MGE detailed information
MGE type: Prophage MGE length: 42338 bp
Accession: NZ_CP090535 Location: 2106214..2148551 Organism: Salmonella enterica strain 2016089-SE Replicon: chromosome
Accession: NZ_CP090535 Location: 2106214..2148551 Organism: Salmonella enterica strain 2016089-SE Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L0F58_RS10285 () | 2102407..2103303 | - | 897 | WP_010989032.1 | DUF4034 domain-containing protein | - |
| L0F58_RS10290 () | 2103723..2104334 | + | 612 | WP_000580335.1 | Holliday junction branch migration protein RuvA | - |
| L0F58_RS10295 () | 2104343..2105353 | + | 1011 | WP_000568508.1 | Holliday junction branch migration DNA helicase RuvB | - |
| L0F58_RS10300 () | 2105432..2106217 | - | 786 | WP_000571508.1 | zinc ABC transporter permease subunit ZnuB | - |
| L0F58_RS10305 () | 2106214..2106969 | - | 756 | WP_000203014.1 | Zinc import ATP-binding protein ZnuC | VF |
| L0F58_RS10310 () | 2107048..2107992 | + | 945 | WP_000939597.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| L0F58_RS10315 () | 2108008..2109327 | + | 1320 | WP_001184028.1 | murein DD-endopeptidase MepM | - |
| L0F58_RS10320 () | 2109444..2110415 | + | 972 | WP_000448401.1 | Lipid A biosynthesis myristoyltransferase | VF |
| L0F58_RS10325 () | 2110488..2111930 | - | 1443 | WP_000091156.1 | pyruvate kinase | - |
| L0F58_RS10330 () | 2112054..2112923 | - | 870 | WP_001056720.1 | MurR/RpiR family transcriptional regulator | - |
| L0F58_RS10335 () | 2113265..2114740 | + | 1476 | WP_000301711.1 | glucose-6-phosphate dehydrogenase | - |
| L0F58_RS10340 () | 2114975..2116786 | + | 1812 | WP_001069113.1 | phosphogluconate dehydratase | - |
| L0F58_RS10345 () | 2116824..2117465 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| L0F58_RS10350 () | 2117565..2118743 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| L0F58_RS10355 () | 2118874..2119164 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| L0F58_RS10360 () | 2119232..2119585 | + | 354 | WP_001042119.1 | protein YebF | - |
| L0F58_RS10365 () | 2119679..2120338 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| L0F58_RS10370 () | 2120551..2122602 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| L0F58_RS10375 () | 2122637..2123335 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| L0F58_RS10380 () | 2123359..2124015 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| L0F58_RS10385 () | 2124123..2124353 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| L0F58_RS10390 () | 2124491..2124865 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| L0F58_RS10395 () | 2124866..2125741 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| L0F58_RS10400 () | 2125758..2126111 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2126211..2126356 | - | 146 | - | - | Antitoxin Detail |
| - | 2126251..2126354 | + | 104 | - | - | Toxin Detail |
| L0F58_RS10405 () | 2126485..2127408 | - | 924 | Protein_2038 | hypothetical protein ; Integrase | Integrase |
| L0F58_RS10410 () | 2127672..2128133 | - | 462 | Protein_2039 | DNA breaking-rejoining protein | - |
| L0F58_RS10415 () | 2128122..2128313 | + | 192 | Protein_2040 | glycoside hydrolase family 19 protein | - |
| L0F58_RS10420 () | 2128367..2128900 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| L0F58_RS10425 () | 2129157..2129324 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| L0F58_RS10430 () | 2129389..2129577 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| L0F58_RS10435 () | 2129632..2129892 | + | 261 | Protein_2044 | DUF1441 family protein | - |
| L0F58_RS10440 () | 2130107..2130451 | + | 345 | Protein_2045 | macro domain-containing protein | - |
| L0F58_RS10445 () | 2130461..2130931 | + | 471 | Protein_2046 | tail fiber assembly protein | - |
| L0F58_RS10450 () | 2131028..2131228 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| L0F58_RS10455 () | 2131618..2131798 | - | 181 | Protein_2048 | IS3 family transposase | - |
| L0F58_RS10460 () | 2131789..2131890 | + | 102 | Protein_2049 | arsenic transporter | - |
| L0F58_RS10465 () | 2132512..2132744 | + | 233 | Protein_2050 | helix-turn-helix domain-containing protein | - |
| L0F58_RS10470 () | 2133071..2133685 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| L0F58_RS10475 () | 2133695..2133853 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| L0F58_RS10480 () | 2133986..2134900 | - | 915 | WP_001233446.1 | DMT family transporter | - |
| L0F58_RS10485 () | 2136213..2136635 | - | 423 | Protein_2054 | hypothetical protein ; Integrase | Integrase |
| L0F58_RS10490 () | 2136705..2137899 | + | 1195 | Protein_2055 | IS256 family transposase IS285 | Transposase |
| L0F58_RS10495 () | 2138045..2138185 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| L0F58_RS10500 () | 2138351..2138620 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| L0F58_RS10505 () | 2138990..2139409 | + | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| L0F58_RS10510 () | 2139797..2140273 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| L0F58_RS10515 () | 2140603..2140998 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| L0F58_RS10520 () | 2141681..2142403 | + | 723 | WP_125670228.1 | Guanine nucleotide exchange factor sopE2 | VF |
| L0F58_RS10525 () | 2142688..2142852 | + | 165 | WP_001134856.1 | membrane protein | - |
| L0F58_RS10530 () | 2143076..2143726 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| L0F58_RS10535 () | 2143745..2143936 | - | 192 | WP_000457836.1 | YebW family protein | - |
| L0F58_RS10540 () | 2144047..2144283 | - | 237 | WP_024131108.1 | YebV family protein | - |
| L0F58_RS10545 () | 2144401..2145840 | - | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| L0F58_RS10550 () | 2145918..2148551 | - | 2634 | WP_001535256.1 | hypothetical protein | VF |
| L0F58_RS10555 () | 2148520..2149803 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| L0F58_RS10560 () | 2149932..2150429 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| L0F58_RS10565 () | 2150527..2151213 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| L0F58_RS10570 () | 2151233..2153281 | + | 2049 | WP_033567178.1 | carboxy terminal-processing peptidase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Prophage | TA25947 | NC_016810 | 1910986..1947632 | 0.006 |