MGE detailed information
MGE type: Prophage MGE length: 80806 bp
Accession: NZ_CP084398 Location: 868334..949139 Organism: Sphingobium sp. CFD-1 Replicon: chromosome
Accession: NZ_CP084398 Location: 868334..949139 Organism: Sphingobium sp. CFD-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDB26_RS04290 | 866802..868073 | - | 1272 | WP_257540560.1 | hypothetical protein | - |
| LDB26_RS04300 | 868334..869689 | - | 1356 | WP_257540562.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| LDB26_RS04305 | 869844..870449 | - | 606 | WP_257540564.1 | AlpA family phage regulatory protein | - |
| LDB26_RS04310 | 870446..871189 | - | 744 | WP_257540566.1 | Rha family transcriptional regulator | - |
| LDB26_RS04315 | 871186..871626 | - | 441 | WP_257540568.1 | hypothetical protein | - |
| LDB26_RS04320 | 871623..872021 | - | 399 | WP_257540570.1 | hypothetical protein | - |
| LDB26_RS04325 | 872018..872254 | - | 237 | WP_257540573.1 | hypothetical protein | - |
| LDB26_RS04330 | 872251..872544 | - | 294 | WP_257540575.1 | hypothetical protein | - |
| LDB26_RS04335 | 872541..872747 | - | 207 | WP_257540577.1 | hypothetical protein | - |
| LDB26_RS04340 | 872744..874093 | - | 1350 | WP_257540579.1 | hypothetical protein | - |
| LDB26_RS04345 | 874090..874851 | - | 762 | WP_257540581.1 | hypothetical protein | - |
| LDB26_RS04350 | 874851..875117 | - | 267 | WP_257540583.1 | hypothetical protein | - |
| LDB26_RS04355 | 875114..875542 | - | 429 | WP_257540586.1 | hypothetical protein | - |
| LDB26_RS04360 | 875544..875726 | - | 183 | WP_257540588.1 | hypothetical protein | - |
| LDB26_RS04365 | 875741..876058 | - | 318 | WP_257540590.1 | hypothetical protein | - |
| LDB26_RS04370 | 876055..876297 | - | 243 | WP_257540592.1 | hypothetical protein | - |
| LDB26_RS04375 | 876287..876661 | - | 375 | WP_257540594.1 | hypothetical protein | - |
| LDB26_RS04380 | 876658..877221 | - | 564 | WP_257540598.1 | hypothetical protein | - |
| LDB26_RS04385 | 877223..877714 | - | 492 | WP_257540601.1 | hypothetical protein | - |
| LDB26_RS04390 | 877887..878522 | - | 636 | WP_257540603.1 | S24 family peptidase | - |
| LDB26_RS04395 | 878871..879575 | + | 705 | WP_257540605.1 | hypothetical protein | - |
| LDB26_RS04400 | 879572..880567 | + | 996 | WP_257540607.1 | CHC2 zinc finger domain-containing protein | - |
| LDB26_RS04405 | 880564..881982 | + | 1419 | WP_257540612.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| LDB26_RS04410 | 882015..882773 | + | 759 | WP_257540614.1 | hypothetical protein | - |
| LDB26_RS04415 | 882770..883039 | + | 270 | WP_257540616.1 | hypothetical protein | - |
| LDB26_RS04420 | 883036..883371 | + | 336 | WP_257540618.1 | hypothetical protein | - |
| LDB26_RS04425 | 883368..883541 | + | 174 | WP_257540620.1 | hypothetical protein | - |
| LDB26_RS04430 | 883538..884170 | + | 633 | WP_257540623.1 | hypothetical protein | - |
| LDB26_RS04435 | 884295..885131 | + | 837 | WP_257540625.1 | TIGR04255 family protein | - |
| LDB26_RS04440 | 885143..885745 | + | 603 | WP_257540627.1 | hypothetical protein | - |
