MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 71258 bp
Accession: NZ_CP089943 Location: 1..71258 Organism: Erwinia tracheiphila strain MDCuke Replicon: plasmid pETR001-a
Accession: NZ_CP089943 Location: 1..71258 Organism: Erwinia tracheiphila strain MDCuke Replicon: plasmid pETR001-a
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LU604_RS25860 (LU604_25860) | 214..3603 | + | 3390 | WP_233481656.1 | DUF5710 domain-containing protein | - |
| LU604_RS25865 (LU604_25865) | 3611..4054 | + | 444 | WP_233480935.1 | hypothetical protein | - |
| LU604_RS25870 (LU604_25870) | 4155..4775 | + | 621 | WP_233480936.1 | hypothetical protein | VF |
| LU604_RS25875 (LU604_25875) | 4791..5798 | + | 1008 | WP_233481657.1 | hypothetical protein | VF |
| LU604_RS25880 (LU604_25880) | 5801..7060 | + | 1260 | WP_233480938.1 | conjugal transfer protein TraO | - |
| LU604_RS25885 (LU604_25885) | 7072..7866 | + | 795 | WP_233480939.1 | hypothetical protein | - |
| LU604_RS25890 (LU604_25890) | 7866..8393 | + | 528 | WP_233480940.1 | conjugal transfer protein TraQ | - |
| LU604_RS25895 (LU604_25895) | 8420..8803 | + | 384 | WP_233480941.1 | hypothetical protein | - |
| LU604_RS25900 (LU604_25900) | 8855..9808 | + | 954 | WP_233480942.1 | hypothetical protein | - |
| LU604_RS25905 (LU604_25905) | 9832..12909 | + | 3078 | WP_233480943.1 | ATP-binding protein | - |
| LU604_RS25910 (LU604_25910) | 12924..14120 | + | 1197 | WP_233480944.1 | conjugal transfer protein TraW | - |
| LU604_RS25915 (LU604_25915) | 14117..14629 | + | 513 | WP_233480945.1 | conjugal transfer protein TraX | - |
| LU604_RS25920 (LU604_25920) | 14654..16825 | + | 2172 | WP_233480946.1 | DotA/TraY family protein | - |
| LU604_RS25925 (LU604_25925) | 16915..17166 | + | 252 | WP_233480947.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| LU604_RS25930 (LU604_25930) | 17163..17450 | + | 288 | WP_233480948.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LU604_RS25935 (LU604_25935) | 17467..18147 | + | 681 | WP_233480949.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| LU604_RS25940 (LU604_25940) | 18233..19504 | + | 1272 | WP_233480950.1 | conjugal transfer protein TrbA | - |
| LU604_RS25945 (LU604_25945) | 19509..20573 | + | 1065 | WP_233480951.1 | thioredoxin fold domain-containing protein | - |
| LU604_RS25950 (LU604_25950) | 20584..22914 | + | 2331 | WP_233480952.1 | hypothetical protein | VF |
| LU604_RS25955 (LU604_25955) | 22835..23356 | + | 522 | WP_233481658.1 | Phospholipase D | VF |
| LU604_RS25960 (LU604_25960) | 23680..24204 | - | 525 | WP_233480954.1 | hypothetical protein | - |
| LU604_RS25965 (LU604_25965) | 24219..26150 | - | 1932 | WP_233480955.1 | Protein TraI | Relaxase |
| LU604_RS25970 (LU604_25970) | 26152..26496 | - | 345 | WP_233480956.1 | plasmid mobilization protein MobA | - |
| LU604_RS25975 (LU604_25975) | 26775..27086 | + | 312 | WP_233480957.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| LU604_RS25980 (LU604_25980) | 27260..28093 | - | 834 | WP_233480958.1 | DUF932 domain-containing protein | - |
| LU604_RS25985 (LU604_25985) | 28512..28778 | - | 267 | WP_233480959.1 | hypothetical protein | - |
| LU604_RS25990 (LU604_25990) | 28871..29311 | - | 441 | WP_233480960.1 | DUF1419 domain-containing protein | - |
| LU604_RS25995 (LU604_25995) | 29277..29435 | - | 159 | WP_233480961.1 | hypothetical protein | - |
| LU604_RS26000 (LU604_26000) | 29941..30180 | + | 240 | WP_233480962.1 | helix-turn-helix transcriptional regulator | - |
| LU604_RS26005 (LU604_26005) | 30742..30888 | - | 147 | Protein_30 | hypothetical protein | - |
| LU604_RS26010 (LU604_26010) | 30945..31523 | - | 579 | WP_233480963.1 | antirestriction protein | - |
| LU604_RS26015 (LU604_26015) | 31941..32255 | - | 315 | WP_233480964.1 | type II toxin-antitoxin system MqsA family antitoxin | Antitoxin Detail |
| LU604_RS26020 (LU604_26020) | 32248..32592 | - | 345 | WP_233480965.1 | toxin | Toxin Detail |
| LU604_RS26025 (LU604_26025) | 32845..33147 | - | 303 | WP_233480966.1 | methyltransferase | - |
| LU604_RS26030 (LU604_26030) | 33296..33559 | - | 264 | Protein_35 | transposase | - |
| LU604_RS26035 (LU604_26035) | 33648..34580 | + | 933 | WP_233481439.1 | IS91 family transposase ISVa3 | Transposase |
| LU604_RS27155 | 34537..34872 | + | 336 | WP_267938798.1 | IS91 family transposase ISVa3 | Transposase |
| LU604_RS26040 (LU604_26040) | 35102..35980 | + | 879 | WP_267938747.1 | IS91 family transposase ISVa3 | Transposase |
