NZ_CP0838692315905..2328714

MGE detailed information

MGE type: Genomic_island        MGE length: 12810 bp
Accession: NZ_CP083869        Location: 2315905..2328714         Organism: Escherichia coli strain NDM6       Replicon: chromosome


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LCE24_RS12540 (2315905) 2315905..2316171 + 267 WP_001301023.1 type II toxin-antitoxin system antitoxin HipB Antitoxin Detail
LCE24_RS12545 (2316171) 2316171..2317493 + 1323 WP_001125439.1 type II toxin-antitoxin system serine/threonine protein kinase toxin HipA Toxin Detail
LCE24_RS12550 (2317805) 2317805..2318013 + 209 Protein_2188 AraC family transcriptional regulator -
LCE24_RS12555 (2318268) 2318268..2319494 + 1227 Protein_2189 Outer membrane usher protein FimD VF
LCE24_RS12560 (2319508) 2319508..2320038 + 531 WP_000876763.1 Protein FimF VF
LCE24_RS12565 (2320051) 2320051..2320554 + 504 WP_000825452.1 Protein FimG VF
LCE24_RS12570 (2320613) 2320613..2321527 + 915 WP_000520662.1 Type 1 fimbrin D-mannose specific adhesin VF
LCE24_RS12575 (2321861) 2321861..2324140 + 2280 WP_000726691.1 acid resistance putative oxidoreductase YdeP -
LCE24_RS12580 (2324388) 2324388..2324585 + 198 WP_000543384.1 two-component system connector SafA -
LCE24_RS12585 (2324660) 2324660..2325421 + 762 WP_187765411.1 acid stress response transcriptional regulator YdeO -
LCE24_RS12590 (2325823) 2325823..2327505 + 1683 WP_001295684.1 sulfatase -
LCE24_RS12595 (2327557) 2327557..2328714 + 1158 WP_001301030.1 anaerobic sulfatase maturase -
LCE24_RS12600 (2328680) 2328680..2328802 - 123 WP_120795387.1 protein YneP -
LCE24_RS12605 (2329005) 2329005..2330690 + 1686 WP_000628576.1 ABC transporter ATP-binding protein/permease -
LCE24_RS12610 (2330728) 2330728..2333100 + 2373 WP_000832437.1 TonB-dependent receptor plug domain-containing protein -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance
Escherichia coli K-12 strain ER3413 Genomic island TA20025 CP009789 1561271..1572871 0.003
Escherichia coli str. K-12 substr. MC4100 Genomic island TA20066 HG738867 1469371..1480971 0.003
Escherichia coli str. K-12 substr. MG1655 Genomic island TA1040 NC_000913 1580842..1592442 0.003
Escherichia coli str. K-12 substr. W3110 Genomic island TA21437 NC_007779 1582556..1594156 0.003
Escherichia coli HS Genomic island TA22421 NC_009800 1597665..1609265 0.005
Escherichia coli str. K-12 substr. DH10B Genomic island TA22685 NC_010473 1669461..1680091 0.006
Escherichia coli BW2952 Genomic island TA23853 NC_012759 1470925..1482525 0.003
Escherichia coli DH1 Genomic island TA27403 NC_017638 1563024..1574624 0.003
Escherichia coli str. K-12 substr. MDS42 Genomic island TA29002 NC_020518 1287669..1299269 0.003
Escherichia coli BW25113 Genomic island TA48682 NZ_CP009273 1575099..1586699 0.003
Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 Genomic island TA68424 NZ_CP017979 1484612..1496212 0.003
Escherichia coli strain DH5alpha Genomic island TA90478 NZ_CP025520 438284..449884 0.004
Escherichia coli str. K-12 substr. MC4100 strain K-12 Genomic island TA285016 NZ_HG738867 1469371..1480971 0.003