MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 69304 bp
Accession: NZ_CP084398 Location: 2858212..2927515 Organism: Sphingobium sp. CFD-1 Replicon: chromosome
Accession: NZ_CP084398 Location: 2858212..2927515 Organism: Sphingobium sp. CFD-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDB26_RS14395 | 2854759..2854986 | - | 228 | WP_062068107.1 | hypothetical protein | - |
| LDB26_RS14400 | 2854976..2855191 | - | 216 | WP_257538914.1 | hypothetical protein | - |
| LDB26_RS14405 | 2855305..2856198 | - | 894 | WP_257538916.1 | N-formylglutamate amidohydrolase | - |
| LDB26_RS14410 | 2856338..2856715 | + | 378 | WP_257538918.1 | response regulator | - |
| LDB26_RS14415 | 2856721..2858052 | - | 1332 | WP_257538921.1 | dicarboxylate/amino acid:cation symporter | - |
| LDB26_RS14425 | 2858764..2859801 | + | 1038 | WP_257538923.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| LDB26_RS14430 | 2859951..2860148 | + | 198 | WP_013041066.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| LDB26_RS14435 | 2860145..2860516 | + | 372 | WP_013041067.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LDB26_RS14440 | 2860881..2861294 | - | 414 | WP_257538924.1 | IS5 family transposase ISPko5 | Transposase |
| LDB26_RS14445 | 2861800..2863653 | - | 1854 | WP_257538925.1 | HipA domain-containing protein | - |
| LDB26_RS14450 | 2863843..2864998 | - | 1156 | Protein_2842 | IS3 family transposase ISSsp2 | Transposase |
| LDB26_RS14455 | 2865423..2865809 | - | 387 | WP_257538926.1 | type II toxin-antitoxin system VapC family toxin | - |
| LDB26_RS14460 | 2865806..2866051 | - | 246 | WP_257538927.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| LDB26_RS14465 | 2866357..2866488 | + | 132 | WP_257538928.1 | hypothetical protein | - |
| LDB26_RS14470 | 2866481..2866726 | + | 246 | WP_257538929.1 | hypothetical protein | - |
| LDB26_RS14475 | 2866909..2867136 | - | 228 | WP_257538930.1 | DUF2274 domain-containing protein | - |
| LDB26_RS14480 | 2867146..2868408 | - | 1263 | WP_257538931.1 | hypothetical protein | VF |
| LDB26_RS14485 | 2868405..2869262 | - | 858 | WP_257538932.1 | P-type conjugative transfer protein TrbG | - |
| LDB26_RS14490 | 2869259..2870038 | - | 780 | WP_257538933.1 | conjugal transfer protein TrbF | - |
| LDB26_RS14495 | 2870040..2871335 | - | 1296 | WP_257538935.1 | P-type conjugative transfer protein TrbL | - |
| LDB26_RS14500 | 2871462..2872211 | - | 750 | WP_257538937.1 | P-type conjugative transfer protein TrbJ | - |
| LDB26_RS14505 | 2872208..2874664 | - | 2457 | WP_257538939.1 | conjugal transfer protein TrbE | - |
| LDB26_RS14510 | 2874658..2874918 | - | 261 | WP_257538941.1 | VirB3 family type IV secretion system protein | - |
| LDB26_RS14515 | 2874915..2875202 | - | 288 | WP_013041095.1 | TrbC/VirB2 family protein | - |
| LDB26_RS14520 | 2875259..2876281 | - | 1023 | WP_257538943.1 | hypothetical protein | VF |
| LDB26_RS14525 | 2876278..2876694 | - | 417 | WP_257538945.1 | CopG family transcriptional regulator | - |
| LDB26_RS14530 | 2876691..2878712 | - | 2022 | WP_257538959.1 | hypothetical protein | VF |
| LDB26_RS14535 | 2878858..2879778 | - | 921 | WP_257538960.1 | HEPN domain-containing protein | - |
| LDB26_RS14540 | 2879928..2880197 | + | 270 | WP_257538961.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| LDB26_RS14545 | 2880194..2880487 | + | 294 | WP_257538963.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LDB26_RS14550 | 2880583..2882595 | - | 2013 | WP_257538965.1 | relaxase/mobilization nuclease RlxS | - |
| LDB26_RS14555 | 2882889..2883095 | + | 207 | WP_257538966.1 | hypothetical protein | - |
| LDB26_RS14560 | 2883146..2883445 | - | 300 | WP_257538967.1 | hypothetical protein | - |
| LDB26_RS14565 | 2883760..2884449 | - | 690 | WP_257538968.1 | hypothetical protein | VF |
| LDB26_RS14570 | 2884556..2885191 | - | 636 | WP_257538969.1 | lytic transglycosylase domain-containing protein | - |
| LDB26_RS14575 | 2885179..2885751 | - | 573 | WP_257538970.1 | signal peptidase I | - |
| LDB26_RS14580 | 2885748..2886005 | - | 258 | WP_257538971.1 | helix-turn-helix domain-containing protein | - |
| LDB26_RS14585 | 2886183..2886503 | - | 321 | WP_257538972.1 | DUF736 domain-containing protein | - |
