MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 108559 bp
Accession: NZ_CP084056 Location: 1..108559 Organism: Escherichia coli strain X14-3 Replicon: plasmid pX14-3-tetA
Accession: NZ_CP084056 Location: 1..108559 Organism: Escherichia coli strain X14-3 Replicon: plasmid pX14-3-tetA
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCR13_RS22255 (LCR13_22265) | 3610..3815 | - | 206 | Protein_1 | hypothetical protein | - |
| LCR13_RS22260 (LCR13_22270) | 3814..3927 | + | 114 | Protein_2 | alkaline phosphatase | - |
| LCR13_RS22265 (LCR13_22275) | 4295..4582 | - | 288 | WP_000222771.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LCR13_RS22270 (LCR13_22280) | 4579..4830 | - | 252 | WP_001139206.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| LCR13_RS22275 (LCR13_22285) | 5413..5682 | + | 270 | Protein_5 | hypothetical protein | - |
| LCR13_RS22280 (LCR13_22290) | 5911..7311 | + | 1401 | WP_032185977.1 | cytochrome ubiquinol oxidase subunit I | - |
| LCR13_RS22285 (LCR13_22295) | 7311..8321 | + | 1011 | WP_000510495.1 | cytochrome d ubiquinol oxidase subunit II | - |
| LCR13_RS22290 (LCR13_22300) | 8321..8449 | + | 129 | WP_001164804.1 | DUF2474 domain-containing protein | - |
| LCR13_RS22295 (LCR13_22305) | 8554..8967 | - | 414 | Protein_9 | collagenase-like protease | - |
| LCR13_RS22300 (LCR13_22310) | 9206..11328 | + | 2123 | Protein_10 | helicase | - |
| LCR13_RS22305 (LCR13_22315) | 11362..11802 | + | 441 | WP_000224043.1 | hypothetical protein | - |
| LCR13_RS22310 (LCR13_22320) | 11799..12047 | + | 249 | WP_000747846.1 | hypothetical protein | - |
| LCR13_RS22315 (LCR13_22325) | 12317..12898 | + | 582 | Protein_13 | AAA family ATPase | - |
| LCR13_RS22320 (LCR13_22330) | 12961..13665 | - | 705 | WP_001067852.1 | IS6 family transposase IS26 | Transposase |
| LCR13_RS22325 (LCR13_22335) | 13656..14144 | + | 489 | WP_072075272.1 | replication initiation protein | - |
| LCR13_RS22330 (LCR13_22340) | 15991..16560 | - | 570 | WP_001749988.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| LCR13_RS22335 (LCR13_22345) | 16953..17629 | - | 677 | Protein_17 | IS91 family transposase ISMno23 | Transposase |
| LCR13_RS22340 (LCR13_22350) | 17694..18398 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| LCR13_RS22345 (LCR13_22355) | 18404..18544 | + | 141 | WP_001044210.1 | hypothetical protein | - |
| LCR13_RS22350 (LCR13_22360) | 19030..19767 | + | 738 | WP_001366550.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| LCR13_RS22355 (LCR13_22365) | 19764..19988 | + | 225 | WP_000743213.1 | hypothetical protein | - |
| LCR13_RS22360 (LCR13_22370) | 20199..21692 | + | 1494 | WP_015344975.1 | IS91 family transposase ISVsa3 | Transposase |
| LCR13_RS22365 (LCR13_22375) | 21723..22607 | + | 885 | WP_001447541.1 | DUF3363 domain-containing protein | - |
| LCR13_RS22370 (LCR13_22380) | 22824..24038 | + | 1215 | WP_058100717.1 | Bicyclomycin resistance protein | ARG |
| LCR13_RS22375 (LCR13_22385) | 24066..24371 | + | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| LCR13_RS22380 (LCR13_22390) | 24483..24671 | + | 189 | Protein_26 | IS91 family transposase | - |
