MGE detailed information
MGE type: Conjugative plasmid MGE length: 76741 bp
Accession: NZ_CP084213 Location: 1..76741 Organism: Pseudomonas amygdali strain 35-1 Replicon: plasmid p1
Accession: NZ_CP084213 Location: 1..76741 Organism: Pseudomonas amygdali strain 35-1 Replicon: plasmid p1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCH33_RS28610 (LCH33_005696) | 1..558 | + | 558 | WP_051555726.1 | helix-turn-helix domain-containing protein | - |
| LCH33_RS28615 (LCH33_005697) | 587..877 | + | 291 | WP_061305024.1 | hypothetical protein | - |
| LCH33_RS28620 (LCH33_005698) | 870..1415 | + | 546 | WP_061305026.1 | hypothetical protein | - |
| LCH33_RS28625 (LCH33_005699) | 1555..2826 | + | 1272 | WP_102886347.1 | DUF1173 family protein | - |
| LCH33_RS28630 (LCH33_005700) | 2828..3616 | + | 789 | WP_180988334.1 | hypothetical protein | - |
| LCH33_RS28635 (LCH33_005701) | 3593..4780 | - | 1188 | WP_102886348.1 | Y-family DNA polymerase | - |
| LCH33_RS28640 (LCH33_005702) | 4933..6438 | + | 1506 | WP_100226550.1 | IS21 family transposase ISGur15 | Transposase |
| LCH33_RS28645 (LCH33_005703) | 6428..7171 | + | 744 | WP_029240427.1 | IS21 family transposase ISAisp6 | Transposase |
| LCH33_RS28650 (LCH33_005704) | 7227..7652 | - | 426 | Protein_8 | IS110 family transposase ISAzvi4 | Transposase |
| LCH33_RS28655 (LCH33_005705) | 7726..8229 | + | 504 | Protein_9 | IS5 family transposase ISPs1 | Transposase |
| LCH33_RS28660 (LCH33_005706) | 8250..8471 | - | 222 | WP_061305035.1 | hypothetical protein | - |
| LCH33_RS28665 (LCH33_005707) | 8491..8790 | - | 300 | WP_028692295.1 | putative addiction module antidote protein | Antitoxin Detail |
| LCH33_RS28670 (LCH33_005708) | 8787..9089 | - | 303 | WP_028692294.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LCH33_RS28675 (LCH33_005709) | 9291..9533 | + | 243 | WP_028692289.1 | hypothetical protein | - |
| LCH33_RS28680 (LCH33_005710) | 9585..11267 | + | 1683 | WP_102886349.1 | DNA cytosine methyltransferase | - |
| LCH33_RS28685 (LCH33_005711) | 11354..11575 | + | 222 | WP_028692287.1 | hypothetical protein | - |
| LCH33_RS28690 (LCH33_005712) | 11579..12019 | + | 441 | WP_102886350.1 | hypothetical protein | - |
| LCH33_RS28695 (LCH33_005713) | 12031..12294 | + | 264 | WP_061305040.1 | hypothetical protein | - |
| LCH33_RS28700 (LCH33_005714) | 12962..13357 | + | 396 | WP_102886351.1 | hypothetical protein | - |
| LCH33_RS28705 (LCH33_005715) | 13379..13939 | + | 561 | WP_180988335.1 | single-stranded DNA-binding protein | - |
| LCH33_RS28710 (LCH33_005716) | 14130..14957 | + | 828 | WP_102886353.1 | DUF932 domain-containing protein | - |
| LCH33_RS28715 (LCH33_005717) | 15016..15438 | + | 423 | WP_102886354.1 | hypothetical protein | - |
| LCH33_RS28720 (LCH33_005718) | 15471..15776 | + | 306 | WP_225231715.1 | TrfB-related DNA-binding protein | - |
| LCH33_RS28725 (LCH33_005719) | 15798..16082 | + | 285 | WP_102886355.1 | hypothetical protein | - |
| LCH33_RS28730 (LCH33_005720) | 16195..16797 | + | 603 | WP_102886356.1 | hypothetical protein | - |
| LCH33_RS28735 (LCH33_005721) | 17258..17485 | + | 228 | WP_005730594.1 | hypothetical protein | Antitoxin Detail |
| LCH33_RS28740 (LCH33_005722) | 17469..17735 | + | 267 | WP_005730593.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LCH33_RS28745 (LCH33_005723) | 17858..19135 | - | 1278 | WP_225231716.1 | LLM class flavin-dependent oxidoreductase | - |
