | - |
| L1A12_RS05150 (L1A12_05150) | 1031920..1032774 | + | 855 | WP_001054263.1 | conjugal transfer protein TrbL | - |
| L1A12_RS05155 (L1A12_05155) | 1032828..1033187 | + | 360 | WP_001097591.1 | PrgI family protein | - |
| L1A12_RS05160 (L1A12_05160) | 1033138..1035495 | + | 2358 | WP_000824170.1 | hypothetical protein | - |
| L1A12_RS05165 (L1A12_05165) | 1035507..1038320 | + | 2814 | WP_000653460.1 | phage tail tip lysozyme | - |
| L1A12_RS05170 (L1A12_05170) | 1038891..1039205 | + | 315 | WP_000420680.1 | YdcP family protein | - |
| L1A12_RS05175 (L1A12_05175) | 1039221..1039607 | + | 387 | WP_000985016.1 | DUF961 family protein | - |
| L1A12_RS05180 (L1A12_05180) | 1039647..1041041 | + | 1395 | WP_000813769.1 | FtsK/SpoIIIE domain-containing protein | - |
| L1A12_RS05185 (L1A12_05185) | 1041044..1041184 | + | 141 | WP_074186995.1 | conjugal transfer protein | - |
| L1A12_RS05190 (L1A12_05190) | 1041219..1042421 | + | 1203 | Protein_1031 | MobT family relaxase | - |
| L1A12_RS05195 (L1A12_05195) | 1042470..1042637 | + | 168 | WP_000502600.1 | MLS leader peptide | - |
| L1A12_RS05200 (L1A12_05200) | 1042686..1042739 | + | 54 | WP_117115223.1 | 23S rRNA methyltransferase attenuation leader peptide | - |
| L1A12_RS05205 (L1A12_05205) | 1042894..1043631 | + | 738 | WP_001038795.1 | rRNA adenine N-6-methyltransferase | ARG |
| L1A12_RS05210 (L1A12_05210) | 1043888..1045135 | - | 1248 | WP_000019067.1 | ISL3 family transposase IS1165 | Transposase |
| L1A12_RS05215 (L1A12_05215) | 1045315..1045536 | + | 222 | WP_001009056.1 | hypothetical protein | - |
| L1A12_RS05220 (L1A12_05220) | 1045653..1046150 | + | 498 | WP_000342539.1 | antirestriction protein ArdA | - |
| L1A12_RS05225 (L1A12_05225) | 1046239..1046631 | + | 393 | WP_002345009.1 | conjugal transfer protein | - |
| L1A12_RS05230 (L1A12_05230) | 1046615..1049062 | + | 2448 | WP_000331148.1 | ATP-binding protein | - |
| L1A12_RS05235 (L1A12_05235) | 1049065..1051248 | + | 2184 | WP_001841471.1 | membrane protein | - |
| L1A12_RS05240 (L1A12_05240) | 1051245..1052246 | + | 1002 | WP_000769862.1 | putative endopeptidase p60 | VF |
| L1A12_RS05245 (L1A12_05245) | 1052243..1053178 | + | 936 | WP_001224320.1 | conjugal transfer protein | - |
| L1A12_RS05250 (L1A12_05250) | 1053423..1053539 | + | 117 | WP_001791010.1 | tetracycline resistance determinant leader peptide | - |
| L1A12_RS05255 (L1A12_05255) | 1053555..1055474 | + | 1920 | WP_000691724.1 | Tetracycline resistance protein TetM from transposon Tn916 | VF |
| L1A12_RS05260 (L1A12_05260) | 1055593..1055760 | + | 168 | WP_000336323.1 | cysteine-rich KTR domain-containing protein | - |
| L1A12_RS05265 (L1A12_05265) | 1055820..1056173 | - | 354 | WP_001227347.1 | helix-turn-helix transcriptional regulator | - |
| L1A12_RS05270 (L1A12_05270) | 1056678..1057100 | + | 423 | WP_000804599.1 | sigma-70 family RNA polymerase sigma factor | - |
| L1A12_RS05275 (L1A12_05275) | 1057097..1057327 | + | 231 | WP_000857133.1 | helix-turn-helix domain-containing protein | - |
| L1A12_RS05280 (L1A12_05280) | 1057552..1057800 | - | 249 | Protein_1049 | hypothetical protein | - |
