MGE detailed information
MGE type: Conjugative plasmid MGE length: 125931 bp
Accession: NZ_CP088139 Location: 1..125931 Organism: Salmonella enterica subsp. enterica serovar Hissar strain SCPM-O-B-4549 Replicon: plasmid pB-4549_1
Accession: NZ_CP088139 Location: 1..125931 Organism: Salmonella enterica subsp. enterica serovar Hissar strain SCPM-O-B-4549 Replicon: plasmid pB-4549_1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LRM92_RS23905 (LRM92_23900) | 1643..2320 | + | 678 | WP_001339397.1 | IS66 family transposase ISCro1 | Transposase |
| LRM92_RS23910 (LRM92_23905) | 2320..2667 | + | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| LRM92_RS23915 (LRM92_23910) | 2687..4258 | + | 1572 | WP_032280090.1 | IS66 family transposase ISCro1 | Transposase |
| LRM92_RS23920 (LRM92_23915) | 4610..5167 | - | 558 | WP_000725062.1 | Attachment invasion locus protein | VF |
| LRM92_RS23925 (LRM92_23920) | 5257..6156 | - | 900 | WP_010999938.1 | YjiK family protein | - |
| LRM92_RS23930 (LRM92_23925) | 6153..6299 | - | 147 | WP_001192557.1 | hypothetical protein | - |
| LRM92_RS23935 (LRM92_23930) | 6289..6942 | - | 654 | WP_000178592.1 | DsbA family protein | - |
| LRM92_RS23940 (LRM92_23935) | 7187..7537 | - | 351 | WP_001526811.1 | Transcriptional regulatory protein RcsB | VF |
| LRM92_RS23945 (LRM92_23940) | 7522..7734 | - | 213 | WP_000004313.1 | hypothetical protein | VF |
| LRM92_RS23950 (LRM92_23945) | 8166..9041 | - | 876 | WP_014343944.1 | hypothetical protein | - |
| LRM92_RS23955 (LRM92_23950) | 9294..9851 | - | 558 | WP_010999940.1 | membrane protein | - |
| LRM92_RS23960 (LRM92_23955) | 9866..10558 | - | 693 | WP_001038510.1 | Chaperone protein FaeE | VF |
| LRM92_RS23965 (LRM92_23960) | 10551..12959 | - | 2409 | WP_000007893.1 | Outer membrane usher protein FimD | VF |
| LRM92_RS23970 (LRM92_23965) | 13187..13705 | - | 519 | WP_000748205.1 | hypothetical protein | VF |
| LRM92_RS23975 (LRM92_23970) | 13980..14282 | - | 303 | WP_000979451.1 | Major pilu subunit operon regulatory protein PapB | VF |
| LRM92_RS23980 (LRM92_23975) | 15001..15382 | + | 382 | Protein_16 | YgiW/YdeI family stress tolerance OB fold protein | - |
| LRM92_RS23985 (LRM92_23980) | 15551..15995 | + | 445 | Protein_17 | tyrosine-type recombinase/integrase | - |
| LRM92_RS23990 (LRM92_23985) | 16254..16427 | - | 174 | Protein_18 | protein RepA | - |
| LRM92_RS23995 (LRM92_23990) | 16461..19427 | - | 2967 | WP_001138064.1 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| LRM92_RS24000 (LRM92_23995) | 19430..19990 | - | 561 | WP_000147567.1 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| LRM92_RS24005 (LRM92_24000) | 20116..20466 | - | 351 | WP_000454193.1 | DUF3330 domain-containing protein | - |
| LRM92_RS24010 (LRM92_24005) | 20669..21682 | - | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| LRM92_RS24015 (LRM92_24010) | 21831..22364 | + | 534 | WP_000381802.1 | 2''-aminoglycoside nucleotidyltransferase | ARG |
| LRM92_RS24020 (LRM92_24015) | 22521..22868 | + | 348 | WP_000679427.1 | quaternary ammonium compound efflux SMR transporter QacE delta 1 | - |
| LRM92_RS24025 (LRM92_24020) | 22862..23701 | + | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| LRM92_RS24030 (LRM92_24025) | 24106..25647 | + | 1542 | WP_000050481.1 | IS91 family transposase ISVsa3 | Transposase |
| LRM92_RS24035 (LRM92_24030) | 25769..26386 | - | 618 | WP_000256638.1 | ATP-dependent Clp protease proteolytic subunit | - |
