MGE detailed information
MGE type: Conjugative plasmid MGE length: 86811 bp
Accession: NZ_CP088137 Location: 1..86811 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain SCPM-O-B-4515 Replicon: plasmid pB-4515_1
Accession: NZ_CP088137 Location: 1..86811 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain SCPM-O-B-4515 Replicon: plasmid pB-4515_1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LRM91_RS22465 (LRM91_22465) | 1578..1982 | - | 405 | Protein_1 | IS66 family transposase zinc-finger binding domain-containing protein | - |
| LRM91_RS22470 (LRM91_22470) | 1974..2188 | - | 215 | Protein_2 | IS66 family transposase ISEc8 | Transposase |
| LRM91_RS22475 (LRM91_22475) | 2343..2540 | - | 198 | WP_001675602.1 | transposase | - |
| LRM91_RS22480 (LRM91_22480) | 2707..3438 | - | 732 | WP_001746755.1 | hypothetical protein | - |
| LRM91_RS22485 (LRM91_22485) | 3666..4325 | - | 660 | WP_249895816.1 | fimbrial protein | - |
| LRM91_RS22490 (LRM91_22490) | 5784..6056 | + | 273 | WP_001178538.1 | hypothetical protein | - |
| LRM91_RS22495 (LRM91_22495) | 6292..7089 | + | 798 | WP_000704722.1 | hypothetical protein | VF |
| LRM91_RS22500 (LRM91_22500) | 7117..7881 | + | 765 | WP_249895817.1 | hypothetical protein | VF |
| LRM91_RS22505 (LRM91_22505) | 7868..8143 | + | 276 | WP_001020576.1 | hypothetical protein | - |
| LRM91_RS22510 (LRM91_22510) | 8143..8856 | + | 714 | WP_000801114.1 | hypothetical protein | VF |
| LRM91_RS22515 (LRM91_22515) | 8981..9565 | + | 585 | WP_024134326.1 | hypothetical protein | - |
| LRM91_RS22520 (LRM91_22520) | 9638..9850 | + | 213 | WP_000063791.1 | P fimbrial regulatory protein KS71A | VF |
| LRM91_RS22525 (LRM91_22525) | 10111..10272 | + | 162 | WP_001816720.1 | hypothetical protein | - |
| LRM91_RS22530 (LRM91_22530) | 10298..11146 | + | 849 | WP_249895818.1 | SdiA-regulated domain-containing protein | - |
| LRM91_RS22535 (LRM91_22535) | 11716..12144 | - | 429 | WP_001746752.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LRM91_RS22540 (LRM91_22540) | 12141..12371 | - | 231 | WP_001261283.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| LRM91_RS22545 (LRM91_22545) | 13116..13334 | + | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| LRM91_RS22550 (LRM91_22550) | 13336..13641 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| LRM91_RS22555 (LRM91_22555) | 13643..13933 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| LRM91_RS22560 (LRM91_22560) | 13930..14451 | + | 522 | WP_249895819.1 | cytoplasmic protein | - |
| LRM91_RS22565 (LRM91_22565) | 14486..15268 | + | 783 | WP_249895820.1 | site-specific integrase | - |
| LRM91_RS22570 (LRM91_22570) | 15277..15828 | + | 552 | WP_000545754.1 | Cyclic di-GMP phosphodiesterase PdeL | VF |
| LRM91_RS22575 (LRM91_22575) | 16015..16503 | + | 489 | WP_001075507.1 | CaiF/GrlA family transcriptional regulator | - |
| LRM91_RS22580 (LRM91_22580) | 16497..16982 | + | 486 | WP_000905606.1 | membrane protein | - |
| LRM91_RS22585 (LRM91_22585) | 17259..17546 | - | 288 | WP_071530243.1 | hypothetical protein | - |