| LCR13_RS22385 (LCR13_22395) | 24638..25837 | - | 1200 | WP_000804063.1 | Tetracycline resistance protein, class C | ARG |
| LCR13_RS22390 (LCR13_22400) | 25943..26593 | + | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| LCR13_RS22395 (LCR13_22405) | 26625..26867 | - | 243 | WP_024203663.1 | hypothetical protein | - |
| LCR13_RS22400 (LCR13_22410) | 26925..28475 | - | 1551 | Protein_30 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| LCR13_RS22405 (LCR13_22415) | 28530..29234 | - | 705 | WP_001067852.1 | IS6 family transposase IS26 | Transposase |
| LCR13_RS22410 (LCR13_22420) | 29498..30571 | - | 1074 | WP_000557466.1 | hypothetical protein | - |
| LCR13_RS22415 (LCR13_22425) | 30615..30764 | - | 150 | WP_000550473.1 | hypothetical protein | - |
| LCR13_RS22420 (LCR13_22430) | 30971..31081 | - | 111 | Protein_34 | protein YdfV | - |
| LCR13_RS22425 (LCR13_22435) | 31106..31345 | + | 240 | WP_000534857.1 | type II toxin-antitoxin system antitoxin RelB | - |
| LCR13_RS22430 (LCR13_22440) | 31345..31506 | + | 162 | Protein_36 | type II toxin-antitoxin system mRNA interferase RelE | - |
| LCR13_RS22435 (LCR13_22445) | 31641..32186 | + | 546 | WP_001493763.1 | plasmid pRiA4b ORF-3 family protein | - |
| LCR13_RS22440 (LCR13_22450) | 32323..32895 | + | 573 | WP_001493762.1 | Tn3 family transposase TnpR_ISPa40 | Transposase |
| LCR13_RS22445 (LCR13_22455) | 32932..34323 | + | 1392 | WP_001493761.1 | ISKra4 family transposase ISKpn19 | Transposase |
| LCR13_RS22450 (LCR13_22460) | 34356..34784 | + | 429 | Protein_40 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| LCR13_RS22455 (LCR13_22465) | 35103..35759 | - | 657 | WP_001516695.1 | Pentapeptide repeat protein | ARG |
| LCR13_RS22460 (LCR13_22470) | 36154..37169 | + | 1016 | Protein_42 | IS3 family transposase ISEc36 | Transposase |
| LCR13_RS22465 (LCR13_22475) | 37212..40217 | - | 3006 | WP_001143760.1 | Tn3 family transposase TnpA_Tn3 | Transposase |
| LCR13_RS22470 (LCR13_22480) | 40381..40938 | + | 558 | WP_001217881.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| LCR13_RS22475 (LCR13_22485) | 41121..41981 | + | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| LCR13_RS22480 (LCR13_22490) | 42143..42958 | + | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| LCR13_RS22485 (LCR13_22495) | 43019..43822 | + | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| LCR13_RS22490 (LCR13_22500) | 43822..44658 | + | 837 | WP_000480968.1 | hypothetical protein | ARG |
| LCR13_RS22495 (LCR13_22505) | 44964..45206 | + | 243 | WP_000844627.1 | transposase | - |
| LCR13_RS22500 (LCR13_22510) | 45238..45888 | - | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| LCR13_RS22505 (LCR13_22515) | 45994..47193 | + | 1200 | WP_000804064.1 | Tetracycline resistance protein, class C | ARG |
| LCR13_RS22510 (LCR13_22520) | 47225..48109 | - | 885 | WP_000058717.1 | EamA family transporter | - |
| LCR13_RS22515 (LCR13_22525) | 48247..48639 | - | 393 | WP_001351729.1 | isochorismatase family cysteine hydrolase | - |
