MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 49556 bp
Accession: NZ_CP088135 Location: 1..49556 Organism: Salmonella enterica subsp. enterica serovar Gallinarum strain SCPM-O-B-4493 Replicon: plasmid pB-4493_1
Accession: NZ_CP088135 Location: 1..49556 Organism: Salmonella enterica subsp. enterica serovar Gallinarum strain SCPM-O-B-4493 Replicon: plasmid pB-4493_1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LRM90_RS23300 (LRM90_23300) | 14..1051 | - | 1038 | WP_001121399.1 | IS630 family transposase ISEc33 | Transposase |
| LRM90_RS23305 (LRM90_23305) | 1661..2554 | + | 894 | WP_001541536.1 | virulence genes transcriptional activator SpvR | - |
| LRM90_RS23310 (LRM90_23310) | 2728..2892 | + | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| LRM90_RS23315 (LRM90_23315) | 3066..3833 | + | 768 | WP_001541537.1 | virulence protein SpvA | - |
| LRM90_RS23320 (LRM90_23320) | 3796..3963 | + | 168 | WP_001526987.1 | hypothetical protein | - |
| LRM90_RS23325 (LRM90_23325) | 4015..5790 | + | 1776 | WP_079961211.1 | Mono(ADP-ribosyl)transferase SpvB | VF |
| LRM90_RS23330 (LRM90_23330) | 6071..6796 | + | 726 | WP_079961210.1 | MAPK phosphothreonine lyase | VF |
| LRM90_RS23335 (LRM90_23335) | 7057..7707 | + | 651 | WP_001541540.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| LRM90_RS23340 (LRM90_23340) | 7834..8259 | - | 426 | WP_000064919.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| LRM90_RS23345 (LRM90_23345) | 8316..8666 | + | 351 | WP_001541541.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| LRM90_RS23350 (LRM90_23350) | 8733..9277 | - | 545 | Protein_10 | Invasin | VF |
| LRM90_RS23355 (LRM90_23355) | 9172..9495 | - | 324 | WP_223557582.1 | LysM peptidoglycan-binding domain-containing protein | - |
| LRM90_RS23360 (LRM90_23360) | 10012..10497 | - | 486 | WP_000905606.1 | membrane protein | - |
| LRM90_RS23365 (LRM90_23365) | 10491..10916 | - | 426 | WP_001134680.1 | CaiF/GrlA family transcriptional regulator | - |
| LRM90_RS23370 (LRM90_23370) | 11144..11695 | - | 552 | WP_000545754.1 | Cyclic di-GMP phosphodiesterase PdeL | VF |
| LRM90_RS23375 (LRM90_23375) | 11704..12486 | - | 783 | WP_000082169.1 | site-specific integrase | - |
| LRM90_RS23380 (LRM90_23380) | 12521..13042 | - | 522 | WP_000198608.1 | hypothetical protein | - |
| LRM90_RS23385 (LRM90_23385) | 13039..13329 | - | 291 | WP_001266176.1 | hypothetical protein | - |
| LRM90_RS23390 (LRM90_23390) | 13331..13636 | - | 306 | WP_001541545.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| LRM90_RS23395 (LRM90_23395) | 13638..13856 | - | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| LRM90_RS23400 (LRM90_23400) | 14532..15053 | + | 522 | WP_079961209.1 | hypothetical protein | - |
| LRM90_RS23405 (LRM90_23405) | 15097..15525 | - | 429 | Protein_21 | hypothetical protein | - |
| LRM90_RS23410 (LRM90_23410) | 15537..15832 | + | 296 | Protein_22 | cytoplasmic protein | - |
| LRM90_RS23415 (LRM90_23415) | 16326..17315 | + | 990 | WP_000461383.1 | RepB family plasmid replication initiator protein | - |
| LRM90_RS23420 (LRM90_23420) | 17646..17765 | - | 120 | Protein_24 | recombinase | - |
| LRM90_RS23425 (LRM90_23425) | 17818..18204 | - | 387 | WP_001541549.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| LRM90_RS23430 (LRM90_23430) | 18910..19212 | + | 303 | WP_000979451.1 | Major pilu subunit operon regulatory protein PapB | VF |
| LRM90_RS23435 (LRM90_23435) | 19487..20005 | + | 519 | WP_079961207.1 | hypothetical protein | VF |
