MGE detailed information
MGE type: Prophage MGE length: 60850 bp
Accession: NZ_CP084026 Location: 3504752..3565601 Organism: Escherichia coli strain 035053C1pKPC2_Vir_090515B1 Replicon: chromosome
Accession: NZ_CP084026 Location: 3504752..3565601 Organism: Escherichia coli strain 035053C1pKPC2_Vir_090515B1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LC440_RS17240 (3499886) | 3499886..3500842 | + | 957 | WP_000643333.1 | aldehyde oxidoreductase FAD-binding subunit PaoB | - |
| LC440_RS17245 (3500839) | 3500839..3503037 | + | 2199 | WP_000667026.1 | aldehyde oxidoreductase molybdenum-binding subunit PaoC | - |
| LC440_RS17250 (3503047) | 3503047..3504003 | + | 957 | WP_000121359.1 | molybdenum cofactor insertion chaperone PaoD | - |
| LC440_RS17255 (3504054) | 3504054..3504392 | + | 339 | Protein_3374 | LysR substrate-binding domain-containing protein | - |
| LC440_RS17260 (3504677) | 3504677..3506077 | + | 1401 | WP_001407714.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| LC440_RS17265 (3506194) | 3506194..3506634 | + | 441 | WP_000224818.1 | protein YagN | - |
| LC440_RS17270 (3506631) | 3506631..3506855 | + | 225 | WP_001272156.1 | helix-turn-helix domain-containing protein | - |
| LC440_RS17275 (3506974) | 3506974..3507828 | + | 855 | WP_000072039.1 | protein YagM | - |
| LC440_RS17280 (3507855) | 3507855..3508553 | + | 699 | WP_001214248.1 | recombinase family protein | - |
| LC440_RS17285 (3508825) | 3508825..3509451 | + | 627 | WP_000860996.1 | inovirus Gp2 family protein | - |
| LC440_RS17290 (3509542) | 3509542..3510273 | - | 732 | WP_000388269.1 | protein YagJ | - |
| LC440_RS17295 (3510427) | 3510427..3511124 | + | 698 | WP_223293341.1 | IS1 family transposase IS1R | Transposase |
| LC440_RS17300 (3511141) | 3511141..3511344 | - | 204 | Protein_3383 | YfjI family protein | - |
| LC440_RS17305 (3511403) | 3511403..3511498 | + | 96 | WP_211180486.1 | putative translational regulatory protein ArgL | - |
| LC440_RS17310 (3511468) | 3511468..3512472 | + | 1005 | WP_001281825.1 | Ornithine carbamoyltransferase, catabolic | VF |
| LC440_RS17315 (3512611) | 3512611..3513369 | + | 759 | WP_001121657.1 | DNA-binding transcriptional repressor XynR | - |
| LC440_RS17320 (3513374) | 3513374..3514984 | - | 1611 | WP_000406871.1 | glycoside hydrolase family 43 protein | - |
| LC440_RS17325 (3514996) | 3514996..3516378 | - | 1383 | WP_000192863.1 | MFS transporter | - |
| LC440_RS17330 (3516605) | 3516605..3518572 | - | 1968 | WP_000151261.1 | xylonate dehydratase YagF | - |
| LC440_RS17335 (3518587) | 3518587..3519495 | - | 909 | WP_001136613.1 | 2-keto-3-deoxygluconate aldolase | - |
| LC440_RS17340 (3519790) | 3519790..3520944 | + | 1155 | WP_010723086.1 | IS481 family transposase ISEc19 | Transposase |
| LC440_RS17345 (3520959) | 3520959..3521024 | + | 66 | Protein_3392 | hypothetical protein | - |
| LC440_RS17350 (3521038) | 3521038..3521388 | + | 351 | WP_001030800.1 | type IV toxin-antitoxin system antitoxin YagB | - |
| LC440_RS17355 (3521411) | 3521411..3521659 | + | 249 | Protein_3394 | IS3 family transposase ISEhe3 | Transposase |
| LC440_RS17360 (3521669) | 3521669..3521842 | - | 174 | Protein_3395 | IS30 family transposase | - |
| LC440_RS17365 (3521898) | 3521898..3522595 | + | 698 | WP_223293341.1 | IS1 family transposase IS1R | Transposase |
| LC440_RS17370 (3522612) | 3522612..3522959 | + | 348 | Protein_3397 | ABC transporter permease subunit | - |
| LC440_RS17375 (3522971) | 3522971..3524017 | + | 1047 | WP_000192349.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| LC440_RS17380 (3524126) | 3524126..3525058 | - | 933 | WP_000081352.1 | homocysteine S-methyltransferase | - |
| LC440_RS17385 (3525045) | 3525045..3526448 | - | 1404 | WP_001393629.1 | S-methylmethionine permease | - |
| LC440_RS17390 (3526692) | 3526692..3527672 | + | 981 | WP_000019403.1 | IS5 family transposase IS5D | Transposase |
| LC440_RS17395 (3527891) | 3527891..3528946 | + | 1056 | WP_000749863.1 | phosphoporin PhoE | - |
| LC440_RS17400 (3528985) | 3528985..3529386 | - | 402 | WP_000174689.1 | sigma factor-binding protein Crl | - |
| - (3530104) | 3530104..3530184 | - | 81 | NuclAT_12 | - | - |
| - (3530104) | 3530104..3530184 | - | 81 | NuclAT_12 | - | - |
| - (3530104) | 3530104..3530184 | - | 81 | NuclAT_12 | - | - |
| - (3530104) | 3530104..3530184 | - | 81 | NuclAT_12 | - | - |
| LC440_RS17405 (3529444) | 3529444..3530688 | - | 1245 | WP_000189532.1 | esterase FrsA | - |
