MGE detailed information
MGE type: Prophage MGE length: 75958 bp
Accession: NZ_CP084026 Location: 911300..987257 Organism: Escherichia coli strain 035053C1pKPC2_Vir_090515B1 Replicon: chromosome
Accession: NZ_CP084026 Location: 911300..987257 Organism: Escherichia coli strain 035053C1pKPC2_Vir_090515B1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LC440_RS04410 (907033) | 907033..908166 | - | 1134 | WP_000064752.1 | NADH:flavorubredoxin reductase NorW | - |
| LC440_RS04415 (908163) | 908163..909602 | - | 1440 | WP_000029634.1 | anaerobic nitric oxide reductase flavorubredoxin | - |
| LC440_RS04420 (909789) | 909789..911303 | + | 1515 | WP_000010749.1 | nitric oxide reductase transcriptional regulator NorR | - |
| LC440_RS04425 (911300) | 911300..912265 | - | 966 | WP_001287420.1 | hypothetical protein | VF |
| LC440_RS04430 (912258) | 912258..913031 | - | 774 | WP_000804550.1 | glucitol operon DNA-binding transcriptional repressor SrlR | - |
| LC440_RS04435 (913098) | 913098..913457 | - | 360 | WP_000252908.1 | transcriptional regulator GutM | - |
| LC440_RS04440 (913562) | 913562..914341 | - | 780 | WP_001077358.1 | sorbitol-6-phosphate dehydrogenase | - |
| LC440_RS04445 (914345) | 914345..914716 | - | 372 | WP_000216194.1 | PTS glucitol/sorbitol transporter subunit IIA | - |
| LC440_RS04450 (914727) | 914727..915686 | - | 960 | WP_000148878.1 | PTS glucitol/sorbitol transporter subunit IIB | - |
| LC440_RS04455 (915683) | 915683..916246 | - | 564 | WP_000573321.1 | PTS glucitol/sorbitol transporter subunit IIC | - |
| LC440_RS04460 (916502) | 916502..917587 | + | 1086 | WP_001295177.1 | lytic murein transglycosylase B | - |
| LC440_RS04465 (917732) | 917732..918229 | + | 498 | WP_000132231.1 | nicotinamide-nucleotide amidase | - |
| LC440_RS04470 (918309) | 918309..919370 | + | 1062 | WP_000963143.1 | recombinase RecA | - |
| LC440_RS04475 (919439) | 919439..919939 | + | 501 | WP_000140508.1 | recombination regulator RecX | - |
| LC440_RS04480 (920067) | 920067..922697 | + | 2631 | WP_000047184.1 | alanine--tRNA ligase | - |
| LC440_RS04485 (922932) | 922932..923117 | + | 186 | WP_000906486.1 | carbon storage regulator CsrA | - |
| LC440_RS04515 (924575) | 924575..925141 | + | 567 | WP_000273290.1 | fructose-1-phosphate/6-phosphogluconate phosphatase | - |
| LC440_RS04520 (925138) | 925138..925566 | + | 429 | WP_001287454.1 | YqaA family protein | - |
| LC440_RS04525 (925639) | 925639..927195 | + | 1557 | WP_000611804.1 | glutamate--cysteine ligase | - |
| LC440_RS04530 (927345) | 927345..927860 | + | 516 | WP_001130211.1 | hypothetical protein | VF |
| LC440_RS04535 (927924) | 927924..929462 | - | 1539 | WP_001295176.1 | hypothetical protein | VF |
| LC440_RS04540 (929479) | 929479..930651 | - | 1173 | WP_001326681.1 | hypothetical protein | VF |
| LC440_RS04545 (930778) | 930778..931308 | - | 531 | WP_000378442.1 | hypothetical protein | VF |
| LC440_RS04550 (931399) | 931399..931734 | - | 336 | WP_000119763.1 | L-valine transporter subunit YgaH | - |
| LC440_RS04555 (931724) | 931724..932461 | - | 738 | WP_000445651.1 | L-valine exporter subunit YgaZ | - |
| LC440_RS04560 (932585) | 932585..933762 | - | 1178 | Protein_887 | MFS transporter | - |
