MGE detailed information
MGE type: Conjugative plasmid MGE length: 115932 bp
Accession: NZ_CP086471 Location: 1..115932 Organism: Escherichia coli strain Ec-050-T20-ESBL Replicon: plasmid pEc-050-T20-ESBL_1
Accession: NZ_CP086471 Location: 1..115932 Organism: Escherichia coli strain Ec-050-T20-ESBL Replicon: plasmid pEc-050-T20-ESBL_1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LNN47_RS23275 (46) | 46..1077 | + | 1032 | WP_000907873.1 | plasmid replication initiator RepA | - |
| LNN47_RS23280 (1773) | 1773..1931 | + | 159 | WP_000841008.1 | hypothetical protein | - |
| LNN47_RS23285 (1986) | 1986..2255 | + | 270 | WP_000079941.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| LNN47_RS23290 (2255) | 2255..2533 | + | 279 | WP_244442846.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| LNN47_RS23295 (2573) | 2573..3421 | + | 849 | WP_001057996.1 | 3'-5' exonuclease | - |
| LNN47_RS23300 (3538) | 3538..4011 | + | 474 | WP_001334658.1 | hypothetical protein | - |
| LNN47_RS23305 (4488) | 4488..4754 | - | 267 | WP_000955263.1 | hypothetical protein | - |
| LNN47_RS23310 (4754) | 4754..5248 | - | 495 | WP_001459505.1 | hypothetical protein | - |
| LNN47_RS23315 (5304) | 5304..5906 | - | 603 | WP_000517695.1 | ProQ/FINO family protein | - |
| LNN47_RS23320 (6260) | 6260..7606 | + | 1347 | WP_001132032.1 | protein YagA | - |
| LNN47_RS23325 (7885) | 7885..9765 | + | 1881 | WP_001283341.1 | colicin Ia central receptor-binding domain-containing protein | - |
| LNN47_RS23330 (9783) | 9783..10130 | - | 348 | WP_000762570.1 | colicin 1B immunity protein | - |
| LNN47_RS23335 (10249) | 10249..10596 | + | 348 | WP_001407239.1 | DUF6404 family protein | - |
| LNN47_RS23340 (10616) | 10616..11206 | - | 591 | WP_000194553.1 | hypothetical protein | - |
| LNN47_RS23345 (11206) | 11206..11463 | - | 258 | WP_000371888.1 | hypothetical protein | - |
| LNN47_RS23350 (11814) | 11814..12815 | + | 1002 | WP_000774874.1 | DUF4238 domain-containing protein | - |
| LNN47_RS23355 (12991) | 12991..13335 | - | 345 | WP_000793307.1 | hypothetical protein | - |
| LNN47_RS23360 (13921) | 13921..14625 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| LNN47_RS23365 (14841) | 14841..15656 | + | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| LNN47_RS23370 (15743) | 15743..15985 | + | 243 | Protein_19 | phosphoglucosamine mutase | - |
| LNN47_RS23375 (16221) | 16221..17714 | - | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| LNN47_RS23380 (17826) | 17826..18131 | - | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| LNN47_RS23385 (18159) | 18159..19373 | - | 1215 | WP_039026029.1 | Inner membrane transport protein YdhC | ARG |
| LNN47_RS23390 (19590) | 19590..20474 | - | 885 | WP_001447541.1 | DUF3363 domain-containing protein | - |
| LNN47_RS23395 (20505) | 20505..20777 | - | 273 | Protein_24 | IS91 family transposase ISVsa3 | Transposase |
| LNN47_RS23400 (20811) | 20811..23183 | - | 2373 | Protein_25 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| LNN47_RS23405 (23337) | 23337..24197 | - | 861 | WP_021561477.1 | Beta-lactamase TEM | ARG |
| LNN47_RS23410 (24319) | 24319..25023 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| LNN47_RS23415 (24914) | 24914..25885 | - | 972 | WP_242879857.1 | Dihydropteroate synthase | ARG |
| LNN47_RS23420 (25879) | 25879..26226 | - | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| LNN47_RS23425 (26343) | 26343..27181 | - | 839 | Protein_30 | Streptomycin 3''-adenylyltransferase | ARG |