| LDB26_RS14590 | 2887336..2887542 | + | 207 | WP_257538973.1 | YqaE/Pmp3 family membrane protein | - |
| LDB26_RS14595 | 2887664..2887873 | - | 210 | WP_257538974.1 | hypothetical protein | - |
| LDB26_RS14600 | 2888044..2889918 | - | 1875 | WP_257538975.1 | ParB/RepB/Spo0J family partition protein | - |
| LDB26_RS14605 | 2890037..2890438 | - | 402 | WP_257538977.1 | DUF2958 domain-containing protein | - |
| LDB26_RS14610 | 2890419..2891492 | - | 1074 | WP_257538979.1 | zincin-like metallopeptidase domain-containing protein | - |
| LDB26_RS14615 | 2892216..2892629 | - | 414 | WP_257538980.1 | DUF2285 domain-containing protein | - |
| LDB26_RS14620 | 2893241..2894008 | + | 768 | WP_257538981.1 | LuxR family transcriptional regulator | - |
| LDB26_RS14625 | 2894067..2894666 | + | 600 | WP_257538982.1 | acyl-homoserine-lactone synthase | - |
| LDB26_RS14630 | 2894683..2895549 | + | 867 | WP_257538983.1 | phytanoyl-CoA dioxygenase family protein | - |
| LDB26_RS14635 | 2895556..2896161 | + | 606 | WP_257538984.1 | GntR family transcriptional regulator | - |
| LDB26_RS14640 | 2896327..2896446 | + | 120 | WP_257538985.1 | benenodin family lasso peptide | - |
| LDB26_RS14645 | 2896501..2897157 | + | 657 | WP_257538986.1 | lasso peptide biosynthesis B2 protein | - |
| LDB26_RS14650 | 2897157..2898905 | + | 1749 | WP_257538987.1 | asparagine synthetase B family protein | - |
| LDB26_RS14655 | 2898902..2901013 | - | 2112 | WP_257538988.1 | Atxe2 family lasso peptide isopeptidase | - |
| LDB26_RS14660 | 2901019..2903583 | - | 2565 | WP_257538989.1 | hypothetical protein | VF |
| LDB26_RS14665 | 2903681..2904673 | - | 993 | WP_257538990.1 | FecR domain-containing protein | - |
| LDB26_RS14670 | 2904666..2905244 | - | 579 | WP_257542131.1 | sigma-70 family RNA polymerase sigma factor | - |
| LDB26_RS14675 | 2906096..2907133 | + | 1038 | WP_257538991.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| LDB26_RS14680 | 2907161..2908060 | - | 900 | WP_257538992.1 | Bifunctional protein GlmU | VF |
| LDB26_RS14685 | 2908195..2909244 | - | 1050 | WP_257538993.1 | hypothetical protein | - |
| LDB26_RS14690 | 2909356..2911191 | + | 1836 | WP_257538994.1 | glycosyltransferase | - |
| LDB26_RS14695 | 2911235..2912440 | - | 1206 | WP_257538995.1 | hypothetical protein | VF |
| LDB26_RS14700 | 2912528..2912842 | - | 315 | WP_257538996.1 | hypothetical protein | - |
| LDB26_RS14705 | 2912929..2914287 | + | 1359 | WP_197672717.1 | transposase | - |
| LDB26_RS14710 | 2914256..2915842 | - | 1587 | WP_257538997.1 | HAD-IIIC family phosphatase | - |
| LDB26_RS14715 | 2915889..2916725 | - | 837 | WP_257542133.1 | hypothetical protein | VF |
| LDB26_RS14720 | 2916771..2917415 | - | 645 | Protein_2896 | hypothetical protein | VF |
| LDB26_RS14725 | 2917412..2918203 | - | 792 | WP_257538998.1 | hypothetical protein | VF |
| LDB26_RS14730 | 2918206..2919297 | - | 1092 | WP_257538999.1 | hypothetical protein | VF |
| LDB26_RS14735 | 2919456..2921177 | - | 1722 | WP_257539000.1 | glycosyltransferase | - |
| LDB26_RS14740 | 2921253..2922611 | - | 1359 | WP_257539001.1 | transposase | - |
| LDB26_RS14745 | 2922657..2922863 | - | 207 | WP_257539002.1 | hypothetical protein | - |
| LDB26_RS14750 | 2922915..2923988 | - | 1074 | Protein_2902 | hypothetical protein | VF |
| LDB26_RS14755 | 2924688..2925374 | + | 687 | WP_257539003.1 | hypothetical protein | - |
| LDB26_RS14760 | 2925367..2926218 | + | 852 | WP_257539004.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| LDB26_RS14765 | 2926220..2926540 | + | 321 | WP_257539005.1 | hypothetical protein | - |
| LDB26_RS14770 | 2926798..2927103 | + | 306 | WP_257539006.1 | hypothetical protein | - |
| LDB26_RS14775 | 2927379..2927567 | + | 189 | WP_257539007.1 | hypothetical protein | - |
| LDB26_RS14780 | 2927692..2929809 | + | 2118 | WP_257539010.1 | TonB-dependent receptor | - |
| LDB26_RS14785 | 2929926..2931041 | + | 1116 | WP_257539012.1 | DUF47 family protein | - |
| LDB26_RS14790 | 2931069..2932070 | + | 1002 | WP_257539013.1 | inorganic phosphate transporter | - |
| LDB26_RS14795 | 2932129..2932299 | - | 171 | WP_257539014.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|