MGE detailed information
MGE type: Prophage MGE length: 56127 bp
Accession: NZ_CP087110 Location: 2074255..2130381 Organism: Escherichia coli strain PJ-T13 Replicon: chromosome
Accession: NZ_CP087110 Location: 2074255..2130381 Organism: Escherichia coli strain PJ-T13 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LM520_RS10025 (2070346) | 2070346..2070711 | + | 366 | WP_000276149.1 | multidrug/spermidine efflux SMR transporter subunit MdtJ | - |
| LM520_RS10030 (2070698) | 2070698..2071027 | + | 330 | WP_000046661.1 | multidrug/spermidine efflux SMR transporter subunit MdtI | - |
| LM520_RS10035 (2071066) | 2071066..2071887 | - | 822 | WP_001260865.1 | serine protease | - |
| LM520_RS10040 (2071987) | 2071987..2072070 | - | 84 | WP_000233093.1 | stationary phase-induced protein | - |
| LM520_RS10045 (2072163) | 2072163..2072471 | - | 309 | WP_001340364.1 | acid resistance repetitive basic protein Asr | - |
| LM520_RS10050 (2072895) | 2072895..2074148 | - | 1254 | WP_000091840.1 | MFS transporter | - |
| LM520_RS10055 (2074255) | 2074255..2075148 | + | 894 | WP_001019525.1 | hypothetical protein | VF |
| LM520_RS10060 (2075283) | 2075283..2076503 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| LM520_RS10065 (2076628) | 2076628..2077323 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| LM520_RS10070 (2077276) | 2077276..2078568 | - | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| LM520_RS10075 (2078727) | 2078727..2079341 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| LM520_RS10080 (2079384) | 2079384..2080238 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| LM520_RS10085 (2080240) | 2080240..2080857 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| LM520_RS10090 (2080868) | 2080868..2083291 | - | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| LM520_RS10095 (2083352) | 2083352..2085778 | - | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| LM520_RS10100 (2085977) | 2085977..2086282 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| LM520_RS10105 (2086390) | 2086390..2087100 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| LM520_RS10110 (2087103) | 2087103..2087663 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| LM520_RS10115 (2087698) | 2087698..2088039 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| LM520_RS10120 (2088174) | 2088174..2088500 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| LM520_RS10125 (2088706) | 2088706..2089920 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| LM520_RS10130 (2089932) | 2089932..2090951 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| LM520_RS10135 (2091139) | 2091139..2092296 | - | 1158 | Protein_1980 | hypothetical protein ; Integrase | Integrase |
| LM520_RS10140 (2092310) | 2092310..2093005 | - | 696 | Protein_1981 | IS3 family transposase IS2 | Transposase |
| LM520_RS10145 (2093002) | 2093002..2093769 | - | 768 | Protein_1982 | exonuclease | - |
| LM520_RS10150 (2093862) | 2093862..2094053 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| LM520_RS10155 (2094050) | 2094050..2094238 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| LM520_RS10160 (2094806) | 2094806..2095024 | - | 219 | WP_001171942.1 | protein YdfC | - |
| LM520_RS24150 (2095054) | 2095054..2095182 | - | 129 | WP_000344964.1 | protein YdfB | - |
| LM520_RS10165 (2095184) | 2095184..2095339 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| LM520_RS10170 (2095506) | 2095506..2095913 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| LM520_RS10175 (2095997) | 2095997..2096227 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| LM520_RS10180 (2096211) | 2096211..2096489 | + | 279 | Protein_1990 | hypothetical protein | - |
| LM520_RS10185 (2096524) | 2096524..2096673 | + | 150 | WP_011443592.1 | protein YdfW | - |
| LM520_RS10190 (2097110) | 2097110..2097442 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| LM520_RS10195 (2097645) | 2097645..2097950 | - | 306 | WP_001326990.1 | protein YdfV | - |
| LM520_RS10200 (2097975) | 2097975..2098214 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| LM520_RS10205 (2098214) | 2098214..2098501 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| LM520_RS10210 (2098573) | 2098573..2098728 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| LM520_RS10215 (2098945) | 2098945..2099196 | + | 252 | WP_000980994.1 | protein Rem | - |
| LM520_RS10220 (2099263) | 2099263..2099541 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| LM520_RS10225 (2099543) | 2099543..2100592 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| LM520_RS10230 (2100606) | 2100606..2101358 | + | 753 | WP_001047135.1 | antitermination protein | - |
