MGE detailed information
MGE type: Prophage MGE length: 13609 bp
Accession: NZ_CP084641 Location: 3273407..3287015 Organism: Yersinia ruckeri strain 17Y0163 Replicon: chromosome
Accession: NZ_CP084641 Location: 3273407..3287015 Organism: Yersinia ruckeri strain 17Y0163 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGL88_RS14995 (LGL88_15030) | 3269635..3269808 | - | 174 | Protein_2909 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| LGL88_RS15000 (LGL88_15035) | 3269834..3269959 | - | 126 | Protein_2910 | antirestriction protein | - |
| LGL88_RS15005 (LGL88_15040) | 3270339..3271289 | - | 951 | WP_234055605.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| LGL88_RS15010 (LGL88_15045) | 3271282..3271677 | - | 396 | WP_038245317.1 | DUF6088 family protein | - |
| LGL88_RS15015 (LGL88_15050) | 3271752..3271982 | - | 231 | Protein_2913 | DUF4942 domain-containing protein | - |
| LGL88_RS15020 (LGL88_15055) | 3272132..3272260 | + | 129 | Protein_2914 | helix-turn-helix domain-containing protein | - |
| LGL88_RS15025 (LGL88_15060) | 3272274..3272379 | + | 106 | Protein_2915 | transposase | - |
| LGL88_RS15030 (LGL88_15065) | 3272408..3272704 | - | 297 | Protein_2916 | integrase core domain-containing protein | - |
| LGL88_RS15035 (LGL88_15070) | 3272703..3273101 | + | 399 | Protein_2917 | integrase core domain-containing protein | - |
| LGL88_RS15040 (LGL88_15075) | 3273120..3273386 | - | 267 | Protein_2918 | hypothetical protein | - |
| LGL88_RS15045 (LGL88_15080) | 3273407..3274474 | - | 1068 | WP_096823272.1 | macro domain-containing protein | Antitoxin Detail |
| LGL88_RS15050 (LGL88_15085) | 3274471..3275127 | - | 657 | WP_096823271.1 | DUF4433 domain-containing protein | Toxin Detail |
| LGL88_RS15055 (LGL88_15090) | 3275130..3275705 | - | 576 | WP_234055606.1 | DarT ssDNA thymidine ADP-ribosyltransferase family protein | - |
| LGL88_RS15060 (LGL88_15095) | 3275829..3276218 | - | 390 | WP_234055607.1 | restriction endonuclease subunit S | - |
| LGL88_RS15065 (LGL88_15100) | 3276482..3276772 | - | 291 | WP_038275268.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LGL88_RS15070 (LGL88_15105) | 3276762..3277016 | - | 255 | WP_005175264.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| LGL88_RS15080 (LGL88_15115) | 3278692..3279114 | - | 423 | WP_230675767.1 | very short patch repair endonuclease | - |
| LGL88_RS15085 (LGL88_15120) | 3279365..3280801 | + | 1437 | WP_049689835.1 | DNA cytosine methyltransferase | - |
| LGL88_RS15090 (LGL88_15125) | 3280894..3282129 | + | 1236 | WP_038275245.1 | type II restriction endonuclease | - |
| LGL88_RS15095 (LGL88_15130) | 3282192..3284282 | + | 2091 | WP_038275243.1 | ATP-binding domain-containing protein | - |
| LGL88_RS15100 (LGL88_15135) | 3284288..3284962 | + | 675 | WP_234055608.1 | DUF2290 domain-containing protein | - |
| LGL88_RS15105 (LGL88_15140) | 3285539..3285735 | - | 197 | Protein_2931 | Prophage integrase IntS ; Integrase | Integrase |
| LGL88_RS15110 (LGL88_15145) | 3285759..3287015 | - | 1257 | WP_234055609.1 | Prophage integrase IntA ; Integrase | Integrase |
| LGL88_RS15120 (LGL88_15155) | 3287404..3288474 | - | 1071 | WP_038241732.1 | LPS export ABC transporter permease LptG | - |
| LGL88_RS15125 (LGL88_15160) | 3288474..3289568 | - | 1095 | WP_004720454.1 | LPS export ABC transporter permease LptF | - |
| LGL88_RS15130 (LGL88_15165) | 3289848..3291359 | + | 1512 | WP_004720452.1 | leucyl aminopeptidase | - |
| LGL88_RS15135 (LGL88_15170) | 3291482..3291931 | + | 450 | WP_004720451.1 | DNA polymerase III subunit chi | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|