MGE detailed information
MGE type: Conjugative plasmid MGE length: 115932 bp
Accession: NZ_CP086511 Location: 1..115932 Organism: Escherichia coli strain Ec-050-T0 Replicon: plasmid pEc-050-T0_1
Accession: NZ_CP086511 Location: 1..115932 Organism: Escherichia coli strain Ec-050-T0 Replicon: plasmid pEc-050-T0_1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LNN50_RS23270 (163) | 163..978 | + | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| LNN50_RS23275 (1065) | 1065..1307 | + | 243 | Protein_1 | phosphoglucosamine mutase | - |
| LNN50_RS23280 (1543) | 1543..3036 | - | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| LNN50_RS23285 (3148) | 3148..3453 | - | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| LNN50_RS23290 (3481) | 3481..4695 | - | 1215 | WP_039026029.1 | Inner membrane transport protein YdhC | ARG |
| LNN50_RS23295 (4912) | 4912..5796 | - | 885 | WP_001447541.1 | DUF3363 domain-containing protein | - |
| LNN50_RS23300 (5827) | 5827..6099 | - | 273 | Protein_6 | IS91 family transposase ISVsa3 | Transposase |
| LNN50_RS23305 (6133) | 6133..8505 | - | 2373 | Protein_7 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| LNN50_RS23310 (8659) | 8659..9519 | - | 861 | WP_021561477.1 | Beta-lactamase TEM | ARG |
| LNN50_RS23315 (9641) | 9641..10345 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| LNN50_RS23320 (10236) | 10236..11207 | - | 972 | WP_242879857.1 | Dihydropteroate synthase | ARG |
| LNN50_RS23325 (11201) | 11201..11548 | - | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| LNN50_RS23330 (11665) | 11665..12503 | - | 839 | Protein_12 | Streptomycin 3''-adenylyltransferase | ARG |
| LNN50_RS23335 (12596) | 12596..13069 | - | 474 | WP_000777555.1 | Dihydrofolate reductase type 1 | ARG |
| LNN50_RS23340 (13226) | 13226..14239 | + | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| LNN50_RS23345 (14586) | 14586..14870 | - | 285 | Protein_15 | recombinase family protein | - |
| LNN50_RS23350 (14936) | 14936..15640 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| LNN50_RS23355 (15674) | 15674..15931 | - | 258 | WP_001596999.1 | hypothetical protein | - |
| LNN50_RS23360 (15976) | 15976..16902 | - | 927 | WP_001290416.1 | hypothetical protein | - |
| LNN50_RS23365 (17434) | 17434..17847 | + | 414 | WP_000465036.1 | hypothetical protein | - |
| LNN50_RS23370 (17849) | 17849..18628 | + | 780 | WP_001164198.1 | site-specific integrase | - |
| LNN50_RS23375 (18808) | 18808..19452 | + | 645 | WP_001144036.1 | ParA family protein | - |
| LNN50_RS23380 (19539) | 19539..19847 | + | 309 | WP_000030199.1 | hypothetical protein | - |
| LNN50_RS23385 (20261) | 20261..21241 | + | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| LNN50_RS23390 (21234) | 21234..21650 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| LNN50_RS23395 (21652) | 21652..22926 | - | 1275 | WP_000457492.1 | Y-family DNA polymerase | - |
| LNN50_RS23400 (22926) | 22926..23363 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| LNN50_RS23405 (23360) | 23360..23608 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| LNN50_RS23410 (24026) | 24026..24928 | + | 903 | WP_000273918.1 | DUF1281 domain-containing protein | - |
| LNN50_RS23415 (24925) | 24925..25236 | + | 312 | WP_010891263.1 | hypothetical protein | - |
| LNN50_RS23420 (25313) | 25313..25996 | + | 684 | WP_000086178.1 | DNA methylase | - |
| LNN50_RS23425 (25997) | 25997..26218 | + | 222 | WP_001104887.1 | hypothetical protein | - |
