MGE detailed information
MGE type: Conjugative plasmid MGE length: 85891 bp
Accession: NZ_CP089137 Location: 1..85891 Organism: Escherichia coli strain XD35 Replicon: plasmid pXD35004
Accession: NZ_CP089137 Location: 1..85891 Organism: Escherichia coli strain XD35 Replicon: plasmid pXD35004
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K0768_RS02555 (1) | 1..858 | + | 858 | WP_032495102.1 | incFII family plasmid replication initiator RepA | - |
| K0768_RS02560 (1797) | 1797..2066 | + | 270 | WP_130071642.1 | histidine phosphatase family protein | - |
| K0768_RS02565 (2099) | 2099..5065 | - | 2967 | WP_001138014.1 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| K0768_RS02570 (5069) | 5069..5629 | - | 561 | WP_001161490.1 | Tn3 family transposase TnpR_TnAs1 | Transposase |
| K0768_RS02575 (5939) | 5939..6487 | + | 549 | Protein_4 | PAS domain-containing protein | - |
| K0768_RS02580 (6530) | 6530..7234 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| K0768_RS02585 (7470) | 7470..8027 | + | 558 | WP_086353234.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| K0768_RS02590 (8065) | 8065..9585 | + | 1521 | WP_086353235.1 | hypothetical protein | - |
| K0768_RS02595 (9822) | 9822..10196 | + | 375 | Protein_8 | protein-disulfide reductase DsbD family protein | - |
| K0768_RS02600 (10296) | 10296..10853 | + | 558 | Protein_9 | twin-arginine translocation (TAT) pathway signal sequence domain protein | - |
| K0768_RS02605 (10864) | 10864..11502 | - | 639 | WP_004201168.1 | phosphoribosylanthranilate isomerase | - |
| K0768_RS02610 (11507) | 11507..11872 | - | 366 | WP_004201167.1 | bleomycin binding protein Ble-MBL | - |
| K0768_RS02615 (11876) | 11876..12688 | - | 813 | WP_004201164.1 | Metallo-beta-lactamase type 2 | ARG |
| K0768_RS02620 (12789) | 12789..13757 | - | 969 | WP_005804963.1 | IS30 family transposase ISAba125 | Transposase |
| K0768_RS02625 (13966) | 13966..14745 | - | 780 | WP_014386410.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| K0768_RS02635 (16091) | 16091..16528 | + | 438 | WP_017480454.1 | hypothetical protein | - |
| K0768_RS02640 (16590) | 16590..16949 | - | 360 | WP_232044468.1 | hypothetical protein | - |
| K0768_RS02645 (17008) | 17008..17712 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| K0768_RS02650 (17778) | 17778..18323 | + | 546 | Protein_19 | Tn3 family transposase TnpA_Tn3 | Transposase |
| K0768_RS02655 (18359) | 18359..18774 | - | 416 | Protein_20 | IS1 family transposase IS1R | Transposase |
| K0768_RS02660 (19023) | 19023..19424 | - | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| K0768_RS02665 (19357) | 19357..19614 | - | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| K0768_RS02670 (19707) | 19707..20039 | - | 333 | WP_072134990.1 | CPBP family intramembrane metalloprotease | - |
| K0768_RS02675 (20286) | 20286..21287 | - | 1002 | WP_139003267.1 | Methyl-accepting chemotaxis protein McpQ | VF |
| K0768_RS02680 (21396) | 21396..22100 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| K0768_RS02685 (22151) | 22151..22768 | - | 618 | Protein_26 | IS91 family transposase ISSbo1 | Transposase |
| K0768_RS02690 (22778) | 22778..22966 | - | 189 | WP_000957857.1 | hypothetical protein | - |
| K0768_RS02695 (23058) | 23058..23594 | + | 537 | WP_064441864.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| K0768_RS02700 (23777) | 23777..24637 | + | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| K0768_RS02705 (24807) | 24807..25562 | + | 756 | WP_012372818.1 | 16S rRNA (guanine(1405)-N(7))-methyltransferase | ARG |
| K0768_RS02710 (25643) | 25643..25957 | - | 315 | Protein_31 | hypothetical protein | - |
| K0768_RS02715 (26012) | 26012..26716 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| K0768_RS02720 (26782) | 26782..26847 | + | 66 | Protein_33 | IS1 family transposase | - |
| K0768_RS02725 (28296) | 28296..28530 | + | 235 | Protein_34 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| K0768_RS02730 (28658) | 28658..28861 | + | 204 | Protein_35 | hypothetical protein | - |