| LDB26_RS04445 | 885758..886237 | + | 480 | WP_257540629.1 | hypothetical protein | - |
| LDB26_RS04450 | 887091..887378 | - | 288 | WP_257541975.1 | PilZ domain-containing protein | - |
| LDB26_RS04455 | 887664..889034 | + | 1371 | WP_013039223.1 | IS1380 family transposase ISSp1 | Transposase |
| LDB26_RS04460 | 889280..889555 | + | 276 | WP_257540631.1 | HNH endonuclease signature motif containing protein | - |
| LDB26_RS04465 | 889640..890089 | + | 450 | WP_257540633.1 | hypothetical protein | - |
| LDB26_RS04470 | 890224..891729 | + | 1506 | WP_257540635.1 | terminase large subunit | - |
| LDB26_RS04475 | 891726..892973 | + | 1248 | WP_257540637.1 | phage portal protein | - |
| LDB26_RS04480 | 892957..893538 | + | 582 | WP_257540640.1 | HK97 family phage prohead protease | - |
| LDB26_RS04485 | 893608..894870 | + | 1263 | WP_257540642.1 | phage major capsid protein | - |
| LDB26_RS04490 | 894945..895124 | + | 180 | WP_257540644.1 | hypothetical protein | - |
| LDB26_RS04495 | 895124..895696 | + | 573 | WP_257540646.1 | head-tail connector protein | - |
| LDB26_RS04500 | 895690..896040 | + | 351 | WP_257540649.1 | phage head closure protein | - |
| LDB26_RS04505 | 896037..896597 | + | 561 | WP_257540650.1 | HK97 gp10 family phage protein | - |
| LDB26_RS04510 | 896597..897004 | + | 408 | WP_257540653.1 | DUF3168 domain-containing protein | - |
| LDB26_RS04515 | 897006..897173 | + | 168 | WP_257540655.1 | hypothetical protein | - |
| LDB26_RS04520 | 897242..897709 | + | 468 | WP_257540657.1 | hypothetical protein | - |
| LDB26_RS04525 | 897787..898239 | + | 453 | WP_257540659.1 | hypothetical protein | - |
| LDB26_RS04530 | 898299..898649 | + | 351 | WP_257540662.1 | hypothetical protein | - |
| LDB26_RS04535 | 898744..899310 | + | 567 | WP_257540664.1 | NUMOD4 motif-containing HNH endonuclease | - |
| LDB26_RS04540 | 899336..899617 | - | 282 | WP_257540666.1 | putative addiction module antidote protein | Antitoxin Detail |
| LDB26_RS04545 | 899617..899907 | - | 291 | WP_257540668.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LDB26_RS04550 | 900829..904245 | + | 3417 | WP_257540671.1 | hypothetical protein | - |
| LDB26_RS04555 | 904242..905282 | + | 1041 | WP_257540673.1 | hypothetical protein | - |
| LDB26_RS04560 | 905282..906082 | + | 801 | WP_257540676.1 | hypothetical protein | - |
| LDB26_RS04565 | 906082..906915 | + | 834 | WP_257542234.1 | hypothetical protein | - |
| LDB26_RS04570 | 906918..907274 | + | 357 | WP_257540678.1 | hypothetical protein | - |
| LDB26_RS04575 | 907319..907510 | + | 192 | WP_257540681.1 | hypothetical protein | - |
| LDB26_RS04580 | 907517..907762 | + | 246 | WP_257540683.1 | glycosyl hydrolase 108 family protein | - |
| LDB26_RS04585 | 907795..907995 | + | 201 | WP_257540685.1 | hypothetical protein | - |
| LDB26_RS04590 | 908019..908453 | + | 435 | WP_257540687.1 | hypothetical protein | - |
| LDB26_RS04595 | 908519..909205 | + | 687 | WP_257540689.1 | N-acetylmuramidase family protein | - |
| LDB26_RS04600 | 909202..909390 | + | 189 | WP_257540692.1 | hypothetical protein | - |