| LNN47_RS23430 (27274) | 27274..27747 | - | 474 | WP_000777555.1 | Dihydrofolate reductase type 1 | ARG |
| LNN47_RS23435 (27904) | 27904..28917 | + | 1014 | WP_000845048.1 | class 1 integron integrase IntI1 | - |
| LNN47_RS23440 (29264) | 29264..29548 | - | 285 | Protein_33 | recombinase family protein | - |
| LNN47_RS23445 (29614) | 29614..30318 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| LNN47_RS23450 (30352) | 30352..30609 | - | 258 | WP_001596999.1 | hypothetical protein | - |
| LNN47_RS23455 (30654) | 30654..31580 | - | 927 | WP_001290416.1 | hypothetical protein | - |
| LNN47_RS23460 (32112) | 32112..32525 | + | 414 | WP_000465036.1 | hypothetical protein | - |
| LNN47_RS23465 (32527) | 32527..33306 | + | 780 | WP_001164198.1 | site-specific integrase | - |
| LNN47_RS23470 (33486) | 33486..34130 | + | 645 | WP_001144036.1 | ParA family protein | - |
| LNN47_RS23475 (34217) | 34217..34525 | + | 309 | WP_000030199.1 | hypothetical protein | - |
| LNN47_RS23480 (34939) | 34939..35919 | + | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| LNN47_RS23485 (35912) | 35912..36328 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| LNN47_RS23490 (36330) | 36330..37604 | - | 1275 | WP_000457492.1 | Y-family DNA polymerase | - |
| LNN47_RS23495 (37604) | 37604..38041 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| LNN47_RS23500 (38038) | 38038..38286 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| LNN47_RS23505 (38704) | 38704..39606 | + | 903 | WP_000273918.1 | DUF1281 domain-containing protein | - |
| LNN47_RS23510 (39603) | 39603..39914 | + | 312 | WP_010891263.1 | hypothetical protein | - |
| LNN47_RS23515 (39991) | 39991..40674 | + | 684 | WP_000086178.1 | DNA methylase | - |
| LNN47_RS23520 (40675) | 40675..40896 | + | 222 | WP_001104887.1 | hypothetical protein | - |
| LNN47_RS23525 (40856) | 40856..41342 | + | 487 | Protein_50 | DUF1380 family protein | - |
| LNN47_RS23530 (41393) | 41393..42163 | + | 771 | WP_001044393.1 | hypothetical protein | - |
| LNN47_RS23535 (42581) | 42581..43006 | + | 426 | WP_001198886.1 | antirestriction protein | - |
| LNN47_RS23540 (43053) | 43053..43475 | + | 423 | WP_000271729.1 | DUF1380 family protein | - |
| LNN47_RS23545 (43472) | 43472..43663 | + | 192 | WP_001027500.1 | hypothetical protein | - |
| LNN47_RS23550 (43941) | 43941..45608 | - | 1668 | WP_001762494.1 | group II intron reverse transcriptase/maturase | - |
| LNN47_RS23555 (46339) | 46339..46407 | - | 69 | Protein_56 | pilus protein | - |
| LNN47_RS23560 (46776) | 46776..47303 | + | 528 | WP_001276110.1 | single-stranded DNA-binding protein | - |
| LNN47_RS23565 (47361) | 47361..47594 | + | 234 | WP_000006014.1 | DUF905 domain-containing protein | - |
| LNN47_RS23570 (47653) | 47653..49611 | + | 1959 | WP_001145453.1 | ParB/RepB/Spo0J family partition protein | - |
| LNN47_RS23575 (49666) | 49666..50100 | + | 435 | WP_000845897.1 | conjugation system SOS inhibitor PsiB | - |
| LNN47_RS23580 (50097) | 50097..50816 | + | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| LNN47_RS23585 (50813) | 50813..51409 | + | 597 | WP_000978012.1 | hypothetical protein | - |
| LNN47_RS23590 (51872) | 51872..52372 | + | 501 | WP_000117609.1 | antirestriction protein ArdA | - |
| LNN47_RS23595 (53101) | 53101..53535 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| LNN47_RS23600 (53627) | 53627..53893 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| LNN47_RS23605 (53958) | 53958..54899 | + | 942 | WP_000038339.1 | Recombination-promoting nuclease RpnA | VF |
