MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 30305 bp
Accession: NZ_CP090548 Location: 1..30305 Organism: Xylella fastidiosa subsp. sandyi strain OC8 Replicon: plasmid pXF30-OC8
Accession: NZ_CP090548 Location: 1..30305 Organism: Xylella fastidiosa subsp. sandyi strain OC8 Replicon: plasmid pXF30-OC8
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LZ756_RS13115 (LZ756_13115) | 1..2415 | + | 2415 | WP_024748611.1 | Type IV secretion system protein virB4 | VF |
| LZ756_RS13120 (LZ756_13120) | 2418..3083 | + | 666 | WP_013087957.1 | Type IV secretion system protein virB5 | VF |
| LZ756_RS13125 (LZ756_13125) | 3359..4336 | + | 978 | WP_020852259.1 | type IV secretion system protein | - |
| LZ756_RS13130 (LZ756_13130) | 4340..5050 | + | 711 | WP_020852260.1 | Type IV secretion system protein PtlE | VF |
| LZ756_RS13135 (LZ756_13135) | 5047..5826 | + | 780 | WP_020852261.1 | Type IV secretion system protein virB9 | VF |
| LZ756_RS13140 (LZ756_13140) | 5829..7127 | + | 1299 | WP_020852262.1 | Type IV secretion system protein virB10 | VF |
| LZ756_RS13145 (LZ756_13145) | 7105..8148 | + | 1044 | WP_020852263.1 | Type IV secretion system protein VirB11 | VF |
| LZ756_RS13150 (LZ756_13150) | 8178..10421 | + | 2244 | WP_234759440.1 | Protein VirD4 | VF |
| LZ756_RS13155 (LZ756_13155) | 10434..11540 | + | 1107 | WP_020852265.1 | hypothetical protein | - |
| LZ756_RS13160 (LZ756_13160) | 11588..11875 | + | 288 | WP_020852266.1 | DUF4190 domain-containing protein | - |
| LZ756_RS13165 (LZ756_13165) | 12089..13051 | + | 963 | WP_230577909.1 | T-DNA border endonuclease VirD2 | Relaxase |
| LZ756_RS13170 (LZ756_13170) | 13110..13436 | - | 327 | WP_024748613.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| LZ756_RS13175 (LZ756_13175) | 13433..13696 | - | 264 | WP_013087943.1 | antitoxin | Antitoxin Detail |
| LZ756_RS13180 (LZ756_13180) | 13808..15016 | + | 1209 | WP_042836803.1 | IS200-IS605 family transposase IS609 | Transposase |
| LZ756_RS13185 (LZ756_13185) | 15165..15311 | - | 147 | WP_230577911.1 | hypothetical protein | - |
| LZ756_RS13190 (LZ756_13190) | 15330..15959 | - | 630 | WP_230577910.1 | hypothetical protein | Relaxase |
| LZ756_RS13195 (LZ756_13195) | 16333..16593 | + | 261 | WP_199276035.1 | hypothetical protein | - |
| LZ756_RS13200 (LZ756_13200) | 16606..17358 | + | 753 | WP_020852243.1 | hypothetical protein | - |
| LZ756_RS13205 (LZ756_13205) | 17359..17802 | + | 444 | WP_014607318.1 | hypothetical protein | - |
| LZ756_RS13210 (LZ756_13210) | 17933..18262 | - | 330 | WP_024748578.1 | type II toxin-antitoxin system YafQ family toxin | - |
| LZ756_RS13215 (LZ756_13215) | 18234..18512 | - | 279 | WP_024748579.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| LZ756_RS13220 (LZ756_13220) | 18569..18712 | - | 144 | Protein_22 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| LZ756_RS13225 (LZ756_13225) | 18777..19991 | - | 1215 | WP_042836805.1 | IS200-IS605 family transposase IS609 | Transposase |
| LZ756_RS13230 (LZ756_13230) | 20014..20427 | + | 414 | WP_024748685.1 | IS200/IS605 family transposase | - |
| LZ756_RS13235 (LZ756_13235) | 20537..20752 | - | 216 | WP_196230058.1 | antitoxin MazE family protein | - |
| LZ756_RS13240 (LZ756_13240) | 21281..22384 | - | 1104 | WP_020852248.1 | replication protein RepA | - |
| LZ756_RS13245 (LZ756_13245) | 22411..23013 | - | 603 | WP_020852249.1 | Tn3 family transposase TnBth3 | Transposase |
| LZ756_RS13250 (LZ756_13250) | 23151..23603 | - | 453 | WP_051404191.1 | type II toxin-antitoxin system VapC family toxin | - |
| LZ756_RS13255 (LZ756_13255) | 23603..23857 | - | 255 | WP_024748605.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| LZ756_RS13260 (LZ756_13260) | 24215..24364 | + | 150 | WP_230577912.1 | recombinase family protein | - |
| LZ756_RS13265 (LZ756_13265) | 24825..26321 | + | 1497 | WP_020852252.1 | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | - |
| LZ756_RS13270 (LZ756_13270) | 26894..27070 | + | 177 | WP_196230051.1 | hypothetical protein | - |
| LZ756_RS13275 (LZ756_13275) | 27074..27494 | + | 421 | Protein_33 | virulence factor | - |
| LZ756_RS13280 (LZ756_13280) | 27567..27917 | + | 351 | WP_020852254.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LZ756_RS13285 (LZ756_13285) | 27914..28237 | + | 324 | WP_020852255.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| LZ756_RS13290 (LZ756_13290) | 28277..28496 | + | 220 | Protein_36 | GNAT family N-acetyltransferase | - |
| LZ756_RS13295 (LZ756_13295) | 28971..29150 | + | 180 | WP_014607310.1 | hypothetical protein | - |
| LZ756_RS13300 (LZ756_13300) | 29153..29632 | + | 480 | WP_020852256.1 | hypothetical protein | - |
| LZ756_RS13305 (LZ756_13305) | 29635..29955 | + | 321 | WP_020852257.1 | TrbC/VirB2 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|