| LRM90_RS23440 (LRM90_23440) | 20232..22640 | + | 2409 | WP_001541550.1 | Outer membrane usher protein FimD | VF |
| LRM90_RS23445 (LRM90_23445) | 22633..23325 | + | 693 | WP_001038509.1 | Chaperone protein FaeE | VF |
| LRM90_RS23450 (LRM90_23450) | 23343..23519 | + | 177 | WP_162299956.1 | hypothetical protein | - |
| LRM90_RS23455 (LRM90_23455) | 23983..24864 | - | 882 | WP_001676666.1 | incFII family plasmid replication initiator RepA | - |
| LRM90_RS23460 (LRM90_23460) | 24845..24922 | - | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| LRM90_RS23465 (LRM90_23465) | 25172..25438 | - | 267 | WP_016710725.1 | replication regulatory protein RepA | - |
| LRM90_RS23470 (LRM90_23470) | 25549..25718 | - | 170 | Protein_34 | phospholipase | - |
| LRM90_RS23475 (LRM90_23475) | 25769..25966 | - | 198 | WP_223155440.1 | hypothetical protein | - |
| LRM90_RS23480 (LRM90_23480) | 25940..26213 | - | 274 | Protein_36 | disulfide bond formation protein DsbA | - |
| LRM90_RS23485 (LRM90_23485) | 26330..26893 | - | 564 | WP_000139307.1 | fertility inhibition protein FinO | - |
| LRM90_RS23490 (LRM90_23490) | 26948..27688 | - | 741 | WP_000177630.1 | conjugal transfer pilus acetylase TraX | - |
| LRM90_RS23495 (LRM90_23495) | 27708..30202 | - | 2495 | Protein_39 | Multifunctional conjugation protein TraI | Relaxase |
| LRM90_RS23500 (LRM90_23500) | 30284..30511 | + | 228 | WP_000450263.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| LRM90_RS23505 (LRM90_23505) | 30511..30909 | + | 399 | WP_000911322.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LRM90_RS23510 (LRM90_23510) | 30918..33116 | - | 2199 | WP_079970305.1 | type IV conjugative transfer system coupling protein TraD | - |
| LRM90_RS23515 (LRM90_23515) | 33488..34219 | - | 732 | WP_001541558.1 | conjugal transfer complement resistance protein TraT | - |
| LRM90_RS23520 (LRM90_23520) | 34522..34764 | - | 243 | WP_024131413.1 | hypothetical protein | - |
| LRM90_RS23525 (LRM90_23525) | 34761..35462 | - | 702 | WP_148201696.1 | hypothetical protein | - |
| LRM90_RS23530 (LRM90_23530) | 35764..36186 | + | 423 | WP_000925627.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| LRM90_RS23535 (LRM90_23535) | 36186..37460 | + | 1275 | WP_001541560.1 | Y-family DNA polymerase | - |
| LRM90_RS23540 (LRM90_23540) | 37542..38516 | - | 975 | WP_000064274.1 | ParB family protein | - |
| LRM90_RS23545 (LRM90_23545) | 38516..39721 | - | 1206 | WP_000427676.1 | AAA family ATPase | - |
| LRM90_RS23550 (LRM90_23550) | 40136..41077 | + | 942 | WP_000728917.1 | Recombination-promoting nuclease RpnA | VF |
| LRM90_RS23555 (LRM90_23555) | 41074..41675 | - | 602 | Protein_51 | DUF2913 family protein | - |
| LRM90_RS23560 (LRM90_23560) | 41732..42148 | - | 417 | WP_010904490.1 | hypothetical protein | - |
| LRM90_RS23565 (LRM90_23565) | 42251..42667 | - | 417 | WP_001541564.1 | hypothetical protein | - |
| LRM90_RS23570 (LRM90_23570) | 42753..43868 | - | 1116 | WP_001247118.1 | DNA-binding protein | - |
| LRM90_RS23575 (LRM90_23575) | 44127..44615 | + | 489 | Protein_55 | cytoplasmic protein | - |
| LRM90_RS23580 (LRM90_23580) | 45270..46010 | + | 741 | WP_249857174.1 | carbonic anhydrase family protein | - |
| LRM90_RS23585 (LRM90_23585) | 46217..46777 | + | 561 | WP_010904491.1 | Tn3 family transposase ISPsy42 | Transposase |
| LRM90_RS23590 (LRM90_23590) | 46761..48425 | + | 1665 | WP_000098783.1 | IS481 family transposase ISAzs36 | Transposase |
| LRM90_RS23595 (LRM90_23595) | 48358..49383 | + | 1026 | WP_077905935.1 | ExeA family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|