| LNN50_RS23430 (26178) | 26178..26664 | + | 487 | Protein_32 | DUF1380 family protein | - |
| LNN50_RS23435 (26715) | 26715..27485 | + | 771 | WP_001044393.1 | hypothetical protein | - |
| LNN50_RS23440 (27903) | 27903..28328 | + | 426 | WP_001198886.1 | antirestriction protein | - |
| LNN50_RS23445 (28375) | 28375..28797 | + | 423 | WP_000271729.1 | DUF1380 family protein | - |
| LNN50_RS23450 (28794) | 28794..28985 | + | 192 | WP_001027500.1 | hypothetical protein | - |
| LNN50_RS23455 (29263) | 29263..30930 | - | 1668 | WP_001762494.1 | group II intron reverse transcriptase/maturase | - |
| LNN50_RS23460 (31661) | 31661..31729 | - | 69 | Protein_38 | pilus protein | - |
| LNN50_RS23465 (32098) | 32098..32625 | + | 528 | WP_001276110.1 | single-stranded DNA-binding protein | - |
| LNN50_RS23470 (32683) | 32683..32916 | + | 234 | WP_000006014.1 | DUF905 domain-containing protein | - |
| LNN50_RS23475 (32975) | 32975..34933 | + | 1959 | WP_001145453.1 | ParB/RepB/Spo0J family partition protein | - |
| LNN50_RS23480 (34988) | 34988..35422 | + | 435 | WP_000845897.1 | conjugation system SOS inhibitor PsiB | - |
| LNN50_RS23485 (35419) | 35419..36138 | + | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| LNN50_RS23490 (36135) | 36135..36731 | + | 597 | WP_000978012.1 | hypothetical protein | - |
| LNN50_RS23495 (37194) | 37194..37694 | + | 501 | WP_000117609.1 | antirestriction protein ArdA | - |
| LNN50_RS23500 (38423) | 38423..38857 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| LNN50_RS23505 (38949) | 38949..39215 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| LNN50_RS23510 (39280) | 39280..40221 | + | 942 | WP_000038339.1 | Recombination-promoting nuclease RpnA | VF |
| LNN50_RS23515 (40283) | 40283..40453 | + | 171 | WP_000150325.1 | hypothetical protein | - |
| LNN50_RS23520 (40484) | 40484..40735 | - | 252 | WP_065793177.1 | helix-turn-helix transcriptional regulator | - |
| LNN50_RS23525 (41315) | 41315..41849 | + | 535 | Protein_51 | DUF4942 domain-containing protein | - |
| LNN50_RS23530 (41912) | 41912..42658 | - | 747 | WP_001016257.1 | IS21 family transposase ISEc12 | Transposase |
| LNN50_RS23535 (42673) | 42673..44214 | - | 1542 | WP_002431311.1 | IS21 family transposase ISEc12 | Transposase |
| LNN50_RS23540 (44410) | 44410..44751 | + | 342 | Protein_54 | DUF4942 domain-containing protein | - |
| LNN50_RS23545 (44837) | 44837..45172 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| LNN50_RS23550 (45406) | 45406..45738 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| LNN50_RS23555 (45749) | 45749..48448 | + | 2700 | WP_006855641.1 | Protein TraI | Relaxase |
| LNN50_RS23560 (48485) | 48485..50776 | - | 2292 | WP_001289275.1 | F-type conjugative transfer protein TrbC | - |
| LNN50_RS23565 (50769) | 50769..51839 | - | 1071 | WP_000151576.1 | IncI1-type conjugal transfer protein TrbB | - |
| LNN50_RS23570 (51858) | 51858..53066 | - | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| - (53246) | 53246..53308 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (53246) | 53246..53308 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (53246) | 53246..53308 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (53246) | 53246..53308 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| LNN50_RS23575 (53358) | 53358..53510 | + | 153 | WP_001303307.1 | Hok/Gef family protein | Toxin Detail |
| LNN50_RS23580 (53582) | 53582..53833 | - | 252 | WP_001291965.1 | hypothetical protein | - |