| LDB26_RS04605 | 909383..909568 | + | 186 | WP_257540694.1 | hypothetical protein | - |
| LDB26_RS04610 | 909669..910211 | + | 543 | WP_257540697.1 | hypothetical protein | - |
| LDB26_RS04615 | 910204..910863 | - | 660 | WP_257540699.1 | hypothetical protein | - |
| LDB26_RS04620 | 910928..911137 | - | 210 | WP_257540701.1 | hypothetical protein | - |
| LDB26_RS04630 | 911677..912036 | - | 360 | WP_257540703.1 | hypothetical protein | - |
| LDB26_RS04635 | 912054..912422 | - | 369 | WP_257540705.1 | PH domain-containing protein | - |
| LDB26_RS04640 | 912905..913432 | + | 528 | WP_257540707.1 | DUF4352 domain-containing protein | - |
| LDB26_RS04645 | 913441..913680 | + | 240 | WP_257540710.1 | hypothetical protein | - |
| LDB26_RS04650 | 913887..914231 | + | 345 | WP_257540713.1 | hypothetical protein | - |
| LDB26_RS04655 | 914302..914700 | + | 399 | WP_257540715.1 | hypothetical protein | - |
| LDB26_RS04660 | 915065..916405 | + | 1341 | WP_257540717.1 | virulence-associated E family protein | - |
| LDB26_RS04665 | 916672..917847 | + | 1176 | WP_257540719.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| LDB26_RS04670 | 917932..918237 | + | 306 | WP_257540721.1 | hypothetical protein | - |
| LDB26_RS04675 | 918307..918489 | - | 183 | WP_257540724.1 | hypothetical protein | - |
| LDB26_RS04680 | 918690..918881 | + | 192 | WP_257540726.1 | hypothetical protein | - |
| LDB26_RS04685 | 919213..919575 | + | 363 | WP_257540728.1 | hypothetical protein | - |
| LDB26_RS04690 | 919585..920184 | + | 600 | WP_257540730.1 | SOS response-associated peptidase | - |
| LDB26_RS04695 | 920292..920705 | + | 414 | WP_257541977.1 | thermonuclease family protein | - |
| LDB26_RS04700 | 920724..920897 | - | 174 | WP_257540732.1 | hypothetical protein | - |
| LDB26_RS04705 | 920894..921094 | - | 201 | WP_257540734.1 | DUF5818 domain-containing protein | - |
| LDB26_RS04710 | 921185..921805 | - | 621 | WP_257540737.1 | hypothetical protein | - |
| LDB26_RS04715 | 922073..922399 | + | 327 | WP_257541979.1 | excalibur calcium-binding domain-containing protein | - |
| LDB26_RS04720 | 922530..923984 | + | 1455 | WP_257540739.1 | hypothetical protein | - |
| LDB26_RS04725 | 923984..924781 | + | 798 | WP_257540741.1 | hypothetical protein | - |
| LDB26_RS04730 | 924778..926142 | + | 1365 | WP_257540744.1 | hypothetical protein | - |
| LDB26_RS04735 | 926146..926820 | + | 675 | WP_257540746.1 | hypothetical protein | - |
| LDB26_RS04740 | 926817..927251 | + | 435 | WP_257540748.1 | hypothetical protein | - |
| LDB26_RS04745 | 927321..927854 | + | 534 | WP_257540750.1 | hypothetical protein | - |
| LDB26_RS04750 | 928039..929721 | - | 1683 | WP_082635171.1 | hypothetical protein ; Integrase | Integrase |
| LDB26_RS04755 | 929761..930270 | - | 510 | WP_062064403.1 | GNAT family N-acetyltransferase | - |
| LDB26_RS04760 | 930274..930564 | - | 291 | WP_062064405.1 | DUF1778 domain-containing protein | - |
| LDB26_RS04765 | 930681..930926 | - | 246 | WP_139181290.1 | hypothetical protein | - |
| LDB26_RS04770 | 931125..931364 | + | 240 | WP_062068658.1 | DUF6429 family protein | - |