| LRM92_RS24040 (LRM92_24035) | 26412..26858 | - | 447 | WP_001274976.1 | hypothetical protein | - |
| LRM92_RS24045 (LRM92_24040) | 26839..27399 | - | 561 | WP_001143450.1 | Dihydrofolate reductase | ARG |
| LRM92_RS24050 (LRM92_24045) | 27399..28013 | - | 615 | WP_000019884.1 | hypothetical protein | - |
| LRM92_RS24055 (LRM92_24050) | 28238..31210 | - | 2973 | WP_001138073.1 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| LRM92_RS24060 (LRM92_24055) | 31213..31770 | - | 558 | WP_001162012.1 | Tn3 family transposase TnpR_TnAs2 | Transposase |
| LRM92_RS24065 (LRM92_24060) | 32067..33080 | - | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| LRM92_RS24070 (LRM92_24065) | 33290..34120 | + | 831 | WP_001334766.1 | Beta-lactamase OXA-1 | ARG |
| LRM92_RS24075 (LRM92_24070) | 34233..35071 | + | 839 | Protein_35 | ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1 | - |
| LRM92_RS24080 (LRM92_24075) | 35188..35535 | + | 348 | WP_000679427.1 | quaternary ammonium compound efflux SMR transporter QacE delta 1 | - |
| LRM92_RS24085 (LRM92_24080) | 35529..36368 | + | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| LRM92_RS24090 (LRM92_24085) | 36496..36996 | + | 501 | WP_000376623.1 | GNAT family N-acetyltransferase | - |
| LRM92_RS24095 (LRM92_24090) | 37172..37957 | - | 786 | WP_000983249.1 | IS21 family transposase IS1326 | Transposase |
| LRM92_RS24100 (LRM92_24095) | 37944..39467 | - | 1524 | WP_001324342.1 | IS21 family transposase IS1326 | Transposase |
| LRM92_RS24105 (LRM92_24100) | 39569..40429 | - | 861 | WP_000344784.1 | TniB family NTP-binding protein | - |
| LRM92_RS24110 (LRM92_24105) | 40432..42111 | - | 1680 | WP_000179844.1 | DDE-type integrase/transposase/recombinase | - |
| LRM92_RS24115 (LRM92_24110) | 42186..42854 | - | 669 | WP_001300294.1 | putative signaling protein | VF |
| LRM92_RS24120 (LRM92_24115) | 42890..43126 | - | 237 | WP_000993386.1 | broad-spectrum mercury transporter MerE | - |
| LRM92_RS24125 (LRM92_24120) | 43123..43485 | - | 363 | WP_001277456.1 | mercury resistance co-regulator MerD | - |
| LRM92_RS24130 (LRM92_24125) | 43503..45197 | - | 1695 | WP_000105636.1 | mercury(II) reductase | - |
| LRM92_RS24135 (LRM92_24130) | 45249..45671 | - | 423 | WP_001340589.1 | organomercurial transporter MerC | - |
| LRM92_RS24140 (LRM92_24135) | 45707..45982 | - | 276 | WP_000732292.1 | mercury resistance system periplasmic binding protein MerP | - |
| LRM92_RS24145 (LRM92_24140) | 45996..46346 | - | 351 | WP_001294663.1 | mercuric transport protein MerT | - |
| LRM92_RS24150 (LRM92_24145) | 46418..46852 | + | 435 | WP_000429836.1 | IS607 family transposase ISChh1 | Transposase |
| LRM92_RS24155 (LRM92_24150) | 46885..47706 | - | 822 | Protein_51 | RepB family plasmid replication initiator protein | - |
| LRM92_RS24160 (LRM92_24155) | 48200..48496 | - | 297 | WP_001687482.1 | hypothetical protein | - |
| LRM92_RS24165 (LRM92_24160) | 48508..48936 | + | 429 | Protein_53 | hypothetical protein | - |
| LRM92_RS24170 (LRM92_24165) | 48980..49501 | - | 522 | WP_010999942.1 | hypothetical protein | - |
| LRM92_RS24175 (LRM92_24170) | 50177..50395 | + | 219 | WP_156038185.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| LRM92_RS24180 (LRM92_24175) | 50397..50702 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| LRM92_RS24185 (LRM92_24180) | 50704..50994 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| LRM92_RS24190 (LRM92_24185) | 50991..51512 | + | 522 | WP_000198608.1 | hypothetical protein | - |
