MGE detailed information
MGE type: Prophage MGE length: 106789 bp
Accession: NZ_CP083886 Location: 3593144..3699932 Organism: Escherichia coli strain NDM2 Replicon: chromosome
Accession: NZ_CP083886 Location: 3593144..3699932 Organism: Escherichia coli strain NDM2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCE23_RS18225 (3590443) | 3590443..3590532 | + | 90 | Protein_3376 | hypothetical protein | - |
| LCE23_RS18230 (3591006) | 3591006..3591107 | + | 102 | WP_000662258.1 | small membrane protein YkgR | - |
| LCE23_RS18235 (3591471) | 3591471..3591734 | + | 264 | WP_000803998.1 | type B 50S ribosomal protein L31 | - |
| LCE23_RS18240 (3591734) | 3591734..3591874 | + | 141 | WP_000866436.1 | type B 50S ribosomal protein L36 | - |
| LCE23_RS18245 (3591909) | 3591909..3592136 | - | 228 | WP_001147279.1 | protein YkgL | - |
| LCE23_RS18250 (3592960) | 3592960..3593127 | + | 168 | Protein_3381 | ECP biosynthesis operon DNA-binding transcriptional regulator EcpR | - |
| LCE23_RS18260 (3593899) | 3593899..3594279 | + | 381 | Protein_3383 | hypothetical protein | VF |
| LCE23_RS18265 (3594354) | 3594354..3594941 | + | 588 | WP_000730972.1 | hypothetical protein | VF |
| LCE23_RS18270 (3594999) | 3594999..3595667 | + | 669 | WP_000716398.1 | hypothetical protein | VF |
| LCE23_RS18275 (3595693) | 3595693..3598218 | + | 2526 | WP_001131096.1 | hypothetical protein | VF |
| LCE23_RS18280 (3598208) | 3598208..3599851 | + | 1644 | WP_001310578.1 | hypothetical protein | VF |
| LCE23_RS18285 (3599820) | 3599820..3600530 | + | 711 | WP_001350485.1 | hypothetical protein | VF |
| LCE23_RS18290 (3600843) | 3600843..3601172 | + | 330 | WP_001303809.1 | YkgJ family cysteine cluster protein | - |
| LCE23_RS18295 (3601420) | 3601420..3602034 | - | 615 | WP_001019920.1 | YagU family protein | - |
| LCE23_RS18300 (3602452) | 3602452..3603141 | + | 690 | WP_000070700.1 | aldehyde dehydrogenase iron-sulfur subunit PaoA | - |
| LCE23_RS18305 (3603138) | 3603138..3604094 | + | 957 | WP_000643333.1 | aldehyde oxidoreductase FAD-binding subunit PaoB | - |
| LCE23_RS18310 (3604091) | 3604091..3606289 | + | 2199 | WP_000667026.1 | aldehyde oxidoreductase molybdenum-binding subunit PaoC | - |
| LCE23_RS18315 (3606299) | 3606299..3607255 | + | 957 | WP_000121359.1 | molybdenum cofactor insertion chaperone PaoD | - |
| LCE23_RS18320 (3607306) | 3607306..3607644 | + | 339 | Protein_3395 | LysR substrate-binding domain-containing protein | - |
| LCE23_RS18325 (3608083) | 3608083..3609210 | + | 1128 | WP_023342982.1 | hypothetical protein | - |
| LCE23_RS18330 (3609302) | 3609302..3610801 | + | 1500 | WP_040088523.1 | SIR2 family protein | - |
| LCE23_RS18335 (3611245) | 3611245..3611742 | - | 498 | WP_064767695.1 | DNA-binding protein | - |
| LCE23_RS18340 (3611777) | 3611777..3612571 | - | 795 | WP_061363491.1 | hypothetical protein | - |
| LCE23_RS18345 (3612568) | 3612568..3612741 | - | 174 | WP_017880052.1 | hypothetical protein | - |
