MGE detailed information
MGE type: Conjugative plasmid MGE length: 97598 bp
Accession: NZ_CP090197 Location: 1..97598 Organism: Escherichia coli strain YL3 Replicon: plasmid p1
Accession: NZ_CP090197 Location: 1..97598 Organism: Escherichia coli strain YL3 Replicon: plasmid p1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LXN07_RS24480 (4) | 4..261 | + | 258 | WP_000864353.1 | conjugal transfer protein TrbE | - |
| LXN07_RS24485 (254) | 254..997 | + | 744 | WP_001030371.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| LXN07_RS24490 (1011) | 1011..1352 | + | 342 | WP_000556795.1 | conjugal transfer protein TrbA | - |
| LXN07_RS24495 (1333) | 1333..1668 | - | 336 | WP_000736414.1 | hypothetical protein | - |
| LXN07_RS24500 (1749) | 1749..2033 | + | 285 | WP_000624107.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| LXN07_RS24505 (2020) | 2020..2565 | + | 546 | WP_000059830.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| LXN07_RS24510 (2495) | 2495..2842 | + | 348 | WP_011666494.1 | P-type conjugative transfer protein TrbJ | - |
| LXN07_RS24515 (2823) | 2823..3215 | + | 393 | WP_000659962.1 | F-type conjugal transfer protein TrbF | - |
| LXN07_RS24520 (3202) | 3202..4575 | + | 1374 | WP_000944331.1 | conjugal transfer pilus assembly protein TraH | - |
| LXN07_RS24525 (4572) | 4572..7397 | + | 2826 | WP_012881124.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| LXN07_RS24530 (7394) | 7394..7903 | + | 510 | WP_000628111.1 | conjugal transfer entry exclusion protein TraS | - |
| LXN07_RS24535 (7938) | 7938..8648 | + | 711 | WP_064773071.1 | conjugal transfer complement resistance protein TraT | - |
| LXN07_RS24540 (8851) | 8851..9486 | + | 636 | Protein_12 | hypothetical protein | - |
| LXN07_RS24550 (10952) | 10952..13204 | + | 2253 | WP_257120053.1 | type IV conjugative transfer system coupling protein TraD | - |
| LXN07_RS24555 (13204) | 13204..18474 | + | 5271 | WP_000948349.1 | Multifunctional conjugation protein TraI | Relaxase |
| LXN07_RS24560 (18494) | 18494..19240 | + | 747 | WP_059338983.1 | conjugal transfer pilus acetylase TraX | - |
| LXN07_RS24565 (19299) | 19299..20159 | + | 861 | WP_000704523.1 | putative protein YcjY | VF |
| LXN07_RS24570 (20262) | 20262..20822 | + | 561 | WP_000139321.1 | fertility inhibition protein FinO | - |
| LXN07_RS24575 (20951) | 20951..21163 | + | 213 | WP_001309245.1 | ANR family transcriptional regulator | - |
| LXN07_RS24580 (21408) | 21408..21869 | + | 462 | WP_001233838.1 | thermonuclease family protein | - |
| LXN07_RS24585 (21915) | 21915..22124 | + | 210 | WP_001298565.1 | hemolysin expression modulator Hha | - |
| LXN07_RS24590 (22162) | 22162..22752 | + | 591 | WP_033807967.1 | DUF2726 domain-containing protein | - |
| LXN07_RS24595 (22907) | 22907..23380 | + | 474 | WP_016240489.1 | hypothetical protein | - |
| - (23523) | 23523..23582 | - | 60 | NuclAT_1 | - | - |
| - (23523) | 23523..23582 | - | 60 | NuclAT_1 | - | - |
| - (23523) | 23523..23582 | - | 60 | NuclAT_1 | - | - |
| - (23523) | 23523..23582 | - | 60 | NuclAT_1 | - | - |
| LXN07_RS24600 (23627) | 23627..23776 | + | 150 | WP_001312851.1 | Hok/Gef family protein | - |
| LXN07_RS24605 (24061) | 24061..24309 | + | 249 | WP_000083839.1 | replication regulatory protein RepA | - |
| LXN07_RS24610 (24554) | 24554..24628 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| LXN07_RS24615 (24621) | 24621..25478 | + | 858 | WP_016240488.1 | incFII family plasmid replication initiator RepA | - |
