MGE detailed information
MGE type: Genomic_island MGE length: 8788 bp
Accession: NZ_CP083869 Location: 4244896..4253683 Organism: Escherichia coli strain NDM6 Replicon: chromosome
Accession: NZ_CP083869 Location: 4244896..4253683 Organism: Escherichia coli strain NDM6 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCE24_RS21945 (4240957) | 4240957..4241258 | + | 302 | Protein_4023 | divalent cation tolerance protein CutA | - |
| LCE24_RS21950 (4241234) | 4241234..4242929 | + | 1696 | Protein_4024 | protein-disulfide reductase DsbD | - |
| LCE24_RS21955 (4242966) | 4242966..4243541 | + | 576 | WP_001188520.1 | transcriptional regulator | - |
| LCE24_RS21975 (4244340) | 4244340..4245876 | + | 1537 | Protein_4026 | lysine decarboxylation/transport transcriptional activator CadC | - |
| LCE24_RS21980 (4246241) | 4246241..4247575 | + | 1335 | Protein_4027 | cadaverine/lysine antiporter | - |
| LCE24_RS21985 (4247655) | 4247655..4249802 | + | 2148 | WP_001295383.1 | lysine decarboxylase CadA | - |
| LCE24_RS21990 (4249858) | 4249858..4251315 | + | 1458 | WP_000856829.1 | dipeptide/tripeptide permease DtpC | - |
| LCE24_RS21995 (4251552) | 4251552..4253069 | + | 1518 | WP_001295074.1 | lysine--tRNA ligase | - |
| LCE24_RS22000 (4253174) | 4253174..4253359 | - | 186 | WP_089514152.1 | type V toxin-antitoxin system toxin GhoT | Toxin Detail |
| LCE24_RS22005 (4253387) | 4253387..4253683 | - | 297 | WP_000398619.1 | type V toxin-antitoxin system endoribonuclease antitoxin GhoS | Antitoxin Detail |
| LCE24_RS22010 (4253909) | 4253909..4254181 | - | 273 | WP_000405651.1 | GNAT family N-acetyltransferase | - |
| LCE24_RS22015 (4254193) | 4254193..4254423 | - | 231 | WP_000371704.1 | 4Fe-4S mono-cluster protein YjdI | - |
| LCE24_RS22020 (4254604) | 4254604..4256234 | + | 1631 | Protein_4035 | sensor histidine kinase | - |
| LCE24_RS22025 (4256231) | 4256231..4256950 | + | 720 | WP_224452708.1 | two-component system response regulator DcuR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20087 | HG738867 | 4238430..4247780 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21458 | NC_007779 | 4357262..4366612 | 0.002 | |
| Escherichia coli BW2952 | Genomic island | TA23874 | NC_012759 | 4289342..4298692 | 0.002 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285032 | NZ_HG738867 | 4238430..4247780 | 0.002 |