| LC440_RS04565 (933954) | 933954..934946 | - | 993 | WP_001216525.1 | glycine betaine/L-proline ABC transporter substrate-binding protein ProX | - |
| LC440_RS04570 (935004) | 935004..936068 | - | 1065 | WP_000774988.1 | glycine betaine/L-proline ABC transporter permease ProW | - |
| LC440_RS04575 (936061) | 936061..937263 | - | 1203 | WP_000985494.1 | hypothetical protein | VF |
| LC440_RS04580 (937617) | 937617..938576 | - | 960 | WP_000777969.1 | class 1b ribonucleoside-diphosphate reductase subunit beta | - |
| LC440_RS04585 (938586) | 938586..940730 | - | 2145 | WP_000246534.1 | class 1b ribonucleoside-diphosphate reductase subunit alpha | - |
| LC440_RS04590 (940703) | 940703..941113 | - | 411 | WP_000080947.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
| LC440_RS04595 (941110) | 941110..941355 | - | 246 | WP_001223227.1 | glutaredoxin-like protein NrdH | - |
| LC440_RS04600 (941603) | 941603..941932 | - | 330 | WP_001295174.1 | DUF883 domain-containing protein | - |
| LC440_RS04605 (942084) | 942084..942428 | + | 345 | WP_000281320.1 | DUF2002 family protein | - |
| LC440_RS04610 (942465) | 942465..942914 | - | 450 | WP_000492656.1 | L-alanine exporter AlaE | - |
| LC440_RS04615 (943583) | 943583..943987 | + | 405 | WP_000115383.1 | DNA-binding protein StpA | - |
| LC440_RS04620 (944034) | 944034..944558 | - | 525 | WP_001229442.1 | thiosulfate sulfurtransferase YgaP | - |
| LC440_RS04625 (944568) | 944568..944867 | - | 300 | WP_000137280.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| LC440_RS04630 (945050) | 945050..945208 | + | 159 | WP_000508177.1 | YqaE/Pmp3 family membrane protein | - |
| LC440_RS04635 (945292) | 945292..945741 | + | 450 | WP_000522415.1 | potassium binding protein Kbp | - |
| LC440_RS04640 (945742) | 945742..946404 | - | 663 | WP_000156811.1 | DNA-binding transcriptional regulator CsiR | - |
| LC440_RS04645 (946425) | 946425..947825 | - | 1401 | WP_001295173.1 | GABA permease | - |
| LC440_RS04650 (948063) | 948063..949343 | - | 1281 | WP_001087611.1 | hypothetical protein | VF |
| LC440_RS04655 (949357) | 949357..950805 | - | 1449 | WP_000772831.1 | NADP-dependent succinate-semialdehyde dehydrogenase | - |
| LC440_RS04660 (950828) | 950828..952096 | - | 1269 | WP_000271909.1 | L-2-hydroxyglutarate oxidase | - |
| LC440_RS04665 (952116) | 952116..953093 | - | 978 | WP_000993126.1 | glutarate dioxygenase GlaH | - |
| LC440_RS04670 (953429) | 953429..955681 | - | 2253 | Protein_909 | alpha-amylase family glycosyl hydrolase | - |
| LC440_RS04680 (957067) | 957067..958440 | + | 1374 | Protein_910 | DUF5507 domain-containing protein | - |
| LC440_RS04685 (958786) | 958786..958944 | + | 159 | Protein_911 | recombinase family protein | - |
| LC440_RS04690 (959168) | 959168..959287 | + | 120 | WP_001120794.1 | hypothetical protein | - |
| LC440_RS04695 (959435) | 959435..960643 | + | 1209 | WP_001339197.1 | IS4 family transposase IS10R | Transposase |
| LC440_RS04700 (960690) | 960690..965270 | + | 4581 | WP_010723187.1 | hypothetical protein | VF |
| LC440_RS04705 (965634) | 965634..965963 | - | 330 | WP_001094400.1 | type IV toxin-antitoxin system toxin YpjF | Toxin Detail |