| LCR13_RS22520 (LCR13_22530) | 48643..50394 | + | 1752 | Protein_54 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| LCR13_RS22525 (LCR13_22535) | 50391..50705 | - | 315 | WP_050901219.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| LCR13_RS22530 (LCR13_22540) | 50811..51944 | + | 1134 | WP_001089729.1 | permease | - |
| LCR13_RS22535 (LCR13_22545) | 52072..52476 | - | 405 | Protein_57 | recombinase family protein | - |
| LCR13_RS22540 (LCR13_22550) | 52644..55631 | + | 2988 | WP_000124023.1 | Tn3 family transposase TnpA_TnEc1 | Transposase |
| LCR13_RS22545 (LCR13_22555) | 55731..56291 | - | 561 | WP_000848360.1 | Ref family protein | - |
| LCR13_RS22550 (LCR13_22560) | 56539..56850 | - | 312 | WP_032214403.1 | hypothetical protein | - |
| LCR13_RS22555 (LCR13_22565) | 56901..57932 | - | 1032 | WP_000067532.1 | site-specific integrase | - |
| LCR13_RS22560 (LCR13_22570) | 57940..58161 | - | 222 | WP_032214402.1 | hypothetical protein | - |
| LCR13_RS22565 (LCR13_22575) | 58758..58967 | + | 210 | WP_000874154.1 | hypothetical protein | - |
| LCR13_RS22570 (LCR13_22580) | 59078..59929 | + | 852 | WP_000611656.1 | phage repressor protein C1 | - |
| LCR13_RS22575 (LCR13_22585) | 59954..61396 | - | 1443 | WP_223656860.1 | terminase | - |
| LCR13_RS22580 (LCR13_22590) | 61438..62631 | - | 1194 | WP_032214401.1 | hypothetical protein | - |
| LCR13_RS22585 (LCR13_22595) | 62717..63169 | - | 453 | WP_001326849.1 | late promoter-activating protein | - |
| LCR13_RS22590 (LCR13_22600) | 63258..64301 | - | 1044 | WP_094318254.1 | DUF968 domain-containing protein | - |
| LCR13_RS22595 (LCR13_22605) | 64329..64508 | - | 180 | WP_000113018.1 | hypothetical protein | - |
| LCR13_RS22600 (LCR13_22610) | 64513..64893 | - | 381 | WP_001216034.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| LCR13_RS22605 (LCR13_22615) | 64893..65114 | - | 222 | WP_001190712.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| LCR13_RS22610 (LCR13_22620) | 65187..65576 | - | 390 | WP_000506724.1 | S24 family peptidase | - |
| LCR13_RS22615 (LCR13_22625) | 65928..66335 | + | 408 | WP_223656859.1 | hypothetical protein | - |
| LCR13_RS22620 (LCR13_22630) | 66336..66692 | + | 357 | WP_001062545.1 | hypothetical protein | - |
| LCR13_RS22625 (LCR13_22635) | 67768..67998 | - | 231 | WP_223656858.1 | hypothetical protein | - |
| LCR13_RS22630 (LCR13_22640) | 68126..69304 | - | 1179 | WP_094318253.1 | hypothetical protein | - |
| LCR13_RS24390 | 69314..69448 | - | 135 | WP_272955174.1 | hypothetical protein | - |
| LCR13_RS22635 (LCR13_22645) | 69499..70005 | - | 507 | WP_000021754.1 | hypothetical protein | - |
| LCR13_RS22640 (LCR13_22650) | 70078..71340 | - | 1263 | WP_094318251.1 | hypothetical protein | - |
| LCR13_RS22645 (LCR13_22655) | 71875..72572 | + | 698 | WP_103215986.1 | IS1 family transposase IS1G | Transposase |
| LCR13_RS22650 (LCR13_22660) | 72507..72779 | - | 273 | WP_050489281.1 | PerC family transcriptional regulator | - |
| LCR13_RS22655 (LCR13_22665) | 72869..73603 | + | 735 | WP_000578338.1 | helix-turn-helix domain-containing protein | - |
| LCR13_RS22660 (LCR13_22670) | 73758..73871 | - | 114 | Protein_83 | hypothetical protein | - |