| LDB26_RS04775 | 931712..932029 | + | 318 | WP_062064407.1 | DUF736 domain-containing protein | - |
| LDB26_RS04780 | 932197..932589 | + | 393 | WP_062064409.1 | hypothetical protein | - |
| LDB26_RS04785 | 932870..933541 | + | 672 | WP_062064411.1 | DNA methyltransferase | - |
| LDB26_RS04790 | 933578..933802 | + | 225 | WP_062064413.1 | hypothetical protein | - |
| LDB26_RS04795 | 934012..934239 | - | 228 | WP_062064415.1 | helix-turn-helix transcriptional regulator | - |
| LDB26_RS04800 | 934410..934676 | + | 267 | WP_062064418.1 | hypothetical protein | - |
| LDB26_RS04805 | 934820..935020 | + | 201 | WP_139181289.1 | DUF6499 domain-containing protein | - |
| LDB26_RS04810 | 935067..935582 | + | 516 | WP_231746246.1 | DUF2285 domain-containing protein | - |
| LDB26_RS04815 | 935713..935979 | + | 267 | WP_062064420.1 | helix-turn-helix domain-containing protein | - |
| LDB26_RS04820 | 935976..936860 | + | 885 | WP_062064422.1 | replication initiator protein A | - |
| LDB26_RS04825 | 937165..938313 | + | 1149 | WP_062064424.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| LDB26_RS04830 | 938229..938894 | - | 666 | WP_257540752.1 | hypothetical protein | - |
| LDB26_RS04835 | 938893..939675 | + | 783 | WP_257540754.1 | hypothetical protein | - |
| LDB26_RS04840 | 939908..940393 | + | 486 | WP_062068669.1 | DUF2840 domain-containing protein | - |
| LDB26_RS04845 | 940390..940968 | + | 579 | WP_062064427.1 | S26 family signal peptidase | - |
| LDB26_RS04850 | 940949..941296 | + | 348 | WP_062064429.1 | DUF736 domain-containing protein | - |
| LDB26_RS04855 | 941332..941676 | + | 345 | WP_062064431.1 | DUF736 domain-containing protein | - |
| LDB26_RS04860 | 941681..942388 | + | 708 | WP_062064433.1 | lytic transglycosylase domain-containing protein | - |
| LDB26_RS04865 | 942385..942966 | + | 582 | WP_062064435.1 | hypothetical protein | - |
| LDB26_RS04870 | 943205..944980 | + | 1776 | WP_062064436.1 | DUF3363 domain-containing protein | - |
| LDB26_RS04875 | 944995..945510 | - | 516 | WP_062064438.1 | GNAT family N-acetyltransferase | Toxin Detail |
| LDB26_RS04880 | 945526..945834 | - | 309 | WP_062064445.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| LDB26_RS04885 | 945917..947902 | + | 1986 | WP_062064447.1 | hypothetical protein | VF |
| LDB26_RS04890 | 947911..948333 | + | 423 | WP_062064448.1 | CopG family transcriptional regulator | - |
| LDB26_RS04895 | 948447..948704 | + | 258 | WP_257541981.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| LDB26_RS04900 | 948774..949139 | - | 366 | WP_062064450.1 | hypothetical protein | - |
| LDB26_RS04905 | 949392..950378 | + | 987 | WP_062064452.1 | P-type conjugative transfer ATPase TrbB | - |
| LDB26_RS04910 | 950375..950707 | + | 333 | WP_062064454.1 | TrbC/VirB2 family protein | - |
| LDB26_RS04915 | 950707..950976 | + | 270 | WP_062064456.1 | VirB3 family type IV secretion system protein | - |
| LDB26_RS04920 | 950973..953444 | + | 2472 | WP_062064457.1 | conjugal transfer protein TrbE | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|