| LRM92_RS24195 (LRM92_24190) | 51547..52329 | + | 783 | WP_000082169.1 | site-specific integrase | - |
| LRM92_RS24200 (LRM92_24195) | 52338..52889 | + | 552 | WP_000545754.1 | Cyclic di-GMP phosphodiesterase PdeL | VF |
| LRM92_RS24205 (LRM92_24200) | 53076..53564 | + | 489 | WP_001075507.1 | CaiF/GrlA family transcriptional regulator | - |
| LRM92_RS24210 (LRM92_24205) | 53558..54043 | + | 486 | WP_000905606.1 | membrane protein | - |
| LRM92_RS24215 (LRM92_24210) | 54320..54607 | - | 288 | WP_071530243.1 | hypothetical protein | - |
| LRM92_RS24220 (LRM92_24215) | 54763..55323 | + | 561 | WP_000900095.1 | Invasin | VF |
| LRM92_RS24225 (LRM92_24220) | 55390..55740 | - | 351 | WP_001541541.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| LRM92_RS24230 (LRM92_24225) | 55797..56221 | + | 425 | Protein_66 | IS200-IS605 family transposase ISEc46 | Transposase |
| LRM92_RS24235 (LRM92_24230) | 56348..56998 | - | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| LRM92_RS24240 (LRM92_24235) | 57259..57984 | - | 726 | WP_001122242.1 | MAPK phosphothreonine lyase | VF |
| LRM92_RS24245 (LRM92_24240) | 58265..60040 | - | 1776 | WP_001676648.1 | Mono(ADP-ribosyl)transferase SpvB | VF |
| LRM92_RS24250 (LRM92_24245) | 60092..60259 | - | 168 | WP_001526987.1 | hypothetical protein | - |
| LRM92_RS24255 (LRM92_24250) | 60222..60989 | - | 768 | WP_001526990.1 | virulence protein SpvA | - |
| LRM92_RS24260 (LRM92_24255) | 61163..61327 | - | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| LRM92_RS24265 (LRM92_24260) | 61501..62394 | - | 894 | WP_000346691.1 | virulence genes transcriptional activator SpvR | - |
| LRM92_RS24270 (LRM92_24265) | 63003..64040 | + | 1038 | WP_001121399.1 | IS630 family transposase ISEc33 | Transposase |
| LRM92_RS24275 (LRM92_24270) | 64229..65254 | - | 1026 | WP_001576625.1 | ExeA family protein | - |
| LRM92_RS24280 (LRM92_24275) | 65187..66851 | - | 1665 | WP_000098783.1 | IS481 family transposase ISAzs36 | Transposase |
| LRM92_RS24285 (LRM92_24280) | 66835..67395 | - | 561 | WP_001240331.1 | Tn3 family transposase ISPsy42 | Transposase |
| LRM92_RS24290 (LRM92_24285) | 67602..68342 | - | 741 | WP_001541566.1 | carbonic anhydrase family protein | - |
| LRM92_RS24295 (LRM92_24290) | 68997..69485 | - | 489 | WP_001135407.1 | hypothetical protein | - |
| LRM92_RS24300 (LRM92_24295) | 69744..70859 | + | 1116 | WP_001247118.1 | DNA-binding protein | - |
| LRM92_RS24305 (LRM92_24300) | 70945..71361 | + | 417 | WP_001541564.1 | hypothetical protein | - |
| LRM92_RS24310 (LRM92_24305) | 71464..71880 | + | 417 | WP_000988946.1 | hypothetical protein | - |
| LRM92_RS24315 (LRM92_24310) | 71937..72538 | + | 602 | Protein_83 | DUF2913 family protein | - |
| LRM92_RS24320 (LRM92_24315) | 72535..73476 | - | 942 | WP_000728917.1 | Recombination-promoting nuclease RpnA | VF |
| LRM92_RS24325 (LRM92_24320) | 73891..75096 | + | 1206 | WP_000427676.1 | AAA family ATPase | - |
| LRM92_RS24330 (LRM92_24325) | 75096..76070 | + | 975 | WP_000064274.1 | ParB family protein | - |
| LRM92_RS24335 (LRM92_24330) | 76152..77426 | - | 1275 | WP_000457541.1 | Y-family DNA polymerase | - |
| LRM92_RS24340 (LRM92_24335) | 77426..77848 | - | 423 | WP_000925627.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| LRM92_RS24345 (LRM92_24340) | 78359..78829 | + | 471 | WP_000490265.1 | hypothetical protein | - |
