MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 89676 bp
Accession: NZ_CP085859 Location: 1..89676 Organism: Vibrio parahaemolyticus strain LH214 Replicon: plasmid pLH214-1
Accession: NZ_CP085859 Location: 1..89676 Organism: Vibrio parahaemolyticus strain LH214 Replicon: plasmid pLH214-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JK088_RS24405 (JK088_24395) | 769..1071 | + | 303 | WP_047625862.1 | hypothetical protein | - |
| JK088_RS24410 (JK088_24400) | 1071..3272 | + | 2202 | WP_268206392.1 | type IA DNA topoisomerase | - |
| JK088_RS24415 (JK088_24405) | 3269..3667 | + | 399 | WP_182947032.1 | H-NS family nucleoid-associated regulatory protein | - |
| JK088_RS24420 (JK088_24410) | 4460..6367 | + | 1908 | WP_248248998.1 | type IV secretion system DNA-binding domain-containing protein | - |
| JK088_RS24425 (JK088_24415) | 6383..7129 | + | 747 | WP_032640112.1 | hypothetical protein | Relaxase |
| JK088_RS24430 (JK088_24420) | 7122..7649 | + | 528 | WP_268206393.1 | Phospholipase D | VF |
| JK088_RS24435 (JK088_24425) | 7681..8112 | - | 432 | WP_268206394.1 | hypothetical protein | - |
| JK088_RS24440 (JK088_24430) | 8244..8555 | - | 312 | WP_268206395.1 | hypothetical protein | - |
| JK088_RS24445 (JK088_24435) | 8591..9550 | - | 960 | WP_248212866.1 | zincin-like metallopeptidase domain-containing protein | - |
| JK088_RS24450 (JK088_24440) | 9994..10263 | + | 270 | WP_268206396.1 | hypothetical protein | - |
| JK088_RS24455 (JK088_24445) | 10294..10575 | + | 282 | WP_047626394.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| JK088_RS24460 (JK088_24450) | 10575..10877 | + | 303 | WP_047626395.1 | HigA family addiction module antitoxin | - |
| JK088_RS24465 (JK088_24455) | 12543..13502 | + | 960 | WP_268206420.1 | plasmid segregation protein ParM | - |
| JK088_RS24470 (JK088_24460) | 13545..13931 | + | 387 | WP_049001901.1 | plasmid partitioning/stability family protein | - |
| JK088_RS24475 (JK088_24465) | 14138..14761 | + | 624 | WP_032639997.1 | ParA family partition ATPase | - |
| JK088_RS24480 (JK088_24470) | 14758..14976 | + | 219 | WP_232101232.1 | plasmid partition protein ParG | - |
| JK088_RS24485 (JK088_24475) | 15222..15752 | - | 531 | WP_268206397.1 | GNAT family N-acetyltransferase | Toxin Detail |
| JK088_RS24490 (JK088_24480) | 15757..16026 | - | 270 | WP_047626400.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| JK088_RS24495 (JK088_24485) | 16643..17560 | - | 918 | WP_050511221.1 | RepB family plasmid replication initiator protein | - |
| JK088_RS24500 (JK088_24490) | 18183..18656 | + | 474 | WP_268206398.1 | hypothetical protein | - |
| JK088_RS24505 (JK088_24495) | 18681..18959 | + | 279 | WP_268206399.1 | hypothetical protein | - |
| JK088_RS24510 (JK088_24500) | 19155..20075 | - | 921 | WP_268206400.1 | hypothetical protein | - |
| JK088_RS24515 (JK088_24505) | 20120..20737 | - | 618 | WP_268206401.1 | hypothetical protein | - |
| JK088_RS24520 (JK088_24510) | 20808..21293 | - | 486 | WP_268206402.1 | ImmA/IrrE family metallo-endopeptidase | - |
| JK088_RS24525 (JK088_24515) | 21529..22377 | - | 849 | WP_268206403.1 | Replication protein repL | - |
| JK088_RS24530 (JK088_24520) | 22383..22616 | - | 234 | WP_248169828.1 | hypothetical protein | - |
| JK088_RS24535 (JK088_24525) | 22613..22816 | - | 204 | WP_248212878.1 | host cell division inhibitor Icd-like protein | - |
| JK088_RS24540 (JK088_24530) | 23257..23559 | - | 303 | WP_268206404.1 | hypothetical protein | - |
| JK088_RS24545 (JK088_24535) | 23895..24485 | + | 591 | WP_268206421.1 | DNA-binding protein | - |
| JK088_RS24550 (JK088_24540) | 24482..25288 | + | 807 | WP_268206405.1 | hypothetical protein | - |
| JK088_RS24555 (JK088_24545) | 25362..26495 | - | 1134 | WP_268206422.1 | DUF3800 domain-containing protein | - |
| JK088_RS24560 (JK088_24550) | 26758..27432 | + | 675 | WP_268206406.1 | hypothetical protein | - |