| LC440_RS17410 (3530780) | 3530780..3531238 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| LC440_RS17415 (3531499) | 3531499..3532956 | + | 1458 | WP_001292994.1 | cytosol nonspecific dipeptidase | - |
| LC440_RS17420 (3533013) | 3533013..3533534 | - | 522 | Protein_3407 | peptide chain release factor H | - |
| LC440_RS17425 (3533530) | 3533530..3533736 | - | 207 | Protein_3408 | RtcB family protein | - |
| LC440_RS17430 (3534054) | 3534054..3534506 | - | 453 | WP_001059892.1 | GNAT family N-acetyltransferase | - |
| LC440_RS17435 (3534516) | 3534516..3534914 | - | 399 | WP_001263489.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| LC440_RS17440 (3534917) | 3534917..3535210 | - | 294 | WP_000554758.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| LC440_RS17445 (3535262) | 3535262..3536317 | - | 1056 | WP_001226164.1 | DNA polymerase IV | - |
| LC440_RS17450 (3536388) | 3536388..3537173 | - | 786 | WP_000207552.1 | hypothetical protein | VF |
| LC440_RS17455 (3537145) | 3537145..3538857 | + | 1713 | Protein_3414 | hypothetical protein | VF |
| LC440_RS17460 (3539081) | 3539081..3539578 | - | 498 | WP_000006255.1 | REP-associated tyrosine transposase RayT | - |
| LC440_RS17465 (3539754) | 3539754..3540503 | - | 750 | WP_000056849.1 | hypothetical protein | VF |
| LC440_RS17470 (3540713) | 3540713..3540973 | + | 261 | WP_000729703.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin Detail |
| LC440_RS17475 (3540976) | 3540976..3541254 | + | 279 | WP_000615983.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin Detail |
| LC440_RS17480 (3541410) | 3541410..3542150 | + | 741 | WP_001225679.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| LC440_RS17485 (3542121) | 3542121..3542888 | - | 768 | WP_000333380.1 | class II glutamine amidotransferase | - |
| LC440_RS17490 (3543094) | 3543094..3543672 | - | 579 | WP_000284050.1 | Phosphoheptose isomerase | VF |
| LC440_RS17495 (3543912) | 3543912..3546356 | + | 2445 | WP_000973083.1 | Crotonobetainyl-CoA dehydrogenase | VF |
| LC440_RS17500 (3546399) | 3546399..3546845 | - | 447 | WP_001308392.1 | Ivy family C-type lysozyme inhibitor | - |
| LC440_RS17505 (3547026) | 3547026..3547796 | + | 771 | WP_001118036.1 | 2-oxoglutaramate amidase | - |
| LC440_RS17510 (3547837) | 3547837..3548115 | - | 279 | Protein_3425 | ISAs1 family transposase | - |
| LC440_RS17515 (3548113) | 3548113..3548469 | + | 357 | Protein_3426 | hypothetical protein | - |
| LC440_RS17520 (3548479) | 3548479..3548958 | + | 480 | WP_001236645.1 | protein YkfM | - |
| LC440_RS17525 (3549095) | 3549095..3549880 | - | 786 | WP_001086141.1 | lipoprotein | - |
| LC440_RS17535 (3550417) | 3550417..3551148 | - | 732 | WP_001340895.1 | DNA polymerase III subunit epsilon | - |
| LC440_RS17540 (3551213) | 3551213..3551680 | + | 468 | WP_000917883.1 | ribonuclease HI | - |
| LC440_RS17545 (3551677) | 3551677..3552399 | - | 723 | WP_001326702.1 | class I SAM-dependent methyltransferase | - |
| LC440_RS17550 (3552433) | 3552433..3553188 | + | 756 | WP_001052715.1 | hydroxyacylglutathione hydrolase | - |
| LC440_RS17555 (3553260) | 3553260..3554618 | + | 1359 | WP_000644685.1 | hypothetical protein | VF |
| LC440_RS17560 (3554666) | 3554666..3555262 | - | 597 | Protein_3434 | methyltransferase domain-containing protein | - |
| LC440_RS17565 (3555293) | 3555293..3556093 | - | 801 | WP_001230983.1 | endonuclease/exonuclease/phosphatase family protein | - |
| LC440_RS17570 (3556334) | 3556334..3557248 | + | 915 | WP_000648572.1 | HTH-type transcriptional regulator ArgP | VF |
| LC440_RS17575 (3557245) | 3557245..3558048 | - | 804 | WP_000997010.1 | 2,5-didehydrogluconate reductase DkgB | - |
| LC440_RS17610 (3563807) | 3563807..3564382 | - | 576 | WP_001140187.1 | Histidine biosynthesis bifunctional protein HisB | VF |
| LC440_RS17615 (3564570) | 3564570..3565601 | + | 1032 | WP_000594006.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| LC440_RS17620 (3565594) | 3565594..3566247 | + | 654 | WP_001294600.1 | methionine ABC transporter permease MetI | - |
| LC440_RS17625 (3566287) | 3566287..3567102 | + | 816 | WP_000874226.1 | methionine ABC transporter substrate-binding lipoprotein MetQ | - |
| LC440_RS17630 (3567220) | 3567220..3567624 | + | 405 | WP_001202329.1 | Rcs stress response system protein RcsF | - |
| LC440_RS17635 (3567621) | 3567621..3568328 | + | 708 | WP_000094011.1 | tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO | - |
| LC440_RS17640 (3568440) | 3568440..3570158 | + | 1719 | WP_001260717.1 | proline--tRNA ligase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|