| LCE23_RS18350 (3613145) | 3613145..3614908 | - | 1764 | WP_061363492.1 | primase-like DNA-binding domain-containing protein | - |
| LCE23_RS18355 (3614905) | 3614905..3615219 | - | 315 | WP_017880049.1 | DUF4222 domain-containing protein | - |
| LCE23_RS18360 (3615230) | 3615230..3615433 | - | 204 | WP_020802561.1 | hypothetical protein | - |
| LCE23_RS18365 (3615430) | 3615430..3615645 | - | 216 | WP_017880047.1 | hypothetical protein | - |
| LCE23_RS18370 (3615642) | 3615642..3616517 | - | 876 | WP_021312336.1 | hypothetical protein ; Integrase | Integrase |
| LCE23_RS18375 (3616510) | 3616510..3616755 | - | 246 | WP_020802552.1 | host cell division inhibitor Icd-like protein | - |
| LCE23_RS24085 (3616803) | 3616803..3616991 | - | 189 | Protein_3407 | ash family protein | - |
| LCE23_RS18385 (3617227) | 3617227..3617424 | - | 198 | WP_045339018.1 | AlpA family transcriptional regulator | - |
| LCE23_RS18390 (3617592) | 3617592..3618182 | - | 591 | WP_020802548.1 | hypothetical protein | - |
| LCE23_RS18395 (3618251) | 3618251..3619465 | - | 1215 | WP_004191833.1 | hypothetical protein ; Integrase | Integrase |
| LCE23_RS18400 (3620057) | 3620057..3620197 | + | 141 | Protein_3411 | SOS response-associated peptidase | - |
| LCE23_RS18405 (3620425) | 3620425..3621270 | + | 846 | WP_001619161.1 | AAA family ATPase | - |
| LCE23_RS18410 (3621263) | 3621263..3621661 | + | 399 | WP_001041461.1 | hypothetical protein | - |
| LCE23_RS18415 (3621661) | 3621661..3622326 | + | 666 | WP_000957441.1 | hypothetical protein | - |
| LCE23_RS18420 (3622364) | 3622364..3622745 | - | 382 | Protein_3415 | DUF4113 domain-containing protein | - |
| LCE23_RS18425 (3622743) | 3622743..3622826 | + | 84 | Protein_3416 | DinI family protein | - |
| LCE23_RS18430 (3623257) | 3623257..3625146 | + | 1890 | WP_000834404.1 | DUF262 domain-containing protein | - |
| LCE23_RS18435 (3625248) | 3625248..3625331 | - | 84 | Protein_3418 | hypothetical protein | - |
| LCE23_RS18440 (3625574) | 3625574..3625744 | + | 171 | Protein_3419 | integrase | - |
| LCE23_RS18445 (3625749) | 3625749..3626567 | - | 819 | WP_223675306.1 | hypothetical protein | - |
| LCE23_RS18450 (3626839) | 3626839..3630579 | - | 3741 | WP_224446729.1 | prophage tail fiber N-terminal domain-containing protein | - |
| LCE23_RS18455 (3630638) | 3630638..3631237 | - | 600 | WP_061363451.1 | hypothetical protein | VF |
| LCE23_RS18460 (3631304) | 3631304..3634702 | - | 3399 | WP_061363450.1 | host specificity protein J | - |
| LCE23_RS18465 (3634763) | 3634763..3635365 | - | 603 | WP_122991788.1 | tail assembly protein | - |
| LCE23_RS18470 (3635302) | 3635302..3636045 | - | 744 | WP_061363449.1 | C40 family peptidase | - |
| LCE23_RS18475 (3636051) | 3636051..3636749 | - | 699 | WP_032271385.1 | phage minor tail protein L | - |
| LCE23_RS18480 (3636749) | 3636749..3637078 | - | 330 | WP_000847352.1 | phage tail protein | - |
| LCE23_RS18485 (3637075) | 3637075..3639636 | - | 2562 | WP_000840239.1 | phage tail tape measure protein | - |