| LCR13_RS22670 (LCR13_22680) | 74787..78260 | - | 3474 | WP_254825562.1 | cellulose synthase complex outer membrane protein BcsC | - |
| LCR13_RS22675 (LCR13_22685) | 78242..78394 | - | 153 | Protein_86 | endo-1,4-D-glucanase | - |
| LCR13_RS22680 (LCR13_22690) | 78727..79113 | - | 387 | Protein_87 | IS200/IS605 family transposase | - |
| LCR13_RS22685 (LCR13_22695) | 79300..80646 | - | 1347 | WP_096942825.1 | group II intron reverse transcriptase/maturase | - |
| LCR13_RS22690 (LCR13_22700) | 81390..83540 | - | 2151 | WP_001351999.1 | cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB | - |
| LCR13_RS22695 (LCR13_22705) | 83604..85709 | - | 2106 | WP_218413848.1 | UDP-forming cellulose synthase catalytic subunit | - |
| LCR13_RS22700 (LCR13_22710) | 85790..86487 | + | 698 | WP_254825561.1 | IS1 family transposase IS1G | Transposase |
| LCR13_RS22705 (LCR13_22715) | 86498..86926 | - | 429 | WP_254825563.1 | CHASE9 sensor domain-containing protein | - |
| LCR13_RS22710 (LCR13_22720) | 87533..88501 | + | 969 | WP_254825437.1 | IS5 family transposase IS903B | Transposase |
| LCR13_RS22715 (LCR13_22725) | 88562..89032 | + | 471 | Protein_94 | hypothetical protein | - |
| LCR13_RS22720 (LCR13_22730) | 89204..89494 | + | 291 | WP_001642860.1 | hypothetical protein | - |
| LCR13_RS24395 | 89529..89660 | + | 132 | WP_001113883.1 | hypothetical protein | - |
| LCR13_RS22725 (LCR13_22735) | 89672..90064 | + | 393 | WP_112918729.1 | hypothetical protein | - |
| LCR13_RS22730 (LCR13_22740) | 90400..91284 | + | 885 | WP_001113742.1 | RepB family plasmid replication initiator protein | - |
| LCR13_RS22735 (LCR13_22745) | 91577..92386 | + | 810 | WP_032247076.1 | GIY-YIG nuclease family protein | - |
| LCR13_RS22740 (LCR13_22750) | 92555..93751 | + | 1197 | WP_001285362.1 | AAA family ATPase | - |
| LCR13_RS22745 (LCR13_22755) | 93768..94769 | + | 1002 | WP_000038866.1 | ParB family protein | - |
| LCR13_RS22750 (LCR13_22760) | 94995..96701 | + | 1707 | WP_094318215.1 | hypothetical protein | - |
| LCR13_RS22755 (LCR13_22765) | 96761..98350 | + | 1590 | WP_112918728.1 | hypothetical protein | - |
| LCR13_RS22760 (LCR13_22770) | 98360..99175 | + | 816 | WP_000041769.1 | hypothetical protein | - |
| LCR13_RS22765 (LCR13_22775) | 99328..99792 | + | 465 | WP_016240405.1 | hypothetical protein | - |
| LCR13_RS22770 (LCR13_22780) | 99804..100313 | + | 510 | WP_000509940.1 | hypothetical protein | - |
| LCR13_RS22775 (LCR13_22785) | 100589..101701 | - | 1113 | WP_001300563.1 | IS4 family transposase IS421 | Transposase |
| LCR13_RS22780 (LCR13_22790) | 101779..101934 | - | 156 | WP_001352007.1 | type I toxin-antitoxin system toxin HokD | - |
| LCR13_RS22785 (LCR13_22795) | 102332..103549 | + | 1218 | Protein_109 | IS3 family transposase | - |
| LCR13_RS22790 (LCR13_22800) | 103947..104643 | + | 697 | Protein_110 | IS1 family transposase | - |
| LCR13_RS22795 (LCR13_22805) | 104801..105673 | - | 873 | WP_000794337.1 | hypothetical protein | - |
| LCR13_RS22800 (LCR13_22810) | 105849..106313 | - | 465 | WP_001352013.1 | helix-turn-helix transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|