MGE detailed information
MGE type: Genomic_island MGE length: 21036 bp
Accession: NZ_CP084879 Location: 278131..299166 Organism: Shigella flexneri strain CMCC51574 Replicon: chromosome
Accession: NZ_CP084879 Location: 278131..299166 Organism: Shigella flexneri strain CMCC51574 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGV73_RS01275 (273243) | 273243..273578 | + | 336 | WP_000626187.1 | universal stress protein UspB | - |
| LGV73_RS01280 (273649) | 273649..275148 | - | 1500 | WP_000902779.1 | inorganic phosphate transporter PitA | - |
| LGV73_RS01285 (275380) | 275380..276579 | + | 1200 | WP_000439213.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| LGV73_RS01290 (277108) | 277108..277805 | + | 698 | WP_252988444.1 | IS1 family transposase | - |
| LGV73_RS01295 (277823) | 277823..278115 | - | 293 | Protein_256 | transposase | - |
| LGV73_RS01300 (278131) | 278131..279405 | + | 1275 | WP_005052544.1 | O-antigen ligase family protein | - |
| LGV73_RS01305 (279405) | 279405..280079 | + | 675 | WP_000245839.1 | helix-turn-helix transcriptional regulator | - |
| LGV73_RS01310 (280607) | 280607..281368 | + | 762 | WP_005090407.1 | hypothetical protein | VF |
| LGV73_RS01315 (281412) | 281412..282491 | + | 1080 | WP_005052551.1 | hypothetical protein | VF |
| LGV73_RS01325 (284066) | 284066..285214 | + | 1149 | WP_005104238.1 | hypothetical protein | VF |
| LGV73_RS01330 (285353) | 285353..285865 | + | 513 | WP_000751953.1 | hypothetical protein | - |
| LGV73_RS01335 (285972) | 285972..286733 | - | 762 | WP_011069549.1 | Transcriptional regulatory protein RcsB | VF |
| LGV73_RS01340 (286979) | 286979..287743 | + | 765 | WP_000442144.1 | winged helix-turn-helix domain-containing protein | - |
| LGV73_RS01345 (287736) | 287736..288212 | + | 477 | WP_000182502.1 | hypothetical protein | - |
| LGV73_RS01350 (288299) | 288299..289297 | - | 999 | Protein_267 | DUF2776 family protein | - |
| LGV73_RS01355 (289714) | 289714..291303 | + | 1590 | WP_000643692.1 | DUF4049 domain-containing protein | - |
| LGV73_RS01360 (291565) | 291565..293187 | + | 1623 | WP_005052620.1 | DUF4049 domain-containing protein | - |
| LGV73_RS01365 (293377) | 293377..293490 | + | 114 | WP_001296785.1 | protein YhiY | - |
| LGV73_RS01370 (293553) | 293553..294620 | + | 1068 | WP_000361470.1 | HlyD family secretion protein | - |
| LGV73_RS01375 (294617) | 294617..297352 | + | 2736 | WP_000149173.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| LGV73_RS01380 (297352) | 297352..298476 | + | 1125 | WP_001216257.1 | ABC transporter permease | - |
| LGV73_RS01385 (298535) | 298535..298810 | + | 276 | WP_001259384.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| LGV73_RS01390 (298807) | 298807..299166 | + | 360 | WP_000593555.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| LGV73_RS01395 (299286) | 299286..299687 | - | 402 | WP_001190069.1 | nickel-responsive transcriptional regulator NikR | - |
| LGV73_RS01400 (299693) | 299693..300499 | - | 807 | WP_000173660.1 | nickel import ATP-binding protein NikE | - |
| LGV73_RS01405 (300496) | 300496..301260 | - | 765 | WP_001136248.1 | nickel import ATP-binding protein NikD | - |
| LGV73_RS01410 (301260) | 301260..302093 | - | 834 | WP_001008974.1 | nickel ABC transporter permease subunit NikC | - |
| LGV73_RS01415 (302090) | 302090..303034 | - | 945 | WP_000947076.1 | nickel ABC transporter permease subunit NikB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Genomic island | TA120378 | NZ_CP037923 | 4222298..4243335 | 0.001 |