| K0768_RS02735 (29062) | 29062..29412 | - | 351 | WP_000361389.1 | plasmid partitioning/stability family protein | - |
| K0768_RS02740 (29415) | 29415..30377 | - | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| K0768_RS02745 (30524) | 30524..30817 | + | 294 | WP_032146011.1 | hypothetical protein | - |
| K0768_RS02750 (30894) | 30894..31577 | + | 684 | WP_000085883.1 | DNA methylase | - |
| K0768_RS02755 (31578) | 31578..31799 | + | 222 | WP_001104881.1 | hypothetical protein | - |
| K0768_RS02760 (31813) | 31813..32247 | + | 435 | WP_000274503.1 | DUF1380 family protein | - |
| K0768_RS02765 (32298) | 32298..33074 | + | 777 | WP_001383963.1 | hypothetical protein | - |
| K0768_RS02770 (33492) | 33492..33917 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| K0768_RS02775 (33964) | 33964..34386 | + | 423 | WP_000271762.1 | DUF1380 family protein | - |
| K0768_RS02780 (34383) | 34383..34574 | + | 192 | WP_001027493.1 | hypothetical protein | - |
| K0768_RS02785 (34888) | 34888..36555 | - | 1668 | WP_012372796.1 | group II intron reverse transcriptase/maturase | - |
| K0768_RS02790 (37284) | 37284..37438 | - | 155 | Protein_47 | hypothetical protein | - |
| K0768_RS02795 (37955) | 37955..38185 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| K0768_RS02800 (38237) | 38237..39598 | + | 1362 | WP_000170695.1 | DUF3560 domain-containing protein | - |
| K0768_RS02805 (39645) | 39645..40208 | + | 564 | WP_015059007.1 | class I SAM-dependent methyltransferase | - |
| K0768_RS02810 (40294) | 40294..40749 | - | 456 | Protein_51 | hypothetical protein | - |
| K0768_RS02815 (41051) | 41051..41578 | + | 528 | WP_000290834.1 | single-stranded DNA-binding protein | - |
| K0768_RS02820 (41636) | 41636..41869 | + | 234 | WP_000006003.1 | DUF905 family protein | - |
| K0768_RS02825 (41930) | 41930..43953 | + | 2024 | Protein_54 | ParB/RepB/Spo0J family partition protein | - |
| K0768_RS02830 (44022) | 44022..44456 | + | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| K0768_RS02835 (44453) | 44453..45215 | + | 763 | Protein_56 | plasmid SOS inhibition protein A | - |
| K0768_RS02840 (45193) | 45193..45372 | - | 180 | WP_001309233.1 | hypothetical protein | - |
| - (45184) | 45184..45408 | + | 225 | NuclAT_0 | - | - |
| - (45184) | 45184..45408 | + | 225 | NuclAT_0 | - | - |
| - (45184) | 45184..45408 | + | 225 | NuclAT_0 | - | - |
| - (45184) | 45184..45408 | + | 225 | NuclAT_0 | - | - |
| K0768_RS02845 (45394) | 45394..45543 | + | 150 | Protein_58 | plasmid maintenance protein Mok | - |
| K0768_RS02850 (45485) | 45485..45610 | + | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| K0768_RS02855 (45929) | 45929..46225 | - | 297 | Protein_60 | hypothetical protein | - |
| K0768_RS02860 (46525) | 46525..46821 | + | 297 | WP_001272251.1 | hypothetical protein | - |
| K0768_RS02865 (46932) | 46932..47753 | + | 822 | WP_001234445.1 | DUF932 domain-containing protein | - |
| K0768_RS02870 (48050) | 48050..48697 | - | 648 | WP_015059008.1 | hypothetical protein | VF |
| K0768_RS02875 (48974) | 48974..49357 | + | 384 | WP_000124981.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| K0768_RS02880 (49548) | 49548..50234 | + | 687 | WP_015059009.1 | PAS domain-containing protein | - |
| K0768_RS02885 (50328) | 50328..50555 | + | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| K0768_RS02890 (50589) | 50589..50954 | + | 366 | WP_021519752.1 | type IV conjugative transfer system pilin TraA | - |
| K0768_RS02895 (50969) | 50969..51280 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| K0768_RS02900 (51302) | 51302..51868 | + | 567 | WP_000399794.1 | type IV conjugative transfer system protein TraE | - |
| K0768_RS02905 (51855) | 51855..52583 | + | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| K0768_RS02910 (52583) | 52583..54010 | + | 1428 | WP_032297072.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| K0768_RS02915 (54000) | 54000..54590 | + | 591 | WP_000002778.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| K0768_RS02920 (54577) | 54577..54774 | + | 198 | WP_001324648.1 | conjugal transfer protein TrbD | - |
