MGE detailed information
MGE type: Genomic_island MGE length: 33219 bp
Accession: NZ_CP087110 Location: 953305..986523 Organism: Escherichia coli strain PJ-T13 Replicon: chromosome
Accession: NZ_CP087110 Location: 953305..986523 Organism: Escherichia coli strain PJ-T13 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LM520_RS04650 (949489) | 949489..950757 | - | 1269 | WP_000271909.1 | L-2-hydroxyglutarate oxidase | - |
| LM520_RS04655 (950777) | 950777..951754 | - | 978 | WP_000993126.1 | glutarate dioxygenase GlaH | - |
| LM520_RS04660 (952090) | 952090..954342 | - | 2253 | Protein_908 | alpha-amylase family glycosyl hydrolase | - |
| LM520_RS04670 (955728) | 955728..957101 | + | 1374 | Protein_909 | DUF5507 domain-containing protein | - |
| LM520_RS04675 (957447) | 957447..957605 | + | 159 | Protein_910 | recombinase family protein | - |
| LM520_RS04680 (957829) | 957829..957948 | + | 120 | WP_001120794.1 | hypothetical protein | - |
| LM520_RS04685 (958096) | 958096..959304 | + | 1209 | WP_001339197.1 | IS4 family transposase IS10R | Transposase |
| LM520_RS04690 (959351) | 959351..963931 | + | 4581 | WP_010723187.1 | hypothetical protein | VF |
| LM520_RS04695 (964295) | 964295..964624 | - | 330 | WP_001094400.1 | type IV toxin-antitoxin system toxin YpjF | Toxin Detail |
| LM520_RS04700 (964645) | 964645..964962 | - | 318 | WP_000072690.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| LM520_RS04705 (965000) | 965000..965200 | - | 201 | WP_001395452.1 | DUF987 domain-containing protein | - |
| LM520_RS04710 (965209) | 965209..965691 | - | 483 | WP_001407480.1 | RadC family protein | - |
| LM520_RS04715 (965700) | 965700..966158 | - | 459 | WP_000211841.1 | antirestriction protein | - |
| LM520_RS04720 (966261) | 966261..966445 | - | 185 | Protein_919 | DUF905 family protein | - |
| LM520_RS04725 (967056) | 967056..968759 | - | 1704 | WP_000896263.1 | protein YfjW | - |
| LM520_RS04730 (968901) | 968901..969910 | + | 1010 | Protein_921 | arsenic transporter | - |
| LM520_RS04735 (969923) | 969923..970075 | + | 153 | Protein_922 | arsenate reductase | - |
| LM520_RS04740 (970462) | 970462..970929 | - | 468 | WP_000702495.1 | protein YfjT | - |
| LM520_RS04745 (970953) | 970953..971396 | - | 444 | WP_000824222.1 | lipoprotein YfjS | - |
| LM520_RS04750 (971396) | 971396..971632 | - | 237 | WP_001144029.1 | protein YpjK | - |
| LM520_RS04755 (971673) | 971673..972374 | - | 702 | WP_000189409.1 | WYL domain-containing protein | - |
| LM520_RS04760 (972591) | 972591..973412 | - | 822 | WP_000197391.1 | DUF932 domain-containing protein | - |
| LM520_RS04765 (973504) | 973504..974367 | - | 864 | WP_000787597.1 | GTPase family protein | - |
| LM520_RS04770 (974722) | 974722..975093 | - | 372 | WP_000461704.1 | type II toxin-antitoxin system antitoxin RnlB | Antitoxin Detail |
| LM520_RS04775 (975086) | 975086..976159 | - | 1074 | WP_000155570.1 | type II toxin-antitoxin system toxin mRNA endoribonuclease RnlA | Toxin Detail |
| LM520_RS04780 (976301) | 976301..976564 | + | 264 | WP_000502050.1 | DUF1524 domain-containing protein | - |
| LM520_RS04785 (976924) | 976924..978540 | + | 1617 | WP_000445380.1 | anti-bacteriophage protein AbpA | - |
| LM520_RS04790 (978537) | 978537..980726 | + | 2190 | WP_000136402.1 | DEAD/DEAH box helicase | - |
| LM520_RS04795 (980904) | 980904..981530 | - | 627 | WP_000220524.1 | inovirus Gp2 family protein | - |
| LM520_RS04800 (981683) | 981683..983092 | - | 1410 | WP_000481742.1 | YfjI family protein | - |
| LM520_RS04805 (983221) | 983221..983433 | - | 213 | WP_001065343.1 | DNA-binding transcriptional activator AlpA | - |
| LM520_RS04810 (983477) | 983477..984433 | + | 957 | WP_000510827.1 | protein YfjH | - |
| LM520_RS04815 (984677) | 984677..985918 | - | 1242 | WP_000101723.1 | hypothetical protein ; Integrase | Integrase |
| LM520_RS04825 (986699) | 986699..987181 | - | 483 | WP_000162574.1 | SsrA-binding protein SmpB | - |
| LM520_RS04830 (987352) | 987352..987789 | + | 438 | WP_001300750.1 | type II toxin-antitoxin system toxin RatA | - |
| LM520_RS04835 (987779) | 987779..988069 | + | 291 | WP_001117838.1 | RnfH family protein | - |
| LM520_RS04840 (988131) | 988131..988472 | - | 342 | WP_001203437.1 | outer membrane protein assembly factor BamE | - |
| LM520_RS04845 (988621) | 988621..990282 | - | 1662 | WP_000880910.1 | DNA repair protein RecN | - |
| LM520_RS04850 (990368) | 990368..991246 | - | 879 | WP_001059169.1 | NAD(+) kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20085, TA20086 | HG738867 | 3996347..4028227 | 0.001 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285030, TA285031 | NZ_HG738867 | 3996347..4028227 | 0.001 |