| LCE23_RS18490 (3639629) | 3639629..3640063 | - | 435 | WP_000459458.1 | phage tail assembly protein T | - |
| LCE23_RS18495 (3640045) | 3640045..3640467 | - | 423 | WP_000479155.1 | phage minor tail protein G | - |
| LCE23_RS18500 (3640483) | 3640483..3641223 | - | 741 | WP_001446995.1 | phage tail protein | - |
| LCE23_RS18505 (3641231) | 3641231..3641626 | - | 396 | WP_000683105.1 | phage minor tail U family protein | - |
| LCE23_RS18510 (3641623) | 3641623..3642201 | - | 579 | WP_211033955.1 | phage tail protein | - |
| LCE23_RS18515 (3642213) | 3642213..3642566 | - | 354 | WP_000753001.1 | head-tail joining protein | - |
| LCE23_RS18520 (3642578) | 3642578..3642973 | - | 396 | WP_000158886.1 | DNA-packaging protein FI | - |
| LCE23_RS18525 (3643015) | 3643015..3644040 | - | 1026 | WP_000063273.1 | major capsid protein | - |
| LCE23_RS18530 (3644096) | 3644096..3644428 | - | 333 | WP_001380322.1 | head decoration protein | - |
| LCE23_RS18535 (3644438) | 3644438..3645757 | - | 1320 | WP_000123280.1 | S49 family peptidase | - |
| LCE23_RS18540 (3645738) | 3645738..3647339 | - | 1602 | WP_001446996.1 | phage portal protein | - |
| LCE23_RS18545 (3647336) | 3647336..3647542 | - | 207 | WP_000198149.1 | gpW family protein | - |
| LCE23_RS18550 (3647539) | 3647539..3649464 | - | 1926 | WP_001027290.1 | phage terminase large subunit family protein | - |
| LCE23_RS18555 (3649439) | 3649439..3649984 | - | 546 | WP_000453576.1 | DNA-packaging protein | - |
| LCE23_RS18560 (3650373) | 3650373..3650606 | + | 234 | WP_001663509.1 | YlcI/YnfO family protein | - |
| LCE23_RS18565 (3650663) | 3650663..3651073 | + | 411 | WP_000079508.1 | DUF1398 family protein | - |
| LCE23_RS18570 (3651424) | 3651424..3651576 | - | 153 | WP_001139678.1 | hypothetical protein | - |
| LCE23_RS18575 (3651564) | 3651564..3652001 | - | 438 | WP_001446997.1 | lysis protein | - |
| LCE23_RS18580 (3651998) | 3651998..3652474 | - | 477 | WP_001197767.1 | glycoside hydrolase family protein | - |
| LCE23_RS18585 (3652478) | 3652478..3652813 | - | 336 | WP_001120502.1 | phage holin, lambda family | - |
| LCE23_RS18590 (3652890) | 3652890..3653942 | - | 1053 | WP_021548833.1 | site-specific DNA-methyltransferase | - |
| LCE23_RS18595 (3654093) | 3654093..3654380 | - | 288 | WP_223675311.1 | hypothetical protein | - |
| LCE23_RS18600 (3655852) | 3655852..3655853 | - | 2 | WP_165696029.1 | IS3 family transposase IS2 | Transposase |
| LCE23_RS18605 (3656263) | 3656263..3656841 | + | 579 | WP_224446730.1 | hypothetical protein | - |
| LCE23_RS18610 (3656863) | 3656863..3657312 | + | 450 | WP_001208502.1 | hypothetical protein | - |
| LCE23_RS18615 (3657348) | 3657348..3657716 | - | 369 | WP_085949407.1 | antiterminator Q family protein | - |
| LCE23_RS18620 (3657731) | 3657731..3658720 | - | 990 | WP_001571227.1 | DUF968 domain-containing protein | - |
| LCE23_RS18625 (3658728) | 3658728..3659525 | - | 798 | WP_001061412.1 | KilA-N domain-containing protein | - |