| LNN47_RS23610 (54961) | 54961..55131 | + | 171 | WP_000150325.1 | hypothetical protein | - |
| LNN47_RS23615 (55162) | 55162..55413 | - | 252 | WP_065793177.1 | helix-turn-helix transcriptional regulator | - |
| LNN47_RS23620 (55993) | 55993..56527 | + | 535 | Protein_69 | DUF4942 domain-containing protein | - |
| LNN47_RS23625 (56590) | 56590..57336 | - | 747 | WP_001016257.1 | IS21 family transposase ISEc12 | Transposase |
| LNN47_RS23630 (57351) | 57351..58892 | - | 1542 | WP_002431311.1 | IS21 family transposase ISEc12 | Transposase |
| LNN47_RS23635 (59088) | 59088..59429 | + | 342 | Protein_72 | DUF4942 domain-containing protein | - |
| LNN47_RS23640 (59515) | 59515..59850 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| LNN47_RS23645 (60084) | 60084..60416 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| LNN47_RS23650 (60427) | 60427..63126 | + | 2700 | WP_006855641.1 | Protein TraI | Relaxase |
| LNN47_RS23655 (63163) | 63163..65454 | - | 2292 | WP_001289275.1 | F-type conjugative transfer protein TrbC | - |
| LNN47_RS23660 (65447) | 65447..66517 | - | 1071 | WP_000151576.1 | IncI1-type conjugal transfer protein TrbB | - |
| LNN47_RS23665 (66536) | 66536..67744 | - | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| - (67924) | 67924..67986 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (67924) | 67924..67986 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (67924) | 67924..67986 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (67924) | 67924..67986 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| LNN47_RS23670 (68036) | 68036..68188 | + | 153 | WP_001303307.1 | Hok/Gef family protein | Toxin Detail |
| LNN47_RS23675 (68260) | 68260..68511 | - | 252 | WP_001291965.1 | hypothetical protein | - |
| LNN47_RS26385 (69011) | 69011..69106 | + | 96 | WP_001303310.1 | DinQ-like type I toxin DqlB | - |
| LNN47_RS23685 (69171) | 69171..69308 | - | 138 | WP_047088497.1 | hypothetical protein | - |
| LNN47_RS23690 (69353) | 69353..70579 | - | 1227 | WP_024186316.1 | IS200-IS605 family transposase ISSen6 | Transposase |
| LNN47_RS23695 (70638) | 70638..71042 | + | 405 | WP_001175009.1 | IS200-IS605 family transposase ISSen6 | Transposase |
| LNN47_RS23700 (71374) | 71374..71583 | - | 210 | WP_032178830.1 | hemolysin expression modulator Hha | - |
| LNN47_RS23705 (71681) | 71681..72343 | - | 663 | WP_000644794.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| LNN47_RS23710 (72414) | 72414..74582 | - | 2169 | WP_000698368.1 | DotA/TraY family protein | - |
| LNN47_RS23715 (74679) | 74679..75263 | - | 585 | WP_001476649.1 | IncI1-type conjugal transfer protein TraX | - |
| LNN47_RS23720 (75292) | 75292..76494 | - | 1203 | WP_001189156.1 | IncI1-type conjugal transfer protein TraW | - |
| LNN47_RS23725 (76461) | 76461..77075 | - | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| LNN47_RS23730 (77075) | 77075..80119 | - | 3045 | WP_001024782.1 | IncI1-type conjugal transfer protein TraU | - |
| LNN47_RS23735 (80209) | 80209..81009 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| LNN47_RS23740 (80993) | 80993..81181 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| LNN47_RS23745 (81245) | 81245..81649 | - | 405 | WP_021497835.1 | IncI1-type conjugal transfer protein TraR | - |
| LNN47_RS23750 (81700) | 81700..82227 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| LNN47_RS23755 (82227) | 82227..82931 | - | 705 | WP_001493811.1 | IncI1-type conjugal transfer protein TraP | - |