| L1A12_RS05285 (L1A12_05285) | 1057784..1057987 | + | 204 | WP_000814512.1 | excisionase | - |
| L1A12_RS05290 (L1A12_05290) | 1058069..1059286 | + | 1218 | WP_001291568.1 | Transposase from transposon Tn916 ; Integrase | Integrase |
| L1A12_RS05295 (L1A12_05295) | 1060172..1060903 | + | 732 | WP_000247939.1 | ABC transporter ATP-binding protein YxdL | VF |
| L1A12_RS05300 (L1A12_05300) | 1060921..1062237 | + | 1317 | WP_000915988.1 | FtsX-like permease family protein | - |
| L1A12_RS05305 (L1A12_05305) | 1062668..1063078 | + | 411 | WP_000387507.1 | thrombospondin type 3 repeat-containing protein | - |
| L1A12_RS05310 (L1A12_05310) | 1063126..1069338 | + | 6213 | WP_000452059.1 | DEAD/DEAH box helicase family protein | - |
| L1A12_RS05315 (L1A12_05315) | 1069413..1069697 | + | 285 | WP_000969646.1 | DUF5962 family protein | - |
| L1A12_RS05320 (L1A12_05320) | 1069711..1070007 | + | 297 | WP_000998894.1 | DUF5966 family protein | - |
| L1A12_RS05325 (L1A12_05325) | 1070021..1070218 | - | 198 | WP_001841477.1 | hypothetical protein | - |
| L1A12_RS05330 (L1A12_05330) | 1070378..1071019 | + | 642 | WP_000933083.1 | hypothetical protein | - |
| L1A12_RS05335 (L1A12_05335) | 1071029..1072114 | + | 1086 | WP_000401901.1 | toprim domain-containing protein | - |
| L1A12_RS05340 (L1A12_05340) | 1072165..1072398 | + | 234 | WP_000152419.1 | DUF5965 family protein | - |
| L1A12_RS05345 (L1A12_05345) | 1072395..1072778 | + | 384 | WP_000159222.1 | DUF5945 family protein | - |
| L1A12_RS05350 (L1A12_05350) | 1072816..1073088 | + | 273 | WP_000495438.1 | hypothetical protein | - |
| L1A12_RS05355 (L1A12_05355) | 1073156..1073632 | + | 477 | WP_000579617.1 | type II toxin-antitoxin system antitoxin PezA | Antitoxin Detail |
| L1A12_RS05360 (L1A12_05360) | 1073632..1074390 | + | 759 | WP_000354294.1 | type II toxin-antitoxin system toxin PezT | Toxin Detail |
| L1A12_RS05365 (L1A12_05365) | 1074866..1075654 | + | 789 | WP_000214003.1 | hypothetical protein | - |
| L1A12_RS05370 (L1A12_05370) | 1075893..1076141 | + | 249 | WP_001814254.1 | hypothetical protein | - |
| L1A12_RS05375 (L1A12_05375) | 1076312..1077031 | + | 720 | Protein_1068 | Chloramphenicol acetyltransferase | ARG |
| L1A12_RS05380 (L1A12_05380) | 1077827..1078750 | - | 924 | WP_074189357.1 | protein rep | - |
| L1A12_RS05385 (L1A12_05385) | 1078954..1079784 | + | 831 | Protein_1070 | alpha-amylase family glycosyl hydrolase | - |
| L1A12_RS05390 (L1A12_05390) | 1080052..1080507 | + | 456 | WP_025173603.1 | hypothetical protein | - |
| L1A12_RS05395 (L1A12_05395) | 1080783..1081259 | + | 477 | WP_000579612.1 | type II toxin-antitoxin system antitoxin PezA | Antitoxin Detail |
| L1A12_RS05400 (L1A12_05400) | 1081259..1082017 | + | 759 | WP_000405371.1 | type II toxin-antitoxin system toxin PezT | Toxin Detail |
| L1A12_RS05405 (L1A12_05405) | 1082281..1082964 | + | 684 | WP_000492702.1 | LexA family transcriptional regulator | - |
| L1A12_RS05410 (L1A12_05410) | 1082967..1084382 | + | 1416 | WP_000219662.1 | Y-family DNA polymerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|