| K0768_RS02925 (54786) | 54786..55037 | + | 252 | WP_001038341.1 | conjugal transfer protein TrbG | - |
| K0768_RS02930 (55034) | 55034..55549 | + | 516 | WP_000809902.1 | type IV conjugative transfer system lipoprotein TraV | - |
| K0768_RS02935 (55684) | 55684..55905 | + | 222 | WP_001278692.1 | conjugal transfer protein TraR | - |
| K0768_RS02940 (56065) | 56065..58692 | + | 2628 | WP_015059012.1 | type IV secretion system protein TraC | - |
| K0768_RS02945 (58689) | 58689..59075 | + | 387 | WP_015059013.1 | type-F conjugative transfer system protein TrbI | - |
| K0768_RS02950 (59072) | 59072..59704 | + | 633 | WP_001203735.1 | type-F conjugative transfer system protein TraW | - |
| K0768_RS02955 (59701) | 59701..60693 | + | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| K0768_RS02960 (60720) | 60720..61028 | + | 309 | WP_000412447.1 | hypothetical protein | - |
| K0768_RS02965 (61091) | 61091..61612 | + | 522 | WP_015059014.1 | hypothetical protein | - |
| K0768_RS02970 (61639) | 61639..62277 | + | 639 | WP_000087532.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| K0768_RS02975 (62274) | 62274..62645 | + | 372 | WP_000056336.1 | hypothetical protein | - |
| K0768_RS02980 (62671) | 62671..63093 | + | 423 | WP_001229309.1 | HNH endonuclease signature motif containing protein | - |
| K0768_RS02985 (63090) | 63090..64940 | + | 1851 | WP_015059015.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| K0768_RS02990 (64967) | 64967..65227 | + | 261 | WP_001712358.1 | conjugal transfer protein TrbE | - |
| K0768_RS02995 (65220) | 65220..65963 | + | 744 | WP_039002205.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| K0768_RS03000 (66124) | 66124..66360 | + | 237 | WP_054377141.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| K0768_RS03005 (66347) | 66347..66892 | + | 546 | WP_000052614.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| K0768_RS03010 (66882) | 66882..67196 | + | 315 | WP_001384255.1 | P-type conjugative transfer protein TrbJ | - |
| K0768_RS03015 (67150) | 67150..67542 | + | 393 | WP_000126338.1 | F-type conjugal transfer protein TrbF | - |
| K0768_RS03020 (67529) | 67529..68902 | + | 1374 | WP_000944325.1 | conjugal transfer pilus assembly protein TraH | - |
| K0768_RS03025 (68899) | 68899..71715 | + | 2817 | WP_015059018.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| K0768_RS03030 (71748) | 71748..72269 | + | 522 | WP_000632668.1 | conjugal transfer entry exclusion protein TraS | - |
| K0768_RS03035 (72294) | 72294..73025 | + | 732 | WP_021559024.1 | conjugal transfer complement resistance protein TraT | - |
| K0768_RS03040 (73228) | 73228..73965 | + | 738 | WP_015059020.1 | hypothetical protein | - |
| K0768_RS03045 (74016) | 74016..76232 | + | 2217 | WP_059274178.1 | type IV conjugative transfer system coupling protein TraD | - |
| K0768_RS03050 (76232) | 76232..81502 | + | 5271 | WP_015059021.1 | Multifunctional conjugation protein TraI | Relaxase |
| K0768_RS03055 (81522) | 81522..82268 | + | 747 | WP_000205770.1 | conjugal transfer pilus acetylase TraX | - |
| K0768_RS03060 (82323) | 82323..82883 | + | 561 | WP_000139328.1 | fertility inhibition protein FinO | - |
| K0768_RS03065 (83015) | 83015..83215 | + | 201 | WP_015059022.1 | hypothetical protein | - |
| K0768_RS03070 (83601) | 83601..84200 | + | 600 | WP_032083981.1 | PIN domain-containing protein | - |
| K0768_RS03075 (84262) | 84262..84594 | + | 333 | WP_152916585.1 | hypothetical protein | - |
| - (84795) | 84795..84854 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - (84795) | 84795..84854 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - (84795) | 84795..84854 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - (84795) | 84795..84854 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| K0768_RS03080 (84899) | 84899..85048 | + | 150 | WP_001312851.1 | Hok/Gef family protein | Toxin Detail |
| K0768_RS03085 (85332) | 85332..85580 | + | 249 | WP_000083837.1 | replication regulatory protein RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|