| LCE23_RS18630 (3659545) | 3659545..3659934 | - | 390 | WP_061363473.1 | RusA family crossover junction endodeoxyribonuclease | - |
| LCE23_RS18635 (3659931) | 3659931..3660257 | - | 327 | WP_000210148.1 | LexA family transcriptional regulator | - |
| LCE23_RS18640 (3660257) | 3660257..3660751 | - | 495 | WP_001573323.1 | PerC family transcriptional regulator | - |
| LCE23_RS18645 (3660748) | 3660748..3661704 | - | 957 | WP_000104985.1 | helix-turn-helix domain-containing protein | - |
| LCE23_RS18650 (3661694) | 3661694..3661873 | - | 180 | WP_001250269.1 | DUF4222 domain-containing protein | - |
| LCE23_RS18655 (3662049) | 3662049..3662600 | - | 552 | WP_224446731.1 | protein YmfL | - |
| LCE23_RS18660 (3662638) | 3662638..3662838 | - | 201 | WP_000205494.1 | Cro/CI family transcriptional regulator | - |
| LCE23_RS18665 (3662936) | 3662936..3663562 | + | 627 | WP_000450738.1 | LexA family transcriptional regulator | - |
| LCE23_RS18670 (3663790) | 3663790..3664305 | - | 516 | WP_000559916.1 | hypothetical protein | - |
| LCE23_RS18675 (3664450) | 3664450..3664760 | + | 311 | Protein_3466 | hypothetical protein | - |
| LCE23_RS18680 (3664775) | 3664775..3665137 | + | 363 | WP_000135682.1 | protein YfdP | - |
| LCE23_RS18685 (3665203) | 3665203..3666027 | + | 825 | WP_096058035.1 | DUF2303 family protein | - |
| LCE23_RS18690 (3666155) | 3666155..3666691 | + | 537 | WP_000008200.1 | 5'-deoxynucleotidase | - |
| LCE23_RS18695 (3666682) | 3666682..3667044 | + | 363 | WP_001242749.1 | phage protein | - |
| LCE23_RS18700 (3667044) | 3667044..3667349 | + | 306 | WP_000206734.1 | protein YfdT | - |
| LCE23_RS18705 (3667349) | 3667349..3667699 | + | 351 | WP_000433939.1 | helix-turn-helix domain-containing protein | - |
| LCE23_RS18710 (3667621) | 3667621..3668739 | + | 1119 | WP_224446747.1 | hypothetical protein ; Integrase | Integrase |
| LCE23_RS18720 (3668944) | 3668944..3670197 | - | 1254 | WP_000893278.1 | glutamate-5-semialdehyde dehydrogenase | - |
| LCE23_RS18725 (3670209) | 3670209..3671312 | - | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| LCE23_RS18730 (3671600) | 3671600..3672655 | + | 1056 | WP_000749867.1 | phosphoporin PhoE | - |
| LCE23_RS18735 (3672694) | 3672694..3673095 | - | 402 | WP_000174677.1 | sigma factor-binding protein Crl | - |
| - (3673813) | 3673813..3673893 | - | 81 | NuclAT_8 | - | - |
| - (3673813) | 3673813..3673893 | - | 81 | NuclAT_8 | - | - |
| - (3673813) | 3673813..3673893 | - | 81 | NuclAT_8 | - | - |
| - (3673813) | 3673813..3673893 | - | 81 | NuclAT_8 | - | - |
| LCE23_RS18740 (3673153) | 3673153..3674397 | - | 1245 | WP_000189532.1 | esterase FrsA | - |
| LCE23_RS18745 (3674489) | 3674489..3674947 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| LCE23_RS18750 (3675208) | 3675208..3676665 | + | 1458 | WP_001292994.1 | cytosol nonspecific dipeptidase | - |
| LCE23_RS18755 (3676722) | 3676722..3677243 | - | 522 | Protein_3481 | peptide chain release factor H | - |