| LM520_RS10235 (2101636) | 2101636..2101725 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| LM520_RS10240 (2101780) | 2101780..2101992 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| LM520_RS10245 (2102293) | 2102293..2102508 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| LM520_RS10250 (2102872) | 2102872..2103042 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| LM520_RS10255 (2103262) | 2103262..2103477 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| LM520_RS10260 (2103482) | 2103482..2103793 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| LM520_RS10265 (2103790) | 2103790..2104323 | + | 534 | WP_001092971.1 | lysozyme | - |
| LM520_RS10270 (2104320) | 2104320..2104817 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| LM520_RS10275 (2105180) | 2105180..2105392 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| LM520_RS10280 (2105403) | 2105403..2105591 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| LM520_RS10285 (2105594) | 2105594..2105659 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| LM520_RS10290 (2105738) | 2105738..2105893 | + | 156 | WP_001309517.1 | protein YnfN | - |
| LM520_RS10295 (2106065) | 2106065..2106238 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| LM520_RS10300 (2106390) | 2106390..2106800 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| LM520_RS10305 (2106858) | 2106858..2107091 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| LM520_RS10310 (2107480) | 2107480..2108049 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| LM520_RS10315 (2108000) | 2108000..2108962 | + | 963 | WP_001027733.1 | phage tail protein | - |
| LM520_RS10320 (2108962) | 2108962..2109537 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| LM520_RS10325 (2109635) | 2109635..2110225 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| LM520_RS10330 (2110542) | 2110542..2110775 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| LM520_RS10335 (2110844) | 2110844..2110957 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| LM520_RS10340 (2111478) | 2111478..2112845 | + | 1368 | Protein_2022 | MHS family MFS transporter | - |
| LM520_RS10345 (2112934) | 2112934..2113272 | + | 339 | Protein_2023 | D-mannonate oxidoreductase | - |
| LM520_RS10350 (2113379) | 2113379..2114587 | + | 1209 | WP_001339197.1 | IS4 family transposase IS10R | Transposase |
| LM520_RS10355 (2114602) | 2114602..2115732 | + | 1131 | Protein_2025 | mannitol dehydrogenase family protein | - |
| LM520_RS10360 (2115767) | 2115767..2115970 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| LM520_RS10365 (2116147) | 2116147..2116833 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| LM520_RS10370 (2116922) | 2116922..2117668 | - | 747 | WP_000636571.1 | hypothetical protein | VF |
| LM520_RS10375 (2117805) | 2117805..2119850 | + | 2046 | WP_000210373.1 | peptidyl-dipeptidase Dcp | - |
| LM520_RS10380 (2119894) | 2119894..2120412 | - | 519 | WP_001024746.1 | 2-oxo-tetronate isomerase | - |
| LM520_RS10385 (2120688) | 2120688..2121080 | + | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
| LM520_RS10390 (2121335) | 2121335..2122225 | + | 891 | WP_000592814.1 | diguanylate cyclase DgcZ | - |
| LM520_RS10395 (2122340) | 2122340..2122444 | - | 105 | WP_211180496.1 | protein MgtT | - |
| LM520_RS10400 (2122444) | 2122444..2122539 | - | 96 | WP_000901367.1 | protein MgtS | - |
| LM520_RS10405 (2122666) | 2122666..2123853 | - | 1188 | WP_001054204.1 | efflux MFS transporter YdeE | - |
| LM520_RS10410 (2124048) | 2124048..2124947 | + | 900 | WP_000087187.1 | O-acetylserine/cysteine exporter | - |
| LM520_RS10415 (2124978) | 2124978..2125196 | - | 219 | WP_000803657.1 | multiple antibiotic resistance protein MarB | - |
| LM520_RS10420 (2125228) | 2125228..2125611 | - | 384 | WP_000091199.1 | hypothetical protein | VF |
| LM520_RS10425 (2125631) | 2125631..2126065 | - | 435 | WP_000843414.1 | multiple antibiotic resistance transcriptional regulator MarR | - |
| LM520_RS10430 (2126277) | 2126277..2126942 | + | 666 | WP_000885033.1 | NAAT family transporter MarC | - |
| LM520_RS10435 (2126967) | 2126967..2128157 | - | 1191 | WP_000210799.1 | L-arabinose MFS transporter | - |
| LM520_RS10440 (2128307) | 2128307..2129422 | - | 1116 | WP_000258599.1 | putative protein YneK | - |
| LM520_RS10445 (2129500) | 2129500..2130381 | - | 882 | WP_000366501.1 | hypothetical protein | VF |
| LM520_RS10450 (2130482) | 2130482..2131870 | + | 1389 | WP_000156615.1 | succinate-semialdehyde dehydrogenase | - |
| LM520_RS10455 (2131934) | 2131934..2132860 | + | 927 | WP_000257409.1 | glutaminase B | - |
| LM520_RS10460 (2132860) | 2132860..2133219 | + | 360 | WP_001191027.1 | DUF4186 domain-containing protein | - |
| LM520_RS10465 (2133292) | 2133292..2134278 | + | 987 | Protein_2047 | GGDEF domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli C | Prophage | TA75071 | NZ_CP020543 | 2249542..2301270 | 0.009 |