MGE detailed information
MGE type: Prophage MGE length: 28934 bp
Accession: NZ_CP084899 Location: 1405619..1434552 Organism: Escherichia coli strain W3110-P Replicon: chromosome
Accession: NZ_CP084899 Location: 1405619..1434552 Organism: Escherichia coli strain W3110-P Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LHV60_RS06920 (1401125) | 1401125..1402651 | - | 1527 | WP_000062973.1 | p-aminobenzoyl-glutamate transporter | - |
| LHV60_RS06925 (1402688) | 1402688..1404133 | - | 1446 | WP_001156451.1 | p-aminobenzoyl-glutamate hydrolase subunit AbgB | - |
| LHV60_RS06930 (1404133) | 1404133..1405443 | - | 1311 | WP_000444929.1 | p-aminobenzoyl-glutamate hydrolase subunit AbgA | - |
| LHV60_RS06935 (1405619) | 1405619..1406527 | + | 909 | WP_000885458.1 | LysR family transcriptional regulator | - |
| LHV60_RS06940 (1406857) | 1406857..1407420 | + | 564 | WP_001046829.1 | DNA endonuclease SmrA | - |
| LHV60_RS06945 (1407441) | 1407441..1408673 | - | 1233 | WP_000628058.1 | diguanylate cyclase DgcM | - |
| LHV60_RS06950 (1408867) | 1408867..1408914 | + | 48 | WP_211180494.1 | protein YnaN | - |
| LHV60_RS06955 (1408928) | 1408928..1409911 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| LHV60_RS06960 (1410389) | 1410389..1411762 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| LHV60_RS06965 (1411891) | 1411891..1412826 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| LHV60_RS06970 (1412878) | 1412878..1414113 | - | 1236 | WP_000040852.1 | Putative defective protein IntQ ; Integrase | Integrase |
| LHV60_RS06975 (1414115) | 1414115..1414330 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| - (1414434) | 1414434..1414612 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (1414434) | 1414434..1414612 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (1414434) | 1414434..1414612 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (1414434) | 1414434..1414612 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| LHV60_RS06980 (1414409) | 1414409..1414618 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| LHV60_RS06985 (1414611) | 1414611..1414805 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| LHV60_RS06990 (1414862) | 1414862..1415671 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| LHV60_RS06995 (1415664) | 1415664..1418264 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| LHV60_RS07000 (1418366) | 1418366..1418641 | - | 276 | WP_000632297.1 | protein RacC | - |
| LHV60_RS07005 (1418716) | 1418716..1418886 | - | 171 | WP_001352098.1 | YdaE family protein | - |
| LHV60_RS07010 (1418886) | 1418886..1419107 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| LHV60_RS07015 (1419549) | 1419549..1420037 | + | 489 | WP_001312793.1 | superinfection exclusion B family protein | - |
| LHV60_RS07020 (1420034) | 1420034..1420189 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| LHV60_RS22600 (1420200) | 1420200..1420334 | - | 135 | WP_000233809.1 | phage protein | - |
| LHV60_RS07025 (1420643) | 1420643..1421119 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| LHV60_RS07030 (1421243) | 1421243..1421539 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| LHV60_RS07035 (1421562) | 1421562..1421984 | + | 423 | WP_000693797.1 | toxin YdaT family protein | - |
| LHV60_RS07040 (1421997) | 1421997..1422854 | + | 858 | WP_000899748.1 | YdaU family protein | - |
| LHV60_RS07045 (1422861) | 1422861..1423607 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| LHV60_RS07050 (1423630) | 1423630..1424082 | + | 453 | Protein_1372 | DUF1627 domain-containing protein | - |
| LHV60_RS22605 (1424278) | 1424278..1424463 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| LHV60_RS07060 (1424660) | 1424660..1426117 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| LHV60_RS07065 (1426255) | 1426255..1426518 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| LHV60_RS07070 (1426499) | 1426499..1426858 | + | 360 | WP_000091628.1 | protein YdaY | - |
| LHV60_RS07075 (1427332) | 1427332..1428264 | + | 933 | Protein_1377 | phage tail length tape measure family protein | - |
| LHV60_RS07080 (1428267) | 1428267..1428482 | + | 216 | Protein_1378 | Ail/Lom family outer membrane beta-barrel protein | - |
| LHV60_RS07085 (1428624) | 1428624..1429604 | - | 981 | WP_000019448.1 | IS5 family transposase ISKpn26 | Transposase |
| LHV60_RS07090 (1429674) | 1429674..1429862 | + | 189 | Protein_1380 | Ail/Lom family outer membrane beta-barrel protein | - |
| LHV60_RS07095 (1429927) | 1429927..1433289 | + | 3363 | WP_000279097.1 | prophage tail fiber N-terminal domain-containing protein | - |
| LHV60_RS07100 (1433289) | 1433289..1433864 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| LHV60_RS07105 (1433962) | 1433962..1434552 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| LHV60_RS07110 (1434869) | 1434869..1435102 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| LHV60_RS07115 (1435171) | 1435171..1435284 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| LHV60_RS07120 (1436063) | 1436063..1436497 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| LHV60_RS07125 (1436638) | 1436638..1437771 | - | 1134 | WP_000837921.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0.008 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0.008 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0.008 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0.008 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0.008 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0.008 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0.008 |