MGE detailed information
MGE type: Prophage MGE length: 24357 bp
Accession: NZ_CP084205 Location: 2226752..2251108 Organism: Escherichia coli strain EC2648-R1 Replicon: chromosome
Accession: NZ_CP084205 Location: 2226752..2251108 Organism: Escherichia coli strain EC2648-R1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDB14_RS10690 (2222003) | 2222003..2222713 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| LDB14_RS10695 (2222716) | 2222716..2223276 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| LDB14_RS10700 (2223311) | 2223311..2223652 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| LDB14_RS10705 (2223787) | 2223787..2224113 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| LDB14_RS10710 (2224319) | 2224319..2225533 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| LDB14_RS10715 (2225545) | 2225545..2226564 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| LDB14_RS10720 (2226752) | 2226752..2227909 | - | 1158 | Protein_2104 | Tyrosine recombinase XerD ; Integrase | Integrase |
| LDB14_RS10725 (2227923) | 2227923..2228618 | - | 696 | Protein_2105 | IS3 family transposase IS2 | Transposase |
| LDB14_RS10730 (2228615) | 2228615..2229382 | - | 768 | Protein_2106 | exonuclease | - |
| LDB14_RS10735 (2229475) | 2229475..2229666 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| LDB14_RS10740 (2229663) | 2229663..2229851 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| LDB14_RS10745 (2230419) | 2230419..2230637 | - | 219 | WP_001171942.1 | protein YdfC | - |
| LDB14_RS23305 (2230667) | 2230667..2230795 | - | 129 | WP_000344964.1 | protein YdfB | - |
| LDB14_RS10750 (2230797) | 2230797..2230952 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| LDB14_RS10755 (2231119) | 2231119..2231526 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| LDB14_RS10760 (2231610) | 2231610..2231840 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| LDB14_RS10765 (2231824) | 2231824..2232102 | + | 279 | Protein_2114 | protein YdfX | - |
| LDB14_RS10770 (2232137) | 2232137..2232286 | + | 150 | WP_011443592.1 | protein YdfW | - |
| LDB14_RS10775 (2232723) | 2232723..2233055 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| LDB14_RS10780 (2233258) | 2233258..2233563 | - | 306 | WP_001326990.1 | protein YdfV | - |
| LDB14_RS10785 (2233588) | 2233588..2233827 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| LDB14_RS10790 (2233827) | 2233827..2234114 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| LDB14_RS10795 (2234186) | 2234186..2234341 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| LDB14_RS10800 (2234558) | 2234558..2234809 | + | 252 | WP_000980994.1 | protein Rem | - |
| LDB14_RS10805 (2234876) | 2234876..2235154 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| LDB14_RS10810 (2235156) | 2235156..2236205 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| LDB14_RS10815 (2236219) | 2236219..2236971 | + | 753 | WP_001047135.1 | antitermination protein | - |
| LDB14_RS10820 (2237249) | 2237249..2237338 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| LDB14_RS10825 (2237393) | 2237393..2237605 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| LDB14_RS10830 (2237906) | 2237906..2238121 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| LDB14_RS10835 (2238485) | 2238485..2238655 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| LDB14_RS10840 (2238875) | 2238875..2239090 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| LDB14_RS10845 (2239095) | 2239095..2239406 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| LDB14_RS10850 (2239403) | 2239403..2239936 | + | 534 | WP_001092971.1 | lysozyme | - |
| LDB14_RS10855 (2239933) | 2239933..2240430 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| LDB14_RS10860 (2240793) | 2240793..2241005 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| LDB14_RS10865 (2241016) | 2241016..2241204 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| LDB14_RS10870 (2241207) | 2241207..2241272 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| LDB14_RS10875 (2241351) | 2241351..2241506 | + | 156 | WP_001309517.1 | protein YnfN | - |
| LDB14_RS10880 (2241678) | 2241678..2241851 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| LDB14_RS10885 (2242003) | 2242003..2242413 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| LDB14_RS10890 (2242471) | 2242471..2242704 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| LDB14_RS10895 (2243093) | 2243093..2243662 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| LDB14_RS10900 (2243613) | 2243613..2244575 | + | 963 | WP_001027733.1 | phage tail protein | - |
| LDB14_RS10905 (2244575) | 2244575..2245150 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| LDB14_RS10910 (2245248) | 2245248..2245838 | - | 591 | WP_000086525.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| LDB14_RS10915 (2246155) | 2246155..2246388 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| LDB14_RS10920 (2246457) | 2246457..2246570 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| LDB14_RS10925 (2247091) | 2247091..2248458 | + | 1368 | Protein_2146 | MHS family MFS transporter | - |
| LDB14_RS10930 (2248547) | 2248547..2250007 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| LDB14_RS10935 (2250042) | 2250042..2250245 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| LDB14_RS10940 (2250422) | 2250422..2251108 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| LDB14_RS10945 (2251197) | 2251197..2251943 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| LDB14_RS10950 (2252080) | 2252080..2254125 | + | 2046 | WP_000210373.1 | peptidyl-dipeptidase Dcp | - |
| LDB14_RS10955 (2254169) | 2254169..2254687 | - | 519 | WP_001024746.1 | 2-oxo-tetronate isomerase | - |
| LDB14_RS10960 (2254963) | 2254963..2255355 | + | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.005 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0.003 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.006 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.005 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0.003 |