| LCH33_RS28750 (LCH33_005724) | 19169..19933 | - | 765 | WP_102886303.1 | Aliphatic sulfonates import ATP-binding protein SsuB | VF |
| LCH33_RS28755 (LCH33_005725) | 19958..20746 | - | 789 | WP_102886304.1 | ABC transporter permease | - |
| LCH33_RS28760 (LCH33_005726) | 20743..21648 | - | 906 | WP_102886305.1 | ABC transporter permease | - |
| LCH33_RS28765 (LCH33_005727) | 21653..22765 | - | 1113 | WP_102886306.1 | ABC transporter substrate-binding protein | - |
| LCH33_RS28770 (LCH33_005728) | 22800..23702 | - | 903 | WP_102886307.1 | TauD/TfdA family dioxygenase | - |
| LCH33_RS28775 (LCH33_005729) | 23957..25450 | + | 1494 | WP_102886357.1 | PucR family transcriptional regulator ligand-binding domain-containing protein | - |
| LCH33_RS28780 (LCH33_005730) | 25482..26888 | - | 1407 | WP_102886308.1 | FAD-binding oxidoreductase | - |
| LCH33_RS28785 (LCH33_005731) | 27250..29277 | + | 2028 | WP_102886309.1 | hydantoinase/oxoprolinase family protein | - |
| LCH33_RS28790 (LCH33_005732) | 29294..31069 | + | 1776 | WP_102886310.1 | hydantoinase B/oxoprolinase family protein | - |
| LCH33_RS28795 (LCH33_005733) | 31232..32401 | + | 1170 | WP_225231717.1 | porin | - |
| LCH33_RS28800 (LCH33_005734) | 32449..32799 | - | 351 | WP_102886311.1 | cupin domain-containing protein | - |
| LCH33_RS28805 (LCH33_005735) | 33075..34079 | - | 1005 | Protein_39 | salicylate 1-monooxygenase | - |
| LCH33_RS28810 (LCH33_005736) | 34186..35022 | - | 837 | WP_000480968.1 | hypothetical protein | ARG |
| LCH33_RS28815 (LCH33_005737) | 35022..35825 | - | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| LCH33_RS28820 (LCH33_005738) | 35891..36505 | - | 615 | WP_000904906.1 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| LCH33_RS28825 (LCH33_005739) | 36631..39516 | + | 2886 | WP_225231718.1 | Tn3 family transposase TnpA_ISRsp12 | Transposase |
| LCH33_RS28830 (LCH33_005740) | 39570..39836 | + | 267 | WP_043541721.1 | Tn3 family transposase ISPsy42 | Transposase |
| LCH33_RS28835 (LCH33_005741) | 39869..40114 | + | 246 | Protein_45 | transposase | - |
| LCH33_RS28840 (LCH33_005742) | 40210..41094 | + | 885 | WP_003465017.1 | HTH-type transcriptional regulator CysL | VF |
| LCH33_RS28845 (LCH33_005743) | 41278..41878 | - | 601 | Protein_47 | uracil-DNA glycosylase family protein | - |
| LCH33_RS28850 (LCH33_005744) | 41952..42236 | - | 285 | WP_229006821.1 | cytochrome P460 family protein | - |
| LCH33_RS28855 (LCH33_005745) | 42395..42928 | - | 534 | WP_032437899.1 | carboxymuconolactone decarboxylase family protein | - |
| LCH33_RS28860 (LCH33_005746) | 43046..43888 | + | 843 | WP_033938195.1 | AraC family transcriptional regulator | - |
| LCH33_RS28865 (LCH33_005747) | 44333..44935 | + | 603 | WP_010465829.1 | Tn3 family transposase TnpR_ISPsy30 | Transposase |
| LCH33_RS28870 (LCH33_005748) | 44919..47948 | + | 3030 | WP_176600762.1 | Tn3 family transposase ISPsy42 | Transposase |
| LCH33_RS28875 (LCH33_005749) | 48185..49030 | + | 846 | WP_003464995.1 | AraC family transcriptional regulator | - |
| LCH33_RS28880 (LCH33_005750) | 49060..49578 | - | 519 | WP_003464991.1 | DUF417 family protein | - |
| LCH33_RS28885 (LCH33_005751) | 50037..50966 | - | 930 | WP_003150544.1 | Tn3 family transposase TnpR_ISThsp9 | Transposase |