| LXN07_RS24620 (26179) | 26179..26337 | + | 159 | WP_032142560.1 | hypothetical protein | - |
| LXN07_RS24625 (26392) | 26392..26661 | + | 270 | WP_012881119.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| LXN07_RS24630 (26661) | 26661..26939 | + | 279 | WP_244449344.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| LXN07_RS24635 (26985) | 26985..27833 | + | 849 | WP_012881117.1 | 3'-5' exonuclease | - |
| LXN07_RS24640 (27950) | 27950..28432 | + | 483 | WP_001311056.1 | hypothetical protein | - |
| LXN07_RS24645 (28461) | 28461..29537 | - | 1077 | WP_077252865.1 | IS5 family transposase IS903B | Transposase |
| LXN07_RS24650 (29538) | 29538..29945 | - | 408 | Protein_34 | IS5 family transposase IS903B | Transposase |
| LXN07_RS24655 (30025) | 30025..30900 | - | 876 | WP_001617865.1 | Beta-lactamase CTX-M-97 | ARG |
| LXN07_RS24660 (31150) | 31150..32412 | - | 1263 | WP_000608644.1 | IS1380 family transposase ISEcp1 | Transposase |
| LXN07_RS24665 (32756) | 32756..33943 | - | 1188 | WP_025999368.1 | MFS transporter | - |
| LXN07_RS24670 (34000) | 34000..34761 | - | 762 | WP_000020504.1 | Fe(3+) dicitrate transport ATP-binding protein FecE | VF |
| LXN07_RS24675 (34761) | 34761..35798 | - | 1038 | WP_001545318.1 | Hemin transport system permease protein HmuU | VF |
| LXN07_RS24680 (35798) | 35798..36796 | - | 999 | WP_012881113.1 | ABC transporter substrate-binding protein | - |
| LXN07_RS24685 (36946) | 36946..37104 | - | 159 | Protein_41 | integrase core domain-containing protein | - |
| LXN07_RS24690 (37147) | 37147..37389 | - | 243 | Protein_42 | recombinase family protein | - |
| LXN07_RS24695 (37647) | 37647..37997 | - | 351 | WP_001414994.1 | plasmid partitioning/stability family protein | - |
| LXN07_RS24700 (38000) | 38000..38962 | - | 963 | WP_000959878.1 | plasmid segregation protein ParM | - |
| LXN07_RS24705 (39109) | 39109..39402 | + | 294 | WP_257120054.1 | hypothetical protein | - |
| LXN07_RS24710 (39478) | 39478..40161 | + | 684 | WP_012881149.1 | DNA methylase | - |
| LXN07_RS24715 (40162) | 40162..40383 | + | 222 | WP_012881148.1 | hypothetical protein | - |
| LXN07_RS24720 (40397) | 40397..40831 | + | 435 | WP_012917669.1 | DUF1380 family protein | - |
| LXN07_RS24725 (40882) | 40882..41658 | + | 777 | WP_025999342.1 | hypothetical protein | - |
| LXN07_RS24730 (42074) | 42074..42499 | + | 426 | WP_001198895.1 | antirestriction protein | - |
| LXN07_RS24735 (42546) | 42546..42968 | + | 423 | WP_012917670.1 | DUF1380 family protein | - |
| LXN07_RS24740 (42965) | 42965..43156 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| LXN07_RS24745 (43473) | 43473..45140 | - | 1668 | WP_117313998.1 | group II intron reverse transcriptase/maturase | - |
| LXN07_RS24750 (45869) | 45869..46023 | - | 155 | Protein_54 | hypothetical protein | - |
| LXN07_RS24755 (46536) | 46536..46766 | + | 231 | WP_000155844.1 | hypothetical protein | - |
| LXN07_RS24760 (46818) | 46818..48179 | + | 1362 | WP_012917672.1 | DUF3560 domain-containing protein | - |
| LXN07_RS24765 (48226) | 48226..48789 | + | 564 | WP_012881140.1 | class I SAM-dependent methyltransferase | - |
| LXN07_RS24770 (48875) | 48875..49003 | - | 129 | Protein_58 | pilus protein | - |
| LXN07_RS24775 (49211) | 49211..50473 | - | 1263 | WP_000608644.1 | IS1380 family transposase ISEcp1 | Transposase |
