MGE detailed information
MGE type: Prophage MGE length: 46863 bp
Accession: NZ_CP085820 Location: 4429873..4476735 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain Wartortle Replicon: chromosome
Accession: NZ_CP085820 Location: 4429873..4476735 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain Wartortle Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJF64_RS21290 () | 4425310..4426683 | + | 1374 | WP_000416128.1 | MFS transporter | - |
| LJF64_RS21295 () | 4426731..4427612 | - | 882 | WP_000984498.1 | protease HtpX | - |
| LJF64_RS21300 () | 4427805..4429853 | - | 2049 | WP_001091237.1 | carboxy terminal-processing peptidase | - |
| LJF64_RS21305 () | 4429873..4430559 | - | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| LJF64_RS21310 () | 4430657..4431154 | - | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| LJF64_RS21315 () | 4431283..4432566 | + | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| LJF64_RS21320 () | 4432535..4435168 | + | 2634 | WP_001535256.1 | PqiB family protein | - |
| LJF64_RS21325 () | 4435246..4436685 | + | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LJF64_RS21330 () | 4436803..4437039 | + | 237 | WP_024131108.1 | YebV family protein | - |
| LJF64_RS21335 () | 4437150..4437341 | + | 192 | WP_000457836.1 | YebW family protein | - |
| LJF64_RS21340 () | 4437360..4438010 | - | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| LJF64_RS21345 () | 4438234..4438398 | - | 165 | WP_001134856.1 | membrane protein | - |
| LJF64_RS21350 () | 4438683..4439405 | - | 723 | WP_000182072.1 | SPI-1 type III secretion system guanine nucleotide exchange factor SopE2 | - |
| LJF64_RS21355 () | 4440089..4440484 | + | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| LJF64_RS21360 () | 4440814..4441290 | + | 477 | WP_000030934.1 | hypothetical protein | - |
| LJF64_RS21365 () | 4441678..4442097 | - | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| LJF64_RS21370 () | 4442467..4442736 | + | 270 | WP_001752421.1 | hypothetical protein | - |
| LJF64_RS21375 () | 4442902..4443042 | + | 141 | WP_001617922.1 | hypothetical protein | - |
| LJF64_RS21380 () | 4443188..4444382 | - | 1195 | Protein_4161 | IS256 family transposase | - |
| LJF64_RS21385 () | 4444452..4444874 | + | 423 | Protein_4162 | tyrosine-type recombinase/integrase | - |
| LJF64_RS21390 () | 4446178..4447092 | + | 915 | WP_001233446.1 | DMT family transporter | - |
| LJF64_RS21395 () | 4447225..4447383 | + | 159 | WP_000480735.1 | DUF5993 family protein | - |
| LJF64_RS21400 () | 4447393..4448007 | + | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| LJF64_RS21405 () | 4448334..4448566 | - | 233 | Protein_4166 | helix-turn-helix domain-containing protein | - |
| LJF64_RS21410 () | 4449188..4449289 | - | 102 | Protein_4167 | arsenic transporter | - |
| LJF64_RS21415 () | 4449280..4449460 | + | 181 | Protein_4168 | IS3 family transposase | - |
| LJF64_RS21420 () | 4449850..4450050 | + | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| LJF64_RS21425 () | 4450147..4450617 | - | 471 | Protein_4170 | tail fiber assembly protein | - |
| LJF64_RS21430 () | 4450627..4450971 | - | 345 | Protein_4171 | macro domain-containing protein | - |
| LJF64_RS21435 () | 4451186..4451446 | - | 261 | Protein_4172 | DUF1441 family protein | - |
| LJF64_RS21440 () | 4451501..4451689 | + | 189 | WP_001521334.1 | hypothetical protein | - |
| LJF64_RS21445 () | 4451754..4451921 | + | 168 | WP_000789530.1 | lytic enzyme | - |
