MGE detailed information
MGE type: Prophage MGE length: 21707 bp
Accession: NZ_CP084899 Location: 1634347..1656053 Organism: Escherichia coli strain W3110-P Replicon: chromosome
Accession: NZ_CP084899 Location: 1634347..1656053 Organism: Escherichia coli strain W3110-P Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LHV60_RS07975 (1630862) | 1630862..1631608 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| LHV60_RS07980 (1631697) | 1631697..1632383 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| LHV60_RS07985 (1632560) | 1632560..1632763 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| LHV60_RS07990 (1632798) | 1632798..1634258 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| LHV60_RS07995 (1634347) | 1634347..1635714 | - | 1368 | Protein_1562 | MHS family MFS transporter | - |
| LHV60_RS08000 (1636235) | 1636235..1636348 | + | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| LHV60_RS08005 (1636417) | 1636417..1636650 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| LHV60_RS08010 (1636967) | 1636967..1637557 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| LHV60_RS08015 (1637655) | 1637655..1638230 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| LHV60_RS08020 (1638230) | 1638230..1639192 | - | 963 | WP_001027733.1 | phage tail protein | - |
| LHV60_RS08025 (1639143) | 1639143..1639712 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| LHV60_RS08030 (1640101) | 1640101..1640334 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| LHV60_RS08035 (1640392) | 1640392..1640802 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| LHV60_RS08040 (1640954) | 1640954..1641127 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| LHV60_RS08045 (1641299) | 1641299..1641454 | - | 156 | WP_001309517.1 | protein YnfN | - |
| LHV60_RS08050 (1641533) | 1641533..1641598 | - | 66 | WP_120795388.1 | small protein YnfR | - |
| LHV60_RS08055 (1641601) | 1641601..1641789 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| LHV60_RS08060 (1641800) | 1641800..1642012 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| LHV60_RS08065 (1642375) | 1642375..1642872 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| LHV60_RS08070 (1642869) | 1642869..1643402 | - | 534 | WP_001092971.1 | lysozyme | - |
| LHV60_RS08075 (1643399) | 1643399..1643710 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| LHV60_RS08080 (1643715) | 1643715..1643930 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| LHV60_RS08085 (1644150) | 1644150..1644320 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| LHV60_RS08090 (1644684) | 1644684..1644899 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| LHV60_RS08095 (1645200) | 1645200..1645412 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| LHV60_RS08100 (1645467) | 1645467..1645556 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| LHV60_RS08105 (1645834) | 1645834..1646586 | - | 753 | WP_001047135.1 | antitermination protein | - |
| LHV60_RS08110 (1646600) | 1646600..1647649 | - | 1050 | WP_001393597.1 | DUF968 domain-containing protein | - |
| LHV60_RS08115 (1647651) | 1647651..1647929 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| LHV60_RS08120 (1647996) | 1647996..1648247 | - | 252 | WP_000980994.1 | protein Rem | - |
| LHV60_RS08125 (1648464) | 1648464..1648619 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| LHV60_RS08130 (1648691) | 1648691..1648978 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| LHV60_RS08135 (1648978) | 1648978..1649217 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| LHV60_RS08140 (1649242) | 1649242..1649547 | + | 306 | WP_001326990.1 | protein YdfV | - |
| LHV60_RS08145 (1649750) | 1649750..1650082 | + | 333 | WP_001301033.1 | FlxA-like family protein | - |
| LHV60_RS08150 (1650519) | 1650519..1650668 | - | 150 | WP_011443592.1 | protein YdfW | - |
| LHV60_RS08155 (1650703) | 1650703..1650981 | - | 279 | Protein_1594 | hypothetical protein | - |
| LHV60_RS08160 (1650965) | 1650965..1651195 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| LHV60_RS08165 (1651279) | 1651279..1651686 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| LHV60_RS08170 (1651853) | 1651853..1652008 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| LHV60_RS22615 (1652010) | 1652010..1652138 | + | 129 | WP_000344964.1 | protein YdfB | - |
| LHV60_RS08175 (1652168) | 1652168..1652386 | + | 219 | WP_001171942.1 | protein YdfC | - |
| LHV60_RS08180 (1652954) | 1652954..1653142 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| LHV60_RS08185 (1653139) | 1653139..1653330 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| LHV60_RS08190 (1653423) | 1653423..1654190 | + | 768 | Protein_1602 | exonuclease | - |
| LHV60_RS08195 (1654187) | 1654187..1654882 | + | 696 | Protein_1603 | IS3 family transposase IS2 | Transposase |
| LHV60_RS08200 (1654896) | 1654896..1656053 | + | 1158 | Protein_1604 | Putative defective protein IntQ ; Integrase | Integrase |
| LHV60_RS08205 (1656241) | 1656241..1657260 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| LHV60_RS08210 (1657272) | 1657272..1658486 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| LHV60_RS08215 (1658692) | 1658692..1659018 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| LHV60_RS08220 (1659153) | 1659153..1659494 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| LHV60_RS08225 (1659529) | 1659529..1660089 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| LHV60_RS08230 (1660092) | 1660092..1660802 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.002 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0 |