| LXN07_RS24780 (50817) | 50817..52004 | - | 1188 | WP_025999368.1 | MFS transporter | - |
| LXN07_RS24785 (52061) | 52061..52822 | - | 762 | WP_000020504.1 | Fe(3+) dicitrate transport ATP-binding protein FecE | VF |
| LXN07_RS24790 (52822) | 52822..53859 | - | 1038 | WP_001545318.1 | Hemin transport system permease protein HmuU | VF |
| LXN07_RS24795 (53859) | 53859..54857 | - | 999 | WP_012881113.1 | ABC transporter substrate-binding protein | - |
| LXN07_RS24800 (55007) | 55007..55165 | - | 159 | Protein_64 | integrase core domain-containing protein | - |
| LXN07_RS24805 (55208) | 55208..55450 | - | 243 | Protein_65 | recombinase family protein | - |
| LXN07_RS24810 (55708) | 55708..56058 | - | 351 | WP_001414994.1 | plasmid partitioning/stability family protein | - |
| LXN07_RS24815 (56061) | 56061..57023 | - | 963 | WP_000959878.1 | plasmid segregation protein ParM | - |
| LXN07_RS24820 (57170) | 57170..57463 | + | 294 | WP_257120054.1 | hypothetical protein | - |
| LXN07_RS24825 (57539) | 57539..58222 | + | 684 | WP_257120051.1 | DNA methylase | - |
| LXN07_RS24830 (58223) | 58223..58444 | + | 222 | WP_012881148.1 | hypothetical protein | - |
| LXN07_RS24835 (58458) | 58458..58892 | + | 435 | WP_012917669.1 | DUF1380 family protein | - |
| LXN07_RS24840 (58943) | 58943..59719 | + | 777 | WP_025999342.1 | hypothetical protein | - |
| LXN07_RS24845 (60135) | 60135..60560 | + | 426 | WP_001198895.1 | antirestriction protein | - |
| LXN07_RS24850 (60607) | 60607..61029 | + | 423 | WP_012917670.1 | DUF1380 family protein | - |
| LXN07_RS24855 (61026) | 61026..61217 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| LXN07_RS24860 (61534) | 61534..63201 | - | 1668 | WP_117313998.1 | group II intron reverse transcriptase/maturase | - |
| LXN07_RS24865 (63930) | 63930..64084 | - | 155 | Protein_77 | hypothetical protein | - |
| LXN07_RS24870 (64597) | 64597..64827 | + | 231 | WP_000155844.1 | hypothetical protein | - |
| LXN07_RS24875 (64879) | 64879..66240 | + | 1362 | WP_012917672.1 | DUF3560 domain-containing protein | - |
| LXN07_RS24880 (66287) | 66287..66850 | + | 564 | WP_012881140.1 | class I SAM-dependent methyltransferase | - |
| LXN07_RS24885 (66936) | 66936..67100 | - | 165 | Protein_81 | hypothetical protein | - |
| LXN07_RS24890 (67213) | 67213..68880 | - | 1668 | WP_117313998.1 | group II intron reverse transcriptase/maturase | - |
| LXN07_RS24895 (69609) | 69609..69782 | - | 174 | Protein_83 | hypothetical protein | - |
| LXN07_RS24900 (70084) | 70084..70605 | + | 522 | WP_012881138.1 | single-stranded DNA-binding protein | - |
| LXN07_RS24905 (70661) | 70661..70894 | + | 234 | WP_000005971.1 | DUF905 domain-containing protein | - |
| LXN07_RS24910 (70958) | 70958..72916 | + | 1959 | WP_257120052.1 | ParB/RepB/Spo0J family partition protein | - |
| LXN07_RS24915 (72971) | 72971..73405 | + | 435 | WP_000845949.1 | conjugation system SOS inhibitor PsiB | - |
| LXN07_RS24920 (73402) | 73402..74121 | + | 720 | WP_012881136.1 | plasmid SOS inhibition protein A | - |
| LXN07_RS24925 (74118) | 74118..74432 | + | 315 | WP_000872086.1 | hypothetical protein | - |
| - (74381) | 74381..74588 | + | 208 | NuclAT_0 | - | - |
| - (74381) | 74381..74588 | + | 208 | NuclAT_0 | - | - |
| - (74381) | 74381..74588 | + | 208 | NuclAT_0 | - | - |
| - (74381) | 74381..74588 | + | 208 | NuclAT_0 | - | - |
| LXN07_RS24930 (74622) | 74622..74735 | + | 114 | Protein_90 | DUF5431 family protein | - |