| LNN47_RS23760 (82931) | 82931..84220 | - | 1290 | WP_001271991.1 | conjugal transfer protein TraO | - |
| LNN47_RS23765 (84223) | 84223..85206 | - | 984 | WP_001191880.1 | hypothetical protein | VF |
| LNN47_RS23770 (85217) | 85217..85909 | - | 693 | WP_000138551.1 | DotI/IcmL family type IV secretion protein | - |
| LNN47_RS23775 (85906) | 85906..86253 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| LNN47_RS23780 (86271) | 86271..90035 | - | 3765 | WP_033560228.1 | DUF5710 domain-containing protein | - |
| LNN47_RS23785 (90125) | 90125..90676 | - | 552 | WP_000014586.1 | Phospholipase D | VF |
| LNN47_RS23790 (90691) | 90691..90981 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| LNN47_RS23795 (90978) | 90978..92126 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| LNN47_RS23800 (92123) | 92123..92941 | - | 819 | WP_032220737.1 | hypothetical protein | VF |
| LNN47_RS23805 (92938) | 92938..93396 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| LNN47_RS23810 (93791) | 93791..94375 | - | 585 | WP_000977525.1 | histidine phosphatase family protein | - |
| LNN47_RS23815 (94435) | 94435..95637 | - | 1203 | WP_065793176.1 | conjugal transfer protein TraF | - |
| LNN47_RS23820 (95723) | 95723..96547 | - | 825 | WP_001690630.1 | conjugal transfer protein TraE | - |
| LNN47_RS23825 (96698) | 96698..97852 | - | 1155 | WP_001139955.1 | site-specific integrase | - |
| LNN47_RS23830 (97851) | 97851..98135 | + | 285 | WP_187642572.1 | pilus assembly protein PilV | - |
| LNN47_RS23835 (99486) | 99486..100910 | - | 1425 | WP_001389385.1 | hypothetical protein | VF |
| LNN47_RS23840 (100910) | 100910..101566 | - | 657 | WP_001193553.1 | hypothetical protein | VF |
| LNN47_RS23845 (101551) | 101551..102111 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| LNN47_RS23850 (102121) | 102121..102735 | - | 615 | WP_000959785.1 | hypothetical protein | VF |
| LNN47_RS23855 (102753) | 102753..103850 | - | 1098 | WP_001208805.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| LNN47_RS23860 (103863) | 103863..105416 | - | 1554 | WP_000362202.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| LNN47_RS23865 (105427) | 105427..105879 | - | 453 | WP_001247336.1 | hypothetical protein | VF |
| LNN47_RS23870 (105866) | 105866..107161 | - | 1296 | WP_000752774.1 | type 4b pilus protein PilO2 | - |
| LNN47_RS23875 (107154) | 107154..108836 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| LNN47_RS23880 (108850) | 108850..109287 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| LNN47_RS23885 (109287) | 109287..110354 | - | 1068 | WP_000742600.1 | hypothetical protein | VF |
| LNN47_RS23890 (111028) | 111028..111480 | - | 453 | WP_000008892.1 | hypothetical protein | - |
| LNN47_RS23895 (111523) | 111523..111777 | - | 255 | WP_001136192.1 | PilI type IV pilus biogenesis protein | - |
| LNN47_RS23900 (112045) | 112045..112611 | - | 567 | WP_000776428.1 | protein TraD | - |
| LNN47_RS23905 (112625) | 112625..113308 | - | 684 | WP_000213857.1 | conjugal transfer protein TraC | - |
| LNN47_RS23910 (113562) | 113562..114095 | - | 534 | WP_001303319.1 | transcription termination/antitermination NusG family protein | - |
| LNN47_RS23915 (114537) | 114537..114824 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| LNN47_RS23920 (114742) | 114742..115020 | - | 279 | WP_219065241.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|