| LRM91_RS22590 (LRM91_22590) | 17702..18262 | + | 561 | WP_071785580.1 | Invasin | VF |
| LRM91_RS22595 (LRM91_22595) | 18329..18679 | - | 351 | WP_001746584.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| LRM91_RS22600 (LRM91_22600) | 18736..19165 | + | 430 | Protein_28 | IS200/IS605 family transposase | - |
| LRM91_RS22605 (LRM91_22605) | 19292..19942 | - | 651 | WP_249895821.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| LRM91_RS22610 (LRM91_22610) | 20203..20928 | - | 726 | WP_249895822.1 | MAPK phosphothreonine lyase | VF |
| LRM91_RS22615 (LRM91_22615) | 21209..22984 | - | 1776 | WP_249895823.1 | Mono(ADP-ribosyl)transferase SpvB | VF |
| LRM91_RS22620 (LRM91_22620) | 23036..23203 | - | 168 | WP_001526987.1 | hypothetical protein | - |
| LRM91_RS22625 (LRM91_22625) | 23166..23933 | - | 768 | WP_249895824.1 | virulence protein SpvA | - |
| LRM91_RS22630 (LRM91_22630) | 24107..24271 | - | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| LRM91_RS22635 (LRM91_22635) | 24445..25338 | - | 894 | WP_000346690.1 | virulence genes transcriptional activator SpvR | - |
| LRM91_RS22640 (LRM91_22640) | 25945..26980 | + | 1036 | Protein_36 | IS630 family transposase | - |
| LRM91_RS22645 (LRM91_22645) | 27169..28194 | - | 1026 | WP_249895825.1 | ExeA family protein | - |
| LRM91_RS22650 (LRM91_22650) | 28127..29790 | - | 1664 | Protein_38 | IS481 family transposase ISAzs36 | Transposase |
| LRM91_RS22655 (LRM91_22655) | 29774..30334 | - | 561 | WP_249895826.1 | Tn3 family transposase ISPsy42 | Transposase |
| LRM91_RS22660 (LRM91_22660) | 30541..31281 | - | 741 | WP_249895827.1 | carbonic anhydrase family protein | - |
| LRM91_RS22665 (LRM91_22665) | 31936..32424 | - | 489 | WP_001746759.1 | hypothetical protein | - |
| LRM91_RS22670 (LRM91_22670) | 32683..33798 | + | 1116 | WP_001247118.1 | DNA-binding protein | - |
| LRM91_RS22675 (LRM91_22675) | 33884..34300 | + | 417 | WP_001541564.1 | hypothetical protein | - |
| LRM91_RS22680 (LRM91_22680) | 34403..35218 | + | 816 | WP_249895828.1 | DUF2913 family protein | - |
| LRM91_RS22685 (LRM91_22685) | 35250..36191 | - | 942 | WP_000728917.1 | Recombination-promoting nuclease RpnA | VF |
| LRM91_RS22690 (LRM91_22690) | 36606..37811 | + | 1206 | WP_000427676.1 | AAA family ATPase | - |
| LRM91_RS22695 (LRM91_22695) | 37811..38785 | + | 975 | WP_000064276.1 | ParB family protein | - |
| LRM91_RS22700 (LRM91_22700) | 38867..40141 | - | 1275 | WP_000457541.1 | Y-family DNA polymerase | - |
| LRM91_RS22705 (LRM91_22705) | 40141..40563 | - | 423 | WP_000925627.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| LRM91_RS22710 (LRM91_22710) | 41074..41544 | + | 471 | WP_000490265.1 | hypothetical protein | - |
| LRM91_RS22715 (LRM91_22715) | 41537..41893 | + | 357 | WP_000369839.1 | hypothetical protein | - |
| LRM91_RS22720 (LRM91_22720) | 41831..42112 | - | 282 | WP_146671468.1 | hypothetical protein | - |
| LRM91_RS22725 (LRM91_22725) | 42275..42955 | + | 681 | WP_249895829.1 | DNA methylase | - |
| LRM91_RS22730 (LRM91_22730) | 42955..43176 | + | 222 | WP_001109588.1 | hypothetical protein | - |