| JK088_RS24565 (JK088_24555) | 27436..28218 | + | 783 | WP_268206407.1 | hypothetical protein | - |
| JK088_RS24570 (JK088_24560) | 28220..28411 | - | 192 | Protein_35 | complement resistance protein TraT | - |
| JK088_RS24575 | 28654..28833 | - | 180 | Protein_36 | hypothetical protein | - |
| JK088_RS24580 | 28861..28950 | - | 90 | Protein_37 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| JK088_RS24585 (JK088_24570) | 28937..29197 | - | 261 | WP_049001970.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| JK088_RS24590 (JK088_24575) | 29775..30005 | + | 231 | Protein_39 | type II toxin-antitoxin system VapB family antitoxin | - |
| JK088_RS24595 (JK088_24580) | 30002..30187 | + | 186 | Protein_40 | hypothetical protein | - |
| JK088_RS24600 (JK088_24585) | 31151..31589 | + | 439 | Protein_41 | hypothetical protein | - |
| JK088_RS24605 (JK088_24590) | 31928..32167 | + | 240 | WP_268206408.1 | hypothetical protein | - |
| JK088_RS24610 (JK088_24595) | 32630..32890 | - | 261 | WP_268206409.1 | hypothetical protein | - |
| JK088_RS24615 (JK088_24600) | 33077..33238 | - | 162 | WP_268206410.1 | hypothetical protein | - |
| JK088_RS24620 (JK088_24605) | 33461..34819 | - | 1359 | WP_268206411.1 | putative signaling protein | VF |
| JK088_RS24625 (JK088_24610) | 35030..35449 | - | 420 | WP_268206412.1 | ASCH domain-containing protein | - |
| JK088_RS24630 (JK088_24615) | 35690..36046 | - | 357 | WP_268206413.1 | DUF4440 domain-containing protein | - |
| JK088_RS24635 (JK088_24620) | 36292..36957 | - | 666 | WP_268206414.1 | AbiV family abortive infection protein | - |
| JK088_RS24640 (JK088_24625) | 37026..37277 | - | 252 | Protein_49 | IS3 family transposase IS1400 | Transposase |
| JK088_RS24645 (JK088_24630) | 37759..38025 | + | 267 | WP_268206415.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| JK088_RS24650 (JK088_24635) | 38013..38498 | + | 486 | WP_248212935.1 | GNAT family N-acetyltransferase | Toxin Detail |
| JK088_RS24655 (JK088_24640) | 38689..38944 | + | 256 | Protein_52 | ISNCY family transposase ISKpn21 | Transposase |
| JK088_RS24660 (JK088_24645) | 39125..39496 | + | 372 | WP_049134827.1 | hypothetical protein | - |
| JK088_RS24665 (JK088_24650) | 39780..42008 | - | 2229 | WP_268206416.1 | Mov34/MPN/PAD-1 family protein | - |
| JK088_RS24670 (JK088_24655) | 42008..43183 | - | 1176 | WP_268206417.1 | metallohydrolase | - |
| JK088_RS24675 (JK088_24660) | 43320..44174 | + | 855 | WP_268206418.1 | WYL domain-containing protein | - |
| JK088_RS24680 (JK088_24665) | 44188..44712 | + | 525 | WP_268206419.1 | hypothetical protein | - |
| JK088_RS24685 (JK088_24670) | 45102..46250 | - | 1149 | WP_268206365.1 | hypothetical protein | - |
| JK088_RS24690 (JK088_24675) | 46499..47488 | + | 990 | WP_268206366.1 | tyrosine-type recombinase/integrase | - |
| JK088_RS24695 (JK088_24680) | 48460..49377 | - | 918 | WP_268206367.1 | helix-turn-helix domain-containing protein | - |
| JK088_RS24700 (JK088_24685) | 49380..50801 | - | 1422 | WP_268206368.1 | putative signaling protein | VF |
| JK088_RS24705 (JK088_24690) | 50961..51659 | - | 699 | WP_268206369.1 | molecular chaperone | - |
| JK088_RS24710 (JK088_24695) | 51656..52987 | - | 1332 | WP_268206370.1 | fimbrial protein | - |
| JK088_RS24715 (JK088_24700) | 52984..55554 | - | 2571 | WP_268206371.1 | Outer membrane usher protein HtrE | VF |
| JK088_RS24720 (JK088_24705) | 55520..56224 | - | 705 | WP_268206372.1 | Chaperone protein FimC | VF |
| JK088_RS24725 (JK088_24710) | 56273..56833 | - | 561 | WP_047626701.1 | Major fimbrial subunit SMF-1 | VF |
| JK088_RS24730 (JK088_24715) | 57321..57482 | - | 162 | WP_268206373.1 | hypothetical protein | - |
| JK088_RS24735 (JK088_24720) | 58104..59012 | + | 909 | WP_268206374.1 | DHH family phosphoesterase | - |