| LRM92_RS24350 (LRM92_24345) | 78822..79178 | + | 357 | WP_000369839.1 | hypothetical protein | - |
| LRM92_RS24355 (LRM92_24350) | 79116..79397 | - | 282 | WP_146671468.1 | hypothetical protein | - |
| LRM92_RS24360 (LRM92_24355) | 79560..80240 | + | 681 | WP_000088645.1 | DNA methylase | - |
| LRM92_RS24365 (LRM92_24360) | 80240..80461 | + | 222 | WP_001109588.1 | hypothetical protein | - |
| LRM92_RS24370 (LRM92_24365) | 80517..80930 | + | 414 | WP_000990114.1 | DUF1380 family protein | - |
| LRM92_RS24375 (LRM92_24370) | 81002..81766 | + | 765 | WP_001246548.1 | membrane protein | - |
| LRM92_RS24380 (LRM92_24375) | 82262..82696 | + | 435 | WP_001200150.1 | antirestriction protein | - |
| LRM92_RS24385 (LRM92_24380) | 82763..83197 | + | 435 | WP_000274533.1 | DUF1380 family protein | - |
| LRM92_RS24390 (LRM92_24385) | 83433..83756 | + | 324 | WP_000015983.1 | DNA polymerase III subunit theta | - |
| LRM92_RS24395 (LRM92_24390) | 83720..83875 | + | 156 | WP_001526868.1 | hypothetical protein | - |
| LRM92_RS24400 (LRM92_24395) | 84469..84987 | + | 519 | WP_000741240.1 | single-stranded DNA-binding protein SSB2 | - |
| LRM92_RS24405 (LRM92_24400) | 85042..85284 | + | 243 | WP_000131520.1 | DUF905 domain-containing protein | - |
| LRM92_RS24410 (LRM92_24405) | 85353..87350 | + | 1998 | WP_000117513.1 | ParB/RepB/Spo0J family partition protein | - |
| LRM92_RS24415 (LRM92_24410) | 87390..87824 | + | 435 | WP_010999943.1 | conjugation system SOS inhibitor PsiB | - |
| LRM92_RS24420 (LRM92_24415) | 87821..88558 | + | 738 | WP_000581933.1 | plasmid SOS inhibition protein A | - |
| LRM92_RS24780 | 88593..88721 | + | 129 | WP_000372429.1 | hypothetical protein | - |
| LRM92_RS24425 (LRM92_24420) | 88807..88965 | + | 159 | WP_001704449.1 | hypothetical protein | - |
| LRM92_RS24430 (LRM92_24425) | 89068..89886 | + | 819 | Protein_107 | DUF932 domain-containing protein | - |
| LRM92_RS24435 (LRM92_24430) | 90197..90667 | - | 471 | WP_001526856.1 | hypothetical protein | VF |
| LRM92_RS24440 (LRM92_24435) | 91082..91462 | + | 381 | WP_001151546.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| LRM92_RS24445 (LRM92_24440) | 91655..92341 | + | 687 | WP_156038189.1 | PAS domain-containing protein | - |
| LRM92_RS24450 (LRM92_24445) | 92435..92662 | + | 228 | WP_001676655.1 | conjugal transfer relaxosome protein TraY | - |
| LRM92_RS24455 (LRM92_24450) | 92704..93066 | + | 363 | WP_001274201.1 | type IV conjugative transfer system pilin TraA | - |
| LRM92_RS24460 (LRM92_24455) | 93081..93392 | + | 312 | WP_012825259.1 | type IV conjugative transfer system protein TraL | - |
| LRM92_RS24465 (LRM92_24460) | 93414..93980 | + | 567 | WP_000399768.1 | type IV conjugative transfer system protein TraE | - |
| LRM92_RS24470 (LRM92_24465) | 93967..94707 | + | 741 | WP_001230719.1 | type-F conjugative transfer system secretin TraK | - |
| LRM92_RS24475 (LRM92_24470) | 94707..96128 | + | 1422 | WP_000146700.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| LRM92_RS24480 (LRM92_24475) | 96118..96714 | + | 597 | WP_000527896.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| LRM92_RS24485 (LRM92_24480) | 96692..96937 | + | 246 | WP_010999944.1 | DUF2689 domain-containing protein | - |
| LRM92_RS24490 (LRM92_24485) | 96934..97449 | + | 516 | WP_001079995.1 | type IV conjugative transfer system lipoprotein TraV | - |
| LRM92_RS24495 (LRM92_24490) | 97584..97805 | + | 222 | WP_001278699.1 | conjugal transfer protein TraR | - |