| LRM91_RS22735 (LRM91_22735) | 43232..43645 | + | 414 | WP_000990114.1 | DUF1380 family protein | - |
| LRM91_RS22740 (LRM91_22740) | 43717..44481 | + | 765 | WP_001747302.1 | hypothetical protein | - |
| LRM91_RS22745 (LRM91_22745) | 44977..45411 | + | 435 | WP_001200150.1 | antirestriction protein | - |
| LRM91_RS22750 (LRM91_22750) | 45478..45912 | + | 435 | WP_000274534.1 | DUF1380 family protein | - |
| LRM91_RS22755 (LRM91_22755) | 46148..46471 | + | 324 | WP_000015983.1 | DNA polymerase III subunit theta | - |
| LRM91_RS22760 (LRM91_22760) | 46435..46620 | + | 186 | WP_149022797.1 | hypothetical protein | - |
| LRM91_RS22765 (LRM91_22765) | 47214..47732 | + | 519 | WP_000741240.1 | single-stranded DNA-binding protein SSB2 | - |
| LRM91_RS22770 (LRM91_22770) | 47787..48029 | + | 243 | WP_000131519.1 | DUF905 domain-containing protein | - |
| LRM91_RS22775 (LRM91_22775) | 48098..50095 | + | 1998 | WP_249895801.1 | ParB/RepB/Spo0J family partition protein | - |
| LRM91_RS22780 (LRM91_22780) | 50135..50269 | + | 135 | Protein_64 | conjugation system SOS inhibitor PsiB family protein | - |
| LRM91_RS22785 (LRM91_22785) | 50263..50919 | + | 657 | Protein_65 | plasmid SOS inhibition protein A | - |
| LRM91_RS23090 | 50954..51082 | + | 129 | WP_000372430.1 | hypothetical protein | - |
| LRM91_RS22790 (LRM91_22790) | 51168..51326 | + | 159 | WP_001704449.1 | hypothetical protein | - |
| LRM91_RS22795 (LRM91_22795) | 51429..52247 | + | 819 | Protein_68 | DUF932 domain-containing protein | - |
| LRM91_RS22800 (LRM91_22800) | 52558..53028 | - | 471 | WP_024134052.1 | hypothetical protein | VF |
| LRM91_RS22805 (LRM91_22805) | 53451..53831 | + | 381 | WP_249895802.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| LRM91_RS22810 (LRM91_22810) | 54026..54715 | + | 690 | WP_249895803.1 | conjugal transfer transcriptional regulator TraJ | - |
| LRM91_RS22815 (LRM91_22815) | 54808..55209 | + | 402 | WP_032490308.1 | conjugal transfer relaxosome DNA-bindin protein TraY | - |
| LRM91_RS22820 (LRM91_22820) | 55251..55613 | + | 363 | WP_001274202.1 | type IV conjugative transfer system pilin TraA | - |
| LRM91_RS22825 (LRM91_22825) | 55628..55939 | + | 312 | WP_000012129.1 | type IV conjugative transfer system protein TraL | - |
| LRM91_RS22830 (LRM91_22830) | 55961..56527 | + | 567 | WP_000399760.1 | type IV conjugative transfer system protein TraE | - |
| LRM91_RS22835 (LRM91_22835) | 56514..57254 | + | 741 | WP_015059453.1 | type-F conjugative transfer system secretin TraK | - |
| LRM91_RS22840 (LRM91_22840) | 57254..58675 | + | 1422 | WP_000146698.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| LRM91_RS22845 (LRM91_22845) | 58665..59261 | + | 597 | WP_000527898.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| LRM91_RS22850 (LRM91_22850) | 59239..59463 | + | 225 | WP_001746950.1 | DUF2689 domain-containing protein | - |
| LRM91_RS22855 (LRM91_22855) | 59460..59975 | + | 516 | WP_001015676.1 | type IV conjugative transfer system lipoprotein TraV | - |
| LRM91_RS22860 (LRM91_22860) | 60110..60331 | + | 222 | WP_001278699.1 | conjugal transfer protein TraR | - |