| LC440_RS04710 (965984) | 965984..966301 | - | 318 | WP_000072690.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| LC440_RS04715 (966339) | 966339..966539 | - | 201 | WP_001395452.1 | DUF987 domain-containing protein | - |
| LC440_RS04720 (966548) | 966548..967030 | - | 483 | WP_001407480.1 | RadC family protein | - |
| LC440_RS04725 (967039) | 967039..967497 | - | 459 | WP_000211841.1 | antirestriction protein | - |
| LC440_RS04730 (967600) | 967600..967784 | - | 185 | Protein_920 | DUF905 domain-containing protein | - |
| LC440_RS04735 (968395) | 968395..970098 | - | 1704 | WP_000896263.1 | protein YfjW | - |
| LC440_RS04740 (970240) | 970240..971249 | + | 1010 | Protein_922 | arsenic transporter | - |
| LC440_RS04745 (971262) | 971262..971414 | + | 153 | Protein_923 | arsenate reductase | - |
| LC440_RS04750 (971801) | 971801..972268 | - | 468 | WP_000702495.1 | protein YfjT | - |
| LC440_RS04755 (972292) | 972292..972735 | - | 444 | WP_000824222.1 | lipoprotein YfjS | - |
| LC440_RS04760 (972735) | 972735..972971 | - | 237 | WP_001144029.1 | protein YpjK | - |
| LC440_RS04765 (973012) | 973012..973713 | - | 702 | WP_000189409.1 | WYL domain-containing protein | - |
| LC440_RS04770 (973930) | 973930..974751 | - | 822 | WP_000197391.1 | DUF932 domain-containing protein | - |
| LC440_RS04775 (974843) | 974843..975706 | - | 864 | WP_000787597.1 | GTPase family protein | - |
| LC440_RS04780 (976061) | 976061..976432 | - | 372 | WP_000461704.1 | type II toxin-antitoxin system antitoxin RnlB | Antitoxin Detail |
| LC440_RS04785 (976425) | 976425..977498 | - | 1074 | WP_000155570.1 | type II toxin-antitoxin system toxin mRNA endoribonuclease RnlA | Toxin Detail |
| LC440_RS04790 (977640) | 977640..977903 | + | 264 | WP_000502050.1 | DUF1524 domain-containing protein | - |
| LC440_RS04795 (978263) | 978263..979879 | + | 1617 | WP_000445380.1 | anti-bacteriophage protein AbpA | - |
| LC440_RS04800 (979876) | 979876..982065 | + | 2190 | WP_000136402.1 | DEAD/DEAH box helicase | - |
| LC440_RS04805 (982243) | 982243..982869 | - | 627 | WP_000220524.1 | inovirus Gp2 family protein | - |
| LC440_RS04810 (983022) | 983022..984431 | - | 1410 | WP_000481742.1 | YfjI family protein | - |
| LC440_RS04815 (984560) | 984560..984772 | - | 213 | WP_001065343.1 | DNA-binding transcriptional activator AlpA | - |
| LC440_RS04820 (984816) | 984816..985772 | + | 957 | WP_000510827.1 | protein YfjH | - |
| LC440_RS04825 (986016) | 986016..987257 | - | 1242 | WP_000101723.1 | hypothetical protein ; Integrase | Integrase |
| LC440_RS04835 (988038) | 988038..988520 | - | 483 | WP_000162574.1 | SsrA-binding protein SmpB | - |
| LC440_RS04840 (988691) | 988691..989128 | + | 438 | WP_001300750.1 | type II toxin-antitoxin system toxin RatA | - |
| LC440_RS04845 (989118) | 989118..989408 | + | 291 | WP_001117838.1 | RnfH family protein | - |
| LC440_RS04850 (989470) | 989470..989811 | - | 342 | WP_001203437.1 | outer membrane protein assembly factor BamE | - |
| LC440_RS04855 (989960) | 989960..991621 | - | 1662 | WP_000880910.1 | DNA repair protein RecN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|