| LU604_RS27160 | 35992..36327 | + | 336 | WP_267938798.1 | IS91 family transposase ISVa3 | Transposase |
| LU604_RS26045 (LU604_26045) | 36961..38229 | + | 1269 | WP_233480901.1 | aspartate aminotransferase family protein | - |
| LU604_RS26050 (LU604_26050) | 38229..39302 | + | 1074 | WP_233480902.1 | alcohol dehydrogenase catalytic domain-containing protein | - |
| LU604_RS26055 (LU604_26055) | 39299..39937 | + | 639 | WP_233480903.1 | HAD family phosphatase | - |
| LU604_RS26060 (LU604_26060) | 40000..41145 | + | 1146 | WP_233480904.1 | MFS transporter | - |
| LU604_RS26065 (LU604_26065) | 41194..41772 | + | 579 | WP_233480905.1 | DUF1349 domain-containing protein | - |
| LU604_RS26070 (LU604_26070) | 41908..42078 | - | 171 | Protein_45 | helix-turn-helix domain-containing protein | - |
| LU604_RS26075 (LU604_26075) | 42273..42773 | - | 501 | Protein_46 | Tn3 family transposase TnpA_Tn3 | Transposase |
| LU604_RS26080 (LU604_26080) | 42777..42884 | + | 108 | Protein_47 | IS6 family transposase | - |
| LU604_RS26085 (LU604_26085) | 43192..43818 | + | 627 | WP_233480906.1 | ParA family plasmid-partitioning AAA ATPase | - |
| LU604_RS26090 (LU604_26090) | 43815..44117 | + | 303 | WP_233480907.1 | hypothetical protein | - |
| LU604_RS26095 (LU604_26095) | 44215..44394 | - | 180 | WP_233480908.1 | ribbon-helix-helix domain-containing protein | - |
| LU604_RS26100 (LU604_26100) | 44585..45937 | - | 1353 | WP_267932947.1 | hypothetical protein | - |
| LU604_RS26105 (LU604_26105) | 45946..46731 | - | 786 | WP_233480910.1 | site-specific integrase | - |
| LU604_RS26110 (LU604_26110) | 46770..47381 | - | 612 | WP_233480911.1 | hypothetical protein | - |
| LU604_RS26115 (LU604_26115) | 47448..47756 | - | 309 | WP_233480912.1 | DUF3426 domain-containing protein | - |
| LU604_RS26120 (LU604_26120) | 49436..50659 | + | 1224 | WP_233478549.1 | IS91 family transposase ISVa3 | Transposase |
| LU604_RS26125 (LU604_26125) | 50889..51767 | + | 879 | WP_267938747.1 | IS91 family transposase ISVa3 | Transposase |
| LU604_RS27165 | 51779..52114 | + | 336 | WP_233481440.1 | IS91 family transposase ISVa3 | Transposase |
| LU604_RS26130 (LU604_26130) | 52201..52971 | + | 771 | WP_233480913.1 | hypothetical protein | - |
| LU604_RS26135 (LU604_26135) | 53879..54781 | - | 903 | WP_233480914.1 | Replication protein | - |
| LU604_RS26140 (LU604_26140) | 56526..56984 | + | 459 | WP_233480915.1 | transcription termination/antitermination NusG family protein | - |
| LU604_RS26145 (LU604_26145) | 57079..57327 | + | 249 | WP_233480916.1 | hypothetical protein | - |
| LU604_RS26150 (LU604_26150) | 57345..57545 | + | 201 | WP_233480917.1 | hypothetical protein | - |
| LU604_RS26155 (LU604_26155) | 57623..58630 | + | 1008 | WP_233481654.1 | hypothetical protein | VF |
| LU604_RS26160 (LU604_26160) | 58630..59064 | + | 435 | WP_233480919.1 | type IV pilus biogenesis protein PilM | - |
| LU604_RS26165 (LU604_26165) | 59083..60714 | + | 1632 | WP_233481655.1 | Outer membrane lipoprotein BfpB | VF |
| LU604_RS26170 (LU604_26170) | 60717..62012 | + | 1296 | WP_233480921.1 | type 4b pilus protein PilO2 | - |
| LU604_RS26175 (LU604_26175) | 61999..62559 | + | 561 | WP_233480922.1 | type IV pilus biogenesis protein PilP | - |
| LU604_RS26180 (LU604_26180) | 62567..64072 | + | 1506 | WP_233480923.1 | Type II secretion system protein E | VF |
| LU604_RS26185 (LU604_26185) | 64069..65202 | + | 1134 | WP_233480924.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| LU604_RS26190 (LU604_26190) | 65263..65856 | + | 594 | WP_233480925.1 | hypothetical protein | VF |
| LU604_RS26195 (LU604_26195) | 65926..66402 | + | 477 | WP_233480926.1 | hypothetical protein | VF |
| LU604_RS26200 (LU604_26200) | 66447..67064 | + | 618 | WP_233480927.1 | hypothetical protein | VF |
| LU604_RS26205 (LU604_26205) | 67070..68461 | + | 1392 | WP_233480928.1 | hypothetical protein | VF |
| LU604_RS26210 (LU604_26210) | 68494..68697 | + | 204 | WP_233480929.1 | hypothetical protein | - |
| LU604_RS26215 (LU604_26215) | 68808..69260 | + | 453 | WP_233481659.1 | DotD/TraH family lipoprotein | - |
| LU604_RS26220 (LU604_26220) | 69257..70045 | + | 789 | WP_233480930.1 | hypothetical protein | VF |
| LU604_RS26225 (LU604_26225) | 70042..71199 | + | 1158 | WP_233480931.1 | Twitching mobility protein | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|