| JK088_RS24740 (JK088_24725) | 59009..59434 | + | 426 | WP_248169851.1 | universal stress protein | - |
| JK088_RS24745 (JK088_24730) | 59451..60740 | + | 1290 | WP_248163018.1 | phosphopyruvate hydratase | - |
| JK088_RS24750 (JK088_24735) | 60835..61212 | + | 378 | WP_268206375.1 | fluoride efflux transporter CrcB | - |
| JK088_RS24755 (JK088_24740) | 61297..63294 | - | 1998 | WP_268206376.1 | choline BCCT transporter BetT | - |
| JK088_RS24760 (JK088_24745) | 63555..63884 | + | 330 | WP_268206377.1 | hypothetical protein | - |
| JK088_RS24765 (JK088_24750) | 63859..64582 | - | 724 | Protein_74 | DUF4225 domain-containing protein | - |
| JK088_RS24770 (JK088_24755) | 65937..66788 | - | 852 | WP_064786185.1 | protein deglycase HchA | - |
| JK088_RS24775 (JK088_24760) | 67073..67273 | - | 201 | WP_268206378.1 | hypothetical protein | - |
| JK088_RS24780 (JK088_24765) | 67276..67824 | - | 549 | WP_268206379.1 | cytochrome b561 | - |
| JK088_RS24785 (JK088_24770) | 67987..68634 | + | 648 | WP_268206380.1 | hypothetical protein | VF |
| JK088_RS24790 (JK088_24775) | 68624..70066 | + | 1443 | WP_268206381.1 | Long-chain-fatty-acid--CoA ligase | VF |
| JK088_RS24795 (JK088_24780) | 70063..70728 | + | 666 | WP_111965055.1 | iron-containing redox enzyme family protein | - |
| JK088_RS24800 (JK088_24785) | 70715..71521 | + | 807 | WP_268206382.1 | putative oxidoreductase | VF |
| JK088_RS24805 (JK088_24790) | 71518..72138 | + | 621 | WP_049000183.1 | hypothetical protein | VF |
| JK088_RS24810 (JK088_24795) | 72196..72478 | - | 283 | Protein_83 | transposase | - |
| JK088_RS24815 (JK088_24800) | 72617..73027 | + | 411 | WP_268206383.1 | ASCH domain-containing protein | - |
| JK088_RS24820 (JK088_24805) | 73049..73171 | + | 123 | Protein_85 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| JK088_RS24825 (JK088_24810) | 73184..73370 | + | 187 | Protein_86 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | - |
| JK088_RS24830 (JK088_24815) | 73578..75125 | - | 1548 | WP_268206384.1 | Methyl-accepting chemotaxis protein III | VF |
| JK088_RS24835 (JK088_24820) | 76785..77165 | - | 381 | WP_197672344.1 | helix-turn-helix transcriptional regulator | - |
| JK088_RS24840 (JK088_24825) | 77435..77749 | + | 315 | WP_268206385.1 | hypothetical protein | - |
| JK088_RS24845 (JK088_24830) | 77739..77930 | + | 192 | WP_268206386.1 | hypothetical protein | - |
| JK088_RS24850 (JK088_24835) | 78039..78701 | + | 663 | WP_268206387.1 | Type IV secretion system protein virB1 | VF |
| JK088_RS24855 (JK088_24840) | 78711..79010 | + | 300 | WP_111965996.1 | TrbC/VirB2 family protein | - |
| JK088_RS24860 (JK088_24845) | 79020..81770 | + | 2751 | WP_268206388.1 | Type IV secretion system protein virB4 | VF |
| JK088_RS24865 (JK088_24850) | 81789..82505 | + | 717 | WP_047626935.1 | type IV secretion system protein | - |
| JK088_RS24870 (JK088_24855) | 82517..82783 | + | 267 | WP_047626934.1 | EexN family lipoprotein | - |
| JK088_RS24875 (JK088_24860) | 82805..83803 | + | 999 | WP_047626933.1 | type IV secretion system protein | - |
| JK088_RS24880 (JK088_24865) | 83882..84022 | + | 141 | WP_032640091.1 | hypothetical protein | - |
| JK088_RS24885 (JK088_24870) | 84015..84701 | + | 687 | WP_064790891.1 | type IV secretion system protein | - |
| JK088_RS24890 (JK088_24875) | 84694..85587 | + | 894 | WP_248169862.1 | Type IV secretion system protein virB9 | VF |
| JK088_RS24895 (JK088_24880) | 85584..86780 | + | 1197 | WP_268206389.1 | Type IV secretion system protein virB10 | VF |
| JK088_RS24900 (JK088_24885) | 86784..87833 | + | 1050 | WP_151413599.1 | Type IV secretion system protein VirB11 | VF |
| JK088_RS24905 (JK088_24890) | 87820..88221 | + | 402 | WP_248169864.1 | cag pathogenicity island Cag12 family protein | - |
| JK088_RS24910 (JK088_24895) | 88311..88628 | + | 318 | WP_047626928.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|