| LJF64_RS21450 () | 4452178..4452711 | - | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| LJF64_RS21455 () | 4452765..4452956 | - | 192 | Protein_4176 | glycoside hydrolase family 19 protein | - |
| LJF64_RS21460 () | 4452945..4453406 | + | 462 | Protein_4177 | DNA breaking-rejoining protein | - |
| LJF64_RS21465 () | 4453670..4454593 | + | 924 | Protein_4178 | tyrosine-type recombinase/integrase | - |
| - | 4454722..4454867 | + | 146 | - | - | Antitoxin Detail |
| - | 4454724..4454827 | - | 104 | - | - | Toxin Detail |
| LJF64_RS21470 () | 4454967..4455320 | - | 354 | WP_000722368.1 | YebY family protein | - |
| LJF64_RS21475 () | 4455337..4456212 | - | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| LJF64_RS21480 () | 4456213..4456587 | - | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| LJF64_RS21485 () | 4456725..4456955 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| LJF64_RS21490 () | 4457063..4457719 | + | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| LJF64_RS21495 () | 4457743..4458441 | + | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| LJF64_RS21500 () | 4458476..4460527 | - | 2052 | WP_000936999.1 | oligopeptidase B | - |
| LJF64_RS21505 () | 4460740..4461399 | - | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| LJF64_RS21510 () | 4461493..4461846 | - | 354 | WP_001042119.1 | protein YebF | - |
| LJF64_RS21515 () | 4461914..4462204 | - | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| LJF64_RS21520 () | 4462335..4463513 | + | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| LJF64_RS21525 () | 4463613..4464254 | - | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| LJF64_RS21530 () | 4464292..4466103 | - | 1812 | WP_001069113.1 | phosphogluconate dehydratase | - |
| LJF64_RS21535 () | 4466338..4467813 | - | 1476 | WP_000301711.1 | glucose-6-phosphate dehydrogenase | - |
| LJF64_RS21540 () | 4468155..4469024 | + | 870 | WP_001056720.1 | MurR/RpiR family transcriptional regulator | - |
| LJF64_RS21545 () | 4469148..4470590 | + | 1443 | WP_000091156.1 | pyruvate kinase | - |
| LJF64_RS21550 () | 4470663..4471634 | - | 972 | WP_000448401.1 | lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase | - |
| LJF64_RS21555 () | 4471751..4473070 | - | 1320 | WP_001184028.1 | murein DD-endopeptidase MepM | - |
| LJF64_RS21560 () | 4473086..4474030 | - | 945 | WP_000939597.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| LJF64_RS21565 () | 4474109..4474864 | + | 756 | WP_000203014.1 | zinc ABC transporter ATP-binding protein ZnuC | - |
| LJF64_RS21570 () | 4474861..4475646 | + | 786 | WP_000571508.1 | zinc ABC transporter permease subunit ZnuB | - |
| LJF64_RS21575 () | 4475725..4476735 | - | 1011 | WP_000568508.1 | Holliday junction branch migration DNA helicase RuvB | - |
| LJF64_RS21580 () | 4476744..4477355 | - | 612 | WP_000580335.1 | Holliday junction branch migration protein RuvA | - |
| LJF64_RS21585 () | 4477775..4478670 | + | 896 | Protein_4202 | DUF4034 domain-containing protein | - |
| LJF64_RS21590 () | 4479297..4479896 | + | 600 | WP_000716748.1 | YebB family permuted papain-like enzyme | - |
| LJF64_RS21595 () | 4479898..4480419 | - | 522 | WP_000022509.1 | crossover junction endodeoxyribonuclease RuvC | - |
| LJF64_RS21600 () | 4480456..4481196 | - | 741 | WP_000907242.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| LJF64_RS21605 () | 4481226..4481678 | - | 453 | WP_000653693.1 | dihydroneopterin triphosphate diphosphatase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Prophage | TA25947 | NC_016810 | 1910986..1947632 | 0.006 |