MGE detailed information
MGE type: Genomic_island MGE length: 10390 bp
Accession: NZ_CP089313 Location: 1062833..1073222 Organism: Salmonella enterica subsp. enterica serovar Indiana strain YZ21MCS4 Replicon: chromosome
Accession: NZ_CP089313 Location: 1062833..1073222 Organism: Salmonella enterica subsp. enterica serovar Indiana strain YZ21MCS4 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LT987_RS05190 (1059347) | 1059347..1059745 | + | 399 | Protein_1020 | cytoplasmic protein | - |
| LT987_RS05195 (1060331) | 1060331..1060999 | + | 669 | WP_000445914.1 | hypothetical protein | - |
| LT987_RS05200 (1061026) | 1061026..1061520 | + | 495 | WP_023227564.1 | hypothetical protein | - |
| LT987_RS05205 (1061765) | 1061765..1062421 | - | 657 | WP_000420452.1 | protein-serine/threonine phosphatase | - |
| LT987_RS05210 (1062756) | 1062756..1062973 | + | 218 | Protein_1024 | IS5 family transposase ISEcl3 | Transposase |
| LT987_RS05215 (1063046) | 1063046..1063573 | - | 528 | WP_023227563.1 | GNAT family N-acetyltransferase | Toxin Detail |
| LT987_RS05220 (1063570) | 1063570..1063860 | - | 291 | WP_072162154.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| LT987_RS05225 (1064130) | 1064130..1064308 | - | 179 | Protein_1027 | IS3 family transposase | - |
| LT987_RS05230 (1064549) | 1064549..1064875 | + | 327 | WP_000393302.1 | hypothetical protein | - |
| LT987_RS05235 (1065148) | 1065148..1065495 | - | 348 | WP_001669174.1 | DUF1493 family protein | - |
| LT987_RS05240 (1065480) | 1065480..1065929 | - | 450 | WP_000381610.1 | membrane protein | - |
| LT987_RS05245 (1066360) | 1066360..1066803 | - | 444 | WP_000715096.1 | hypothetical protein | VF |
| LT987_RS05250 (1067259) | 1067259..1067909 | + | 651 | WP_001674874.1 | Invasion protein InvF | VF |
| LT987_RS05255 (1067906) | 1067906..1069594 | + | 1689 | WP_232389675.1 | Protein InvG | VF |
| LT987_RS05260 (1069591) | 1069591..1070709 | + | 1119 | WP_000612171.1 | Protein MxiC | VF |
| LT987_RS05265 (1070734) | 1070734..1072791 | + | 2058 | WP_232389676.1 | Invasion protein InvA | VF |
| LT987_RS05270 (1072815) | 1072815..1073222 | + | 408 | WP_001164066.1 | Surface presentation of antigens protein SpaK | VF |
| LT987_RS05275 (1073219) | 1073219..1074514 | + | 1296 | WP_000856766.1 | SctN family type III secretion system ATPase InvC | - |
| LT987_RS05280 (1074492) | 1074492..1074935 | + | 444 | WP_000555884.1 | SPI-1 type III secretion system protein SpaM | - |
| LT987_RS05285 (1074935) | 1074935..1075945 | + | 1011 | WP_001619772.1 | SPI-1 type III secretion system protein SpaN | - |
| LT987_RS05290 (1075945) | 1075945..1076856 | + | 912 | WP_000058736.1 | SPI-1 type III secretion system protein SpaO | - |
| LT987_RS05295 (1076846) | 1076846..1077520 | + | 675 | WP_000526016.1 | SPI-1 type III secretion system export apparatus protein SpaP | - |
| LT987_RS05300 (1077546) | 1077546..1077806 | + | 261 | WP_000342503.1 | SPI-1 type III secretion system export apparatus protein SpaQ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA10052 | UFRD01000002 | 4599654..4610080 | 0.006 |