MGE detailed information
MGE type: Genomic_island MGE length: 10427 bp
Accession: NZ_CP086118 Location: 1027780..1038206 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain S34 Replicon: chromosome
Accession: NZ_CP086118 Location: 1027780..1038206 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain S34 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLY43_RS04920 (1022893) | 1022893..1023273 | + | 381 | WP_001070479.1 | DUF4440 domain-containing protein | - |
| LLY43_RS04925 (1023329) | 1023329..1025896 | - | 2568 | WP_001005807.1 | DNA mismatch repair protein MutS | - |
| LLY43_RS04930 (1026055) | 1026055..1026576 | + | 522 | WP_000858988.1 | hypothetical protein | - |
| LLY43_RS04935 (1026748) | 1026748..1027404 | - | 657 | WP_000420452.1 | protein-serine/threonine phosphatase | - |
| LLY43_RS04940 (1027751) | 1027751..1027956 | + | 206 | Protein_970 | IS5/IS1182 family transposase | - |
| LLY43_RS04945 (1028029) | 1028029..1028556 | - | 528 | WP_000971655.1 | GNAT family N-acetyltransferase | Toxin Detail |
| LLY43_RS04950 (1028553) | 1028553..1028843 | - | 291 | WP_000855692.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| LLY43_RS04955 (1029113) | 1029113..1029291 | - | 179 | Protein_973 | IS3 family transposase | - |
| LLY43_RS04960 (1029532) | 1029532..1029858 | + | 327 | WP_000393302.1 | hypothetical protein | - |
| LLY43_RS04965 (1030131) | 1030131..1030478 | - | 348 | WP_001669174.1 | DUF1493 family protein | - |
| LLY43_RS04970 (1030463) | 1030463..1030912 | - | 450 | WP_000381610.1 | membrane protein | - |
| LLY43_RS04975 (1031343) | 1031343..1031786 | - | 444 | WP_000715092.1 | SPI-1 type III secretion system invasion lipoprotein InvH | - |
| LLY43_RS04980 (1032243) | 1032243..1032893 | + | 651 | WP_001674874.1 | type III secretion system transcriptional activator InvF | - |
| LLY43_RS04985 (1032890) | 1032890..1034578 | + | 1689 | WP_000848113.1 | type III secretion system outer membrane ring protein InvG | - |
| LLY43_RS04990 (1034575) | 1034575..1035693 | + | 1119 | WP_000612171.1 | type III secretion system gatekeeper InvE | - |
| LLY43_RS04995 (1035718) | 1035718..1037775 | + | 2058 | WP_000927219.1 | type III secretion system export apparatus protein InvA | - |
| LLY43_RS05000 (1037799) | 1037799..1038206 | + | 408 | WP_001164066.1 | SPI-1 type III secretion system chaperone SpaK | - |
| LLY43_RS05005 (1038203) | 1038203..1039498 | + | 1296 | WP_000856766.1 | SctN family type III secretion system ATPase InvC | - |
| LLY43_RS05010 (1039476) | 1039476..1039919 | + | 444 | WP_001520714.1 | SPI-1 type III secretion system protein SpaM | - |
| LLY43_RS05015 (1039919) | 1039919..1040929 | + | 1011 | WP_000503098.1 | SPI-1 type III secretion system protein SpaN | - |
| LLY43_RS05020 (1040929) | 1040929..1041840 | + | 912 | WP_000058734.1 | SPI-1 type III secretion system protein SpaO | - |
| LLY43_RS05025 (1041830) | 1041830..1042504 | + | 675 | WP_000526016.1 | SPI-1 type III secretion system export apparatus protein SpaP | - |
| LLY43_RS05030 (1042530) | 1042530..1042790 | + | 261 | WP_000342503.1 | SPI-1 type III secretion system export apparatus protein SpaQ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA10052 | UFRD01000002 | 4599654..4610080 | 0 |