| LRM92_RS24500 (LRM92_24495) | 97798..98265 | + | 468 | WP_000549562.1 | hypothetical protein | - |
| LRM92_RS24505 (LRM92_24500) | 98382..98645 | + | 264 | WP_001239255.1 | hypothetical protein | - |
| LRM92_RS24510 (LRM92_24505) | 98661..101309 | + | 2649 | WP_156038187.1 | type IV secretion system protein TraC | - |
| LRM92_RS24515 (LRM92_24510) | 101284..101670 | + | 387 | WP_000105164.1 | type-F conjugative transfer system protein TrbI | - |
| LRM92_RS24520 (LRM92_24515) | 101667..102299 | + | 633 | WP_000871995.1 | type-F conjugative transfer system protein TraW | - |
| LRM92_RS24525 (LRM92_24520) | 102296..103288 | + | 993 | WP_000833320.1 | conjugal transfer pilus assembly protein TraU | - |
| LRM92_RS24530 (LRM92_24525) | 103307..103615 | + | 309 | WP_010999945.1 | hypothetical protein | - |
| LRM92_RS24535 (LRM92_24530) | 103600..104238 | + | 639 | WP_000554823.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| LRM92_RS24540 (LRM92_24535) | 104275..104694 | + | 420 | WP_001229397.1 | HNH endonuclease signature motif containing protein | - |
| LRM92_RS24545 (LRM92_24540) | 104691..106517 | + | 1827 | WP_000827528.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| LRM92_RS24550 (LRM92_24545) | 106528..106743 | + | 216 | WP_000700023.1 | conjugal transfer protein TrbE | - |
| LRM92_RS24555 (LRM92_24550) | 106755..107504 | + | 750 | WP_001226854.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| LRM92_RS24560 (LRM92_24555) | 107718..108011 | + | 294 | WP_001233881.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| LRM92_RS24565 (LRM92_24560) | 107998..108546 | + | 549 | WP_000055840.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| LRM92_RS24570 (LRM92_24565) | 108536..109918 | + | 1383 | WP_001161719.1 | conjugal transfer pilus assembly protein TraH | - |
| LRM92_RS24575 (LRM92_24570) | 109915..112737 | + | 2823 | WP_001007086.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| LRM92_RS24580 (LRM92_24575) | 112753..113247 | + | 495 | WP_010999946.1 | entry exclusion protein | - |
| LRM92_RS24585 (LRM92_24580) | 113283..114014 | + | 732 | WP_000782438.1 | conjugal transfer complement resistance protein TraT | - |
| LRM92_RS24590 (LRM92_24585) | 114391..116553 | + | 2163 | WP_000009318.1 | type IV conjugative transfer system coupling protein TraD | - |
| LRM92_RS24595 (LRM92_24590) | 116562..116960 | - | 399 | WP_000911322.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LRM92_RS24600 (LRM92_24595) | 116960..117187 | - | 228 | WP_000450265.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| LRM92_RS24605 (LRM92_24600) | 117269..122527 | + | 5259 | WP_000986921.1 | Multifunctional conjugation protein TraI | Relaxase |
| LRM92_RS24610 (LRM92_24605) | 122547..123287 | + | 741 | WP_000177629.1 | conjugal transfer pilus acetylase TraX | - |
| LRM92_RS24615 (LRM92_24610) | 123342..123905 | + | 564 | WP_000139307.1 | fertility inhibition protein FinO | - |
| LRM92_RS24620 (LRM92_24615) | 124020..124304 | + | 285 | WP_000477658.1 | hypothetical protein | - |
| LRM92_RS24625 (LRM92_24620) | 124317..124472 | + | 156 | WP_000983042.1 | hypothetical protein | - |
| LRM92_RS24630 (LRM92_24625) | 124582..125148 | + | 567 | Protein_147 | phospholipase D family protein | - |
| LRM92_RS24635 (LRM92_24630) | 125259..125525 | + | 267 | WP_010999936.1 | replication regulatory protein RepA | - |
| LRM92_RS24640 (LRM92_24635) | 125775..125852 | + | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|