MGE detailed information
MGE type: Prophage MGE length: 24510 bp
Accession: NZ_CP084032 Location: 448051..472560 Organism: Pectobacterium colocasium strain LJ1 Replicon: chromosome
Accession: NZ_CP084032 Location: 448051..472560 Organism: Pectobacterium colocasium strain LJ1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCF41_RS02020 | 443560..445071 | - | 1512 | WP_225086676.1 | leucyl aminopeptidase | - |
| LCF41_RS02025 | 445355..446470 | + | 1116 | WP_225086677.1 | LPS export ABC transporter permease LptF | - |
| LCF41_RS02030 | 446470..447546 | + | 1077 | WP_225086678.1 | LPS export ABC transporter permease LptG | - |
| LCF41_RS02040 | 448051..449310 | + | 1260 | WP_225086679.1 | Prophage integrase IntA ; Integrase | Integrase |
| LCF41_RS02045 | 449410..450522 | - | 1113 | WP_225086680.1 | hypothetical protein | - |
| LCF41_RS02050 | 450525..451274 | - | 750 | WP_250160545.1 | AAA family ATPase | - |
| LCF41_RS02055 | 451500..452540 | - | 1041 | WP_225084894.1 | IS630 family transposase ISEc33 | Transposase |
| LCF41_RS02060 | 452637..453236 | - | 600 | WP_225086681.1 | AAA family ATPase | - |
| LCF41_RS02065 | 453318..453551 | - | 234 | WP_225088257.1 | hypothetical protein | - |
| LCF41_RS02070 | 453670..453918 | - | 249 | WP_180829690.1 | ogr/Delta-like zinc finger family protein | - |
| LCF41_RS02075 | 453915..454670 | - | 756 | WP_225086682.1 | capsid size determination protein | - |
| LCF41_RS02080 | 455210..455470 | + | 261 | WP_225086683.1 | AlpA family transcriptional regulator | - |
| LCF41_RS02085 | 455467..455691 | + | 225 | WP_005973635.1 | hypothetical protein | - |
| LCF41_RS22180 | 455811..456014 | + | 204 | Protein_403 | ash family protein | - |
| LCF41_RS02095 | 456050..456247 | + | 198 | WP_225088079.1 | host cell division inhibitor Icd-like protein | - |
| LCF41_RS02100 | 456240..456434 | + | 195 | WP_225088080.1 | hypothetical protein | - |
| LCF41_RS02105 | 456431..456697 | + | 267 | WP_225086684.1 | hypothetical protein | - |
| LCF41_RS02110 | 456694..457035 | + | 342 | WP_212768710.1 | DUF5375 family protein | - |
| LCF41_RS02115 | 457047..459371 | + | 2325 | WP_225086685.1 | phage/plasmid primase, P4 family | - |
| LCF41_RS02120 | 459632..459883 | + | 252 | WP_005973616.1 | prevent-host-death protein | Antitoxin Detail |
| LCF41_RS02125 | 459873..460157 | + | 285 | WP_005973612.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LCF41_RS02130 | 460772..461720 | + | 949 | Protein_411 | site-specific integrase | - |
| LCF41_RS02135 | 461739..461900 | + | 162 | WP_225086686.1 | CopG family transcriptional regulator | - |
| LCF41_RS02140 | 462208..462513 | + | 306 | WP_225086687.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| LCF41_RS02145 | 462518..463852 | + | 1335 | WP_225086688.1 | type II toxin-antitoxin system HipA family toxin | Toxin Detail |
| LCF41_RS02150 | 464128..465216 | - | 1089 | WP_225088081.1 | helicase RepA family protein | - |
| LCF41_RS02155 | 465328..466086 | - | 759 | Protein_416 | primase-helicase zinc-binding domain-containing protein | - |
| LCF41_RS02160 | 466157..466693 | - | 537 | WP_225086689.1 | ash family protein | - |
| LCF41_RS02165 | 466690..466890 | - | 201 | WP_225086690.1 | AlpA family transcriptional regulator | - |
| LCF41_RS02170 | 466893..467771 | - | 879 | WP_225086691.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| LCF41_RS02175 | 468770..468871 | + | 102 | Protein_420 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| LCF41_RS02180 | 468891..469214 | + | 324 | WP_225086692.1 | DNA-binding transcriptional regulator | - |
| LCF41_RS02185 | 470049..470819 | + | 771 | WP_225086693.1 | FRG domain-containing protein | - |
| LCF41_RS02190 | 470914..472560 | + | 1647 | WP_225086694.1 | AAA family ATPase | - |
| LCF41_RS02195 | 473301..473933 | + | 633 | WP_225086695.1 | LysE family translocator | - |
| LCF41_RS02200 | 474173..474601 | + | 429 | WP_225086696.1 | GNAT family N-acetyltransferase | - |
| LCF41_RS02205 | 474692..475813 | + | 1122 | WP_225086697.1 | cupin domain-containing protein | - |
| LCF41_RS02210 | 476079..477215 | + | 1137 | WP_225086698.1 | lipase family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|