| LCE23_RS18760 (3677239) | 3677239..3677445 | - | 207 | Protein_3482 | RtcB family protein | - |
| LCE23_RS18765 (3677763) | 3677763..3678215 | - | 453 | WP_001059892.1 | GNAT family N-acetyltransferase | - |
| LCE23_RS18770 (3678225) | 3678225..3678623 | - | 399 | WP_001263489.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| LCE23_RS18775 (3678626) | 3678626..3678919 | - | 294 | WP_000554758.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| LCE23_RS18780 (3678971) | 3678971..3680026 | - | 1056 | WP_001226164.1 | DNA polymerase IV | - |
| LCE23_RS18785 (3680097) | 3680097..3680882 | - | 786 | WP_000207552.1 | hypothetical protein | VF |
| LCE23_RS18790 (3680854) | 3680854..3682566 | + | 1713 | Protein_3488 | hypothetical protein | VF |
| LCE23_RS18795 (3682790) | 3682790..3683287 | - | 498 | WP_000006255.1 | REP-associated tyrosine transposase RayT | - |
| LCE23_RS18800 (3683463) | 3683463..3684212 | - | 750 | WP_000056849.1 | hypothetical protein | VF |
| LCE23_RS18805 (3684422) | 3684422..3684682 | + | 261 | WP_000729703.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin Detail |
| LCE23_RS18810 (3684685) | 3684685..3684963 | + | 279 | WP_000615983.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin Detail |
| LCE23_RS18815 (3685119) | 3685119..3685859 | + | 741 | WP_001225679.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| LCE23_RS18820 (3685830) | 3685830..3686597 | - | 768 | WP_000333380.1 | class II glutamine amidotransferase | - |
| LCE23_RS18825 (3686803) | 3686803..3687381 | - | 579 | WP_000284050.1 | hypothetical protein | VF |
| LCE23_RS18830 (3687621) | 3687621..3690065 | + | 2445 | WP_000973083.1 | hypothetical protein | VF |
| LCE23_RS18835 (3690108) | 3690108..3690554 | - | 447 | WP_001308392.1 | Ivy family C-type lysozyme inhibitor | - |
| LCE23_RS18840 (3690735) | 3690735..3691505 | + | 771 | WP_001118036.1 | 2-oxoglutaramate amidase | - |
| LCE23_RS18845 (3691546) | 3691546..3692682 | - | 1137 | WP_000420818.1 | ISAs1 family transposase ISEc1 | Transposase |
| LCE23_RS18850 (3693113) | 3693113..3693505 | - | 393 | WP_001101839.1 | hypothetical protein | - |
| LCE23_RS18855 (3693483) | 3693483..3697715 | - | 4233 | WP_000508724.1 | hypothetical protein | VF |
| LCE23_RS18860 (3697791) | 3697791..3699932 | - | 2142 | WP_000103354.1 | hypothetical protein | VF |
| LCE23_RS18865 (3700142) | 3700142..3700660 | - | 519 | WP_001142958.1 | Hcp family type VI secretion system effector | - |
| LCE23_RS18870 (3701355) | 3701355..3701855 | + | 501 | WP_000037397.1 | type VI secretion system contractile sheath small subunit | - |
| LCE23_RS18875 (3701890) | 3701890..3702114 | + | 225 | WP_000123970.1 | hypothetical protein | - |
| LCE23_RS18880 (3702165) | 3702165..3703640 | + | 1476 | WP_000056989.1 | type VI secretion system contractile sheath large subunit | - |
| LCE23_RS18885 (3703647) | 3703647..3704060 | + | 414 | WP_000611744.1 | type VI secretion system baseplate subunit TssE | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|