| LNN50_RS26385 (54333) | 54333..54428 | + | 96 | WP_001303310.1 | DinQ-like type I toxin DqlB | - |
| LNN50_RS23590 (54493) | 54493..54630 | - | 138 | WP_047088497.1 | hypothetical protein | - |
| LNN50_RS23595 (54675) | 54675..55901 | - | 1227 | WP_024186316.1 | IS200-IS605 family transposase ISSen6 | Transposase |
| LNN50_RS23600 (55960) | 55960..56364 | + | 405 | WP_001175009.1 | IS200-IS605 family transposase ISSen6 | Transposase |
| LNN50_RS23605 (56696) | 56696..56905 | - | 210 | WP_032178830.1 | hemolysin expression modulator Hha | - |
| LNN50_RS23610 (57003) | 57003..57665 | - | 663 | WP_000644794.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| LNN50_RS23615 (57736) | 57736..59904 | - | 2169 | WP_000698368.1 | DotA/TraY family protein | - |
| LNN50_RS23620 (60001) | 60001..60585 | - | 585 | WP_001476649.1 | IncI1-type conjugal transfer protein TraX | - |
| LNN50_RS23625 (60614) | 60614..61816 | - | 1203 | WP_001189156.1 | IncI1-type conjugal transfer protein TraW | - |
| LNN50_RS23630 (61783) | 61783..62397 | - | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| LNN50_RS23635 (62397) | 62397..65441 | - | 3045 | WP_001024782.1 | IncI1-type conjugal transfer protein TraU | - |
| LNN50_RS23640 (65531) | 65531..66331 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| LNN50_RS23645 (66315) | 66315..66503 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| LNN50_RS23650 (66567) | 66567..66971 | - | 405 | WP_021497835.1 | IncI1-type conjugal transfer protein TraR | - |
| LNN50_RS23655 (67022) | 67022..67549 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| LNN50_RS23660 (67549) | 67549..68253 | - | 705 | WP_001493811.1 | IncI1-type conjugal transfer protein TraP | - |
| LNN50_RS23665 (68253) | 68253..69542 | - | 1290 | WP_001271991.1 | conjugal transfer protein TraO | - |
| LNN50_RS23670 (69545) | 69545..70528 | - | 984 | WP_001191880.1 | hypothetical protein | VF |
| LNN50_RS23675 (70539) | 70539..71231 | - | 693 | WP_000138551.1 | DotI/IcmL family type IV secretion protein | - |
| LNN50_RS23680 (71228) | 71228..71575 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| LNN50_RS23685 (71593) | 71593..75357 | - | 3765 | WP_033560228.1 | DUF5710 domain-containing protein | - |
| LNN50_RS23690 (75447) | 75447..75998 | - | 552 | WP_000014586.1 | Phospholipase D | VF |
| LNN50_RS23695 (76013) | 76013..76303 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| LNN50_RS23700 (76300) | 76300..77448 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| LNN50_RS23705 (77445) | 77445..78263 | - | 819 | WP_032220737.1 | hypothetical protein | VF |
| LNN50_RS23710 (78260) | 78260..78718 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| LNN50_RS23715 (79113) | 79113..79697 | - | 585 | WP_000977525.1 | histidine phosphatase family protein | - |
| LNN50_RS23720 (79757) | 79757..80959 | - | 1203 | WP_065793176.1 | conjugal transfer protein TraF | - |
| LNN50_RS23725 (81045) | 81045..81869 | - | 825 | WP_001690630.1 | conjugal transfer protein TraE | - |
| LNN50_RS23730 (82020) | 82020..83174 | - | 1155 | WP_001139955.1 | site-specific integrase | - |
| LNN50_RS23735 (83173) | 83173..83526 | + | 354 | WP_001393368.1 | hypothetical protein | - |
| LNN50_RS23740 (84695) | 84695..84943 | + | 249 | WP_001349157.1 | hypothetical protein | - |
| LNN50_RS23745 (84940) | 84940..86232 | - | 1293 | WP_001417545.1 | hypothetical protein | VF |
| LNN50_RS23750 (86232) | 86232..86888 | - | 657 | WP_001193553.1 | hypothetical protein | VF |