| LRM91_RS22865 (LRM91_22865) | 60324..60791 | + | 468 | WP_249895804.1 | hypothetical protein | - |
| LRM91_RS22870 (LRM91_22870) | 60788..61171 | + | 384 | WP_000870325.1 | hypothetical protein | - |
| LRM91_RS22875 (LRM91_22875) | 61187..63835 | + | 2649 | WP_249895805.1 | type IV secretion system protein TraC | - |
| LRM91_RS22880 (LRM91_22880) | 63810..64196 | + | 387 | WP_000102756.1 | type-F conjugative transfer system protein TrbI | - |
| LRM91_RS22885 (LRM91_22885) | 64193..64825 | + | 633 | WP_249895806.1 | type-F conjugative transfer system protein TraW | - |
| LRM91_RS22890 (LRM91_22890) | 64822..65814 | + | 993 | WP_249895807.1 | conjugal transfer pilus assembly protein TraU | - |
| LRM91_RS22895 (LRM91_22895) | 65833..66141 | + | 309 | WP_001576663.1 | hypothetical protein | - |
| LRM91_RS22900 (LRM91_22900) | 66126..66764 | + | 639 | WP_001576661.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| LRM91_RS22905 (LRM91_22905) | 66801..67220 | + | 420 | WP_001229398.1 | HNH endonuclease | - |
| LRM91_RS22910 (LRM91_22910) | 67217..69043 | + | 1827 | WP_249895808.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| LRM91_RS22915 (LRM91_22915) | 69054..69530 | + | 477 | WP_001746543.1 | hypothetical protein | - |
| LRM91_RS22920 (LRM91_22920) | 69541..69756 | + | 216 | WP_001746544.1 | conjugal transfer protein TrbE | - |
| LRM91_RS22925 (LRM91_22925) | 69769..70512 | + | 744 | Protein_94 | type-F conjugative transfer system pilin assembly protein TraF | - |
| LRM91_RS22930 (LRM91_22930) | 70726..71019 | + | 294 | WP_001233883.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| LRM91_RS22935 (LRM91_22935) | 71006..71554 | + | 549 | WP_249895809.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| LRM91_RS22940 (LRM91_22940) | 71544..72815 | + | 1272 | Protein_97 | conjugal transfer pilus assembly protein TraH | - |
| LRM91_RS22945 (LRM91_22945) | 74052..74534 | + | 483 | Protein_98 | surface exclusion protein | - |
| LRM91_RS22950 (LRM91_22950) | 74780..75511 | + | 732 | WP_249895811.1 | conjugal transfer complement resistance protein TraT | - |
| LRM91_RS22955 (LRM91_22955) | 75888..78149 | + | 2262 | Protein_100 | type IV conjugative transfer system coupling protein TraD | - |
| LRM91_RS22960 (LRM91_22960) | 78149..83407 | + | 5259 | WP_249895813.1 | Multifunctional conjugation protein TraI | Relaxase |
| LRM91_RS22965 (LRM91_22965) | 83427..84167 | + | 741 | WP_000177627.1 | conjugal transfer pilus acetylase TraX | - |
| LRM91_RS22970 (LRM91_22970) | 84222..84785 | + | 564 | WP_000129019.1 | fertility inhibition protein FinO | - |
| LRM91_RS22975 (LRM91_22975) | 84902..85183 | + | 282 | Protein_104 | disulfide bond formation protein DsbA | - |
| LRM91_RS22980 (LRM91_22980) | 85464..86030 | + | 567 | Protein_105 | phospholipase D family protein | - |
| LRM91_RS22985 (LRM91_22985) | 86141..86407 | + | 267 | WP_001576653.1 | replication regulatory protein RepA | - |
| LRM91_RS22990 (LRM91_22990) | 86655..86732 | + | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|