MGE detailed information
MGE type: Prophage MGE length: 23494 bp
Accession: NZ_CP083990 Location: 2226787..2250280 Organism: Escherichia coli strain EC2648-Vir2 Replicon: chromosome
Accession: NZ_CP083990 Location: 2226787..2250280 Organism: Escherichia coli strain EC2648-Vir2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCH23_RS10690 (2222038) | 2222038..2222748 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| LCH23_RS10695 (2222751) | 2222751..2223311 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| LCH23_RS10700 (2223346) | 2223346..2223687 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| LCH23_RS10705 (2223822) | 2223822..2224148 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| LCH23_RS10710 (2224354) | 2224354..2225568 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| LCH23_RS10715 (2225580) | 2225580..2226599 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| LCH23_RS10720 (2226787) | 2226787..2227944 | - | 1158 | Protein_2104 | Putative defective protein IntQ ; Integrase | Integrase |
| LCH23_RS10725 (2227958) | 2227958..2228653 | - | 696 | Protein_2105 | IS3 family transposase IS2 | Transposase |
| LCH23_RS10730 (2228650) | 2228650..2229417 | - | 768 | Protein_2106 | exonuclease | - |
| LCH23_RS10735 (2229510) | 2229510..2229701 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| LCH23_RS10740 (2229698) | 2229698..2229886 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| LCH23_RS10745 (2230454) | 2230454..2230672 | - | 219 | WP_001171942.1 | protein YdfC | - |
| LCH23_RS23855 (2230702) | 2230702..2230830 | - | 129 | WP_000344964.1 | protein YdfB | - |
| LCH23_RS10750 (2230832) | 2230832..2230987 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| LCH23_RS10755 (2231154) | 2231154..2231561 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| LCH23_RS10760 (2231645) | 2231645..2231875 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| LCH23_RS10765 (2231859) | 2231859..2232137 | + | 279 | Protein_2114 | protein YdfX | - |
| LCH23_RS10770 (2232172) | 2232172..2232321 | + | 150 | WP_011443592.1 | protein YdfW | - |
| LCH23_RS10775 (2232758) | 2232758..2233090 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| LCH23_RS10780 (2233293) | 2233293..2233598 | - | 306 | WP_001326990.1 | protein YdfV | - |
| LCH23_RS10785 (2233623) | 2233623..2233862 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| LCH23_RS10790 (2233862) | 2233862..2234149 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| LCH23_RS10795 (2234221) | 2234221..2234376 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| LCH23_RS10800 (2234593) | 2234593..2234844 | + | 252 | WP_000980994.1 | protein Rem | - |
| LCH23_RS10805 (2234911) | 2234911..2235189 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| LCH23_RS10810 (2235191) | 2235191..2236240 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| LCH23_RS10815 (2236254) | 2236254..2237006 | + | 753 | WP_001047135.1 | antitermination protein | - |
| LCH23_RS10820 (2237284) | 2237284..2237373 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| LCH23_RS10825 (2237428) | 2237428..2237640 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| LCH23_RS10830 (2237941) | 2237941..2238156 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| LCH23_RS10835 (2238520) | 2238520..2238690 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| LCH23_RS10840 (2238910) | 2238910..2239125 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| LCH23_RS10845 (2239130) | 2239130..2239441 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| LCH23_RS10850 (2239438) | 2239438..2239971 | + | 534 | WP_001092971.1 | lysozyme | - |
| LCH23_RS10855 (2239968) | 2239968..2240465 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| LCH23_RS10860 (2240828) | 2240828..2241040 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| LCH23_RS10865 (2241051) | 2241051..2241239 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| LCH23_RS10870 (2241242) | 2241242..2241307 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| LCH23_RS10875 (2241386) | 2241386..2241541 | + | 156 | WP_001309517.1 | protein YnfN | - |
| LCH23_RS10880 (2241713) | 2241713..2241886 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| LCH23_RS10885 (2242038) | 2242038..2242448 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| LCH23_RS10890 (2242506) | 2242506..2242739 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| LCH23_RS10895 (2243128) | 2243128..2243697 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| LCH23_RS10900 (2243648) | 2243648..2244610 | + | 963 | WP_001027733.1 | phage tail protein | - |
| LCH23_RS10905 (2244610) | 2244610..2245185 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| LCH23_RS10910 (2245283) | 2245283..2245873 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| LCH23_RS10915 (2246190) | 2246190..2246423 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| LCH23_RS10920 (2246492) | 2246492..2246605 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| LCH23_RS10925 (2247126) | 2247126..2248493 | + | 1368 | Protein_2146 | MHS family MFS transporter | - |
| LCH23_RS10930 (2248582) | 2248582..2250042 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| LCH23_RS10935 (2250077) | 2250077..2250280 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| LCH23_RS10940 (2250457) | 2250457..2251143 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| LCH23_RS10945 (2251232) | 2251232..2251978 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| LCH23_RS10950 (2252115) | 2252115..2254160 | + | 2046 | WP_000210373.1 | peptidyl-dipeptidase Dcp | - |
| LCH23_RS10955 (2254204) | 2254204..2254722 | - | 519 | WP_001024746.1 | 2-oxo-tetronate isomerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.004 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0.002 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.005 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.004 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0.002 |