| LNN50_RS23755 (86873) | 86873..87433 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| LNN50_RS23760 (87443) | 87443..88057 | - | 615 | WP_000959785.1 | hypothetical protein | VF |
| LNN50_RS23765 (88075) | 88075..89172 | - | 1098 | WP_001208805.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| LNN50_RS23770 (89185) | 89185..90738 | - | 1554 | WP_000362202.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| LNN50_RS23775 (90749) | 90749..91201 | - | 453 | WP_001247336.1 | hypothetical protein | VF |
| LNN50_RS23780 (91188) | 91188..92483 | - | 1296 | WP_000752774.1 | type 4b pilus protein PilO2 | - |
| LNN50_RS23785 (92476) | 92476..94158 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| LNN50_RS23790 (94172) | 94172..94609 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| LNN50_RS23795 (94609) | 94609..95676 | - | 1068 | WP_000742600.1 | hypothetical protein | VF |
| LNN50_RS23800 (96350) | 96350..96802 | - | 453 | WP_000008892.1 | hypothetical protein | - |
| LNN50_RS23805 (96845) | 96845..97099 | - | 255 | WP_001136192.1 | PilI type IV pilus biogenesis protein | - |
| LNN50_RS23810 (97367) | 97367..97933 | - | 567 | WP_000776428.1 | protein TraD | - |
| LNN50_RS23815 (97947) | 97947..98630 | - | 684 | WP_000213857.1 | conjugal transfer protein TraC | - |
| LNN50_RS23820 (98884) | 98884..99417 | - | 534 | WP_001303319.1 | transcription termination/antitermination NusG family protein | - |
| LNN50_RS23825 (99859) | 99859..100146 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| LNN50_RS23830 (100064) | 100064..100342 | - | 279 | WP_219065241.1 | ash family protein | - |
| LNN50_RS23835 (101300) | 101300..102331 | + | 1032 | WP_000907873.1 | plasmid replication initiator RepA | - |
| LNN50_RS23840 (103027) | 103027..103185 | + | 159 | WP_000841008.1 | hypothetical protein | - |
| LNN50_RS23845 (103240) | 103240..103509 | + | 270 | WP_000079941.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| LNN50_RS23850 (103509) | 103509..103787 | + | 279 | WP_244442846.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| LNN50_RS23855 (103827) | 103827..104675 | + | 849 | WP_001057996.1 | 3'-5' exonuclease | - |
| LNN50_RS23860 (104792) | 104792..105265 | + | 474 | WP_001334658.1 | hypothetical protein | - |
| LNN50_RS23865 (105742) | 105742..106008 | - | 267 | WP_000955263.1 | hypothetical protein | - |
| LNN50_RS23870 (106008) | 106008..106502 | - | 495 | WP_001459505.1 | hypothetical protein | - |
| LNN50_RS23875 (106558) | 106558..107160 | - | 603 | WP_000517695.1 | ProQ/FINO family protein | - |
| LNN50_RS23880 (107514) | 107514..108860 | + | 1347 | WP_001132032.1 | protein YagA | - |
| LNN50_RS23885 (109139) | 109139..111019 | + | 1881 | WP_001283341.1 | colicin Ia central receptor-binding domain-containing protein | - |
| LNN50_RS23890 (111037) | 111037..111384 | - | 348 | WP_000762570.1 | colicin 1B immunity protein | - |
| LNN50_RS23895 (111503) | 111503..111850 | + | 348 | WP_001407239.1 | DUF6404 family protein | - |
| LNN50_RS23900 (111870) | 111870..112460 | - | 591 | WP_000194553.1 | hypothetical protein | - |
| LNN50_RS23905 (112460) | 112460..112717 | - | 258 | WP_000371888.1 | hypothetical protein | - |
| LNN50_RS23910 (113068) | 113068..114069 | + | 1002 | WP_000774874.1 | DUF4238 domain-containing protein | - |
| LNN50_RS23915 (114245) | 114245..114589 | - | 345 | WP_000793307.1 | hypothetical protein | - |
| LNN50_RS23920 (115175) | 115175..115879 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|