| LCH33_RS28890 (LCH33_005752) | 51051..51545 | - | 495 | WP_102886320.1 | hypothetical protein | - |
| LCH33_RS28895 (LCH33_005753) | 51662..52459 | - | 798 | WP_102886321.1 | SprT-like domain-containing protein | - |
| LCH33_RS28900 (LCH33_005754) | 52590..52982 | - | 393 | WP_102886322.1 | hypothetical protein | - |
| LCH33_RS28905 (LCH33_005755) | 52986..53705 | - | 720 | WP_102886323.1 | StbB family protein | - |
| LCH33_RS28910 (LCH33_005756) | 53702..54175 | - | 474 | WP_102886324.1 | TraD protein | - |
| LCH33_RS28915 (LCH33_005757) | 54608..54991 | + | 384 | WP_225231712.1 | hypothetical protein | - |
| LCH33_RS28920 (LCH33_005758) | 54991..56541 | + | 1551 | WP_102886325.1 | type IV secretion system DNA-binding domain-containing protein | - |
| LCH33_RS28925 (LCH33_005759) | 56553..59489 | + | 2937 | WP_102886326.1 | Multifunctional conjugation protein TraI | Relaxase |
| LCH33_RS28930 (LCH33_005760) | 59535..59960 | - | 426 | WP_146034178.1 | hypothetical protein | - |
| LCH33_RS28935 (LCH33_005761) | 60028..60660 | - | 633 | WP_102886328.1 | nuclease | - |
| LCH33_RS28940 (LCH33_005762) | 60673..61284 | - | 612 | WP_225231713.1 | Phospholipase D | VF |
| LCH33_RS28945 (LCH33_005763) | 61274..61609 | - | 336 | WP_102886329.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| LCH33_RS28950 (LCH33_005764) | 61638..62555 | - | 918 | WP_102886330.1 | Type IV secretion system protein virB1 | VF |
| LCH33_RS28955 (LCH33_005765) | 62539..63567 | - | 1029 | WP_102886331.1 | Type IV secretion system protein VirB11 | VF |
| LCH33_RS28960 (LCH33_005766) | 63577..64839 | - | 1263 | WP_102886332.1 | TrbI/VirB10 family protein | - |
| LCH33_RS28965 (LCH33_005767) | 64842..65627 | - | 786 | WP_102886333.1 | Type IV secretion system protein virB9 | VF |
| LCH33_RS28970 (LCH33_005768) | 65655..66329 | - | 675 | WP_102886334.1 | type IV secretion system protein | - |
| LCH33_RS28975 (LCH33_005769) | 66329..67192 | - | 864 | WP_102886335.1 | type IV secretion system protein | - |
| LCH33_RS28980 (LCH33_005770) | 67180..67572 | - | 393 | WP_102886336.1 | hypothetical protein | - |
| LCH33_RS28985 (LCH33_005771) | 67565..67777 | - | 213 | WP_102886337.1 | hypothetical protein | - |
| LCH33_RS28990 (LCH33_005772) | 67805..68494 | - | 690 | WP_102886338.1 | type IV secretion system protein | - |
| LCH33_RS28995 (LCH33_005773) | 68494..71136 | - | 2643 | WP_102886339.1 | Type IV secretion system protein virB4 | VF |
| LCH33_RS29000 (LCH33_005774) | 71165..71461 | - | 297 | WP_102886340.1 | VirB3 family type IV secretion system protein | - |
| LCH33_RS29005 (LCH33_005775) | 71470..71931 | - | 462 | WP_102886341.1 | TrbC/VirB2 family protein | - |
| LCH33_RS29010 (LCH33_005776) | 72935..73702 | + | 768 | WP_102886343.1 | Chromosome-partitioning ATPase Soj | VF |
| LCH33_RS29015 (LCH33_005777) | 73713..74660 | + | 948 | WP_102886344.1 | ParB/RepB/Spo0J family partition protein | - |
| LCH33_RS29020 (LCH33_005778) | 74657..75007 | + | 351 | WP_102886345.1 | TrfB-related DNA-binding protein | - |
| LCH33_RS29025 (LCH33_005779) | 75004..75411 | + | 408 | WP_102886346.1 | hypothetical protein | - |
| LCH33_RS29030 (LCH33_005780) | 75652..76287 | + | 636 | WP_061305022.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|