| LXN07_RS24935 (74680) | 74680..74802 | + | 123 | WP_223412041.1 | Hok/Gef family protein | Toxin Detail |
| LXN07_RS24940 (75103) | 75103..75352 | - | 250 | Protein_92 | hypothetical protein | - |
| LXN07_RS24945 (75648) | 75648..75971 | + | 324 | WP_000533253.1 | hypothetical protein | - |
| LXN07_RS24950 (76030) | 76030..76272 | + | 243 | WP_000540588.1 | hypothetical protein | - |
| LXN07_RS24955 (76472) | 76472..76624 | - | 153 | Protein_95 | hypothetical protein | - |
| LXN07_RS24960 (76737) | 76737..78404 | - | 1668 | WP_117313998.1 | group II intron reverse transcriptase/maturase | - |
| LXN07_RS24965 (79133) | 79133..79306 | - | 174 | Protein_97 | hypothetical protein | - |
| LXN07_RS24970 (79606) | 79606..79902 | + | 297 | WP_001272251.1 | hypothetical protein | - |
| LXN07_RS24975 (80012) | 80012..80833 | + | 822 | WP_001234437.1 | DUF932 domain-containing protein | - |
| LXN07_RS24980 (81129) | 81129..81719 | - | 591 | WP_000252686.1 | hypothetical protein | VF |
| LXN07_RS24985 (82052) | 82052..82435 | + | 384 | WP_001151529.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| LXN07_RS24990 (82627) | 82627..83274 | + | 648 | WP_000332523.1 | transcriptional regulator TraJ family protein | - |
| LXN07_RS24995 (83394) | 83394..83621 | + | 228 | WP_000589556.1 | conjugal transfer relaxosome protein TraY | - |
| LXN07_RS25000 (83655) | 83655..84017 | + | 363 | WP_012881131.1 | type IV conjugative transfer system pilin TraA | - |
| LXN07_RS25005 (84032) | 84032..84343 | + | 312 | WP_000012100.1 | type IV conjugative transfer system protein TraL | - |
| LXN07_RS25010 (84365) | 84365..84931 | + | 567 | WP_000399780.1 | type IV conjugative transfer system protein TraE | - |
| LXN07_RS25015 (84918) | 84918..85646 | + | 729 | WP_001230769.1 | type-F conjugative transfer system secretin TraK | - |
| LXN07_RS25020 (85646) | 85646..87073 | + | 1428 | WP_012881130.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| LXN07_RS25025 (87063) | 87063..87653 | + | 591 | WP_012881129.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| LXN07_RS25030 (87640) | 87640..87960 | + | 321 | WP_012881128.1 | conjugal transfer protein TrbD | - |
| LXN07_RS25035 (87957) | 87957..88472 | + | 516 | WP_000809881.1 | type IV conjugative transfer system lipoprotein TraV | - |
| LXN07_RS25040 (88607) | 88607..88828 | + | 222 | WP_001278683.1 | conjugal transfer protein TraR | - |
| LXN07_RS25045 (88821) | 88821..89297 | + | 477 | WP_012881127.1 | hypothetical protein | - |
| LXN07_RS25050 (89396) | 89396..89614 | + | 219 | WP_000556745.1 | hypothetical protein | - |
| LXN07_RS25055 (89642) | 89642..89989 | + | 348 | WP_000836682.1 | hypothetical protein | - |
| LXN07_RS25060 (90115) | 90115..92745 | + | 2631 | WP_000069772.1 | type IV secretion system protein TraC | - |
| LXN07_RS25065 (92742) | 92742..93128 | + | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| LXN07_RS25070 (93125) | 93125..93757 | + | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| LXN07_RS25075 (93754) | 93754..94746 | + | 993 | WP_000830849.1 | conjugal transfer pilus assembly protein TraU | - |
| LXN07_RS25080 (94776) | 94776..95081 | + | 306 | WP_000224418.1 | hypothetical protein | - |
| LXN07_RS25085 (95090) | 95090..95728 | + | 639 | WP_015058995.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| LXN07_RS25090 (95725) | 95725..97575 | + | 1851 | WP_012881125.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|