MGE detailed information
MGE type: Conjugative plasmid MGE length: 130873 bp
Accession: NZ_CP083499 Location: 1..130873 Organism: Escherichia coli strain elppa6 Replicon: plasmid unnamed2
Accession: NZ_CP083499 Location: 1..130873 Organism: Escherichia coli strain elppa6 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K9U09_RS23430 (292) | 292..1194 | + | 903 | WP_072748701.1 | DUF1281 domain-containing protein | - |
| K9U09_RS23435 (1191) | 1191..1502 | + | 312 | WP_032072582.1 | hypothetical protein | - |
| K9U09_RS23440 (1579) | 1579..2262 | + | 684 | WP_000086147.1 | DNA methylase | - |
| K9U09_RS23445 (2263) | 2263..2484 | + | 222 | WP_001104881.1 | hypothetical protein | - |
| K9U09_RS23450 (2498) | 2498..2932 | + | 435 | WP_000274500.1 | DUF1380 family protein | - |
| K9U09_RS23455 (2978) | 2978..3754 | + | 777 | WP_001005023.1 | hypothetical protein | - |
| K9U09_RS23460 (4166) | 4166..4591 | + | 426 | WP_001579750.1 | antirestriction protein | - |
| K9U09_RS23465 (4638) | 4638..5060 | + | 423 | WP_000271744.1 | DUF1380 family protein | - |
| K9U09_RS23470 (5057) | 5057..5248 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| K9U09_RS23475 (5319) | 5319..5633 | + | 315 | WP_001434357.1 | hypothetical protein | - |
| K9U09_RS23480 (6017) | 6017..6544 | + | 528 | WP_001276107.1 | single-stranded DNA-binding protein | - |
| K9U09_RS23485 (6602) | 6602..6835 | + | 234 | WP_000006020.1 | DUF905 domain-containing protein | - |
| K9U09_RS23490 (6894) | 6894..8852 | + | 1959 | WP_001145485.1 | ParB/RepB/Spo0J family partition protein | - |
| K9U09_RS23495 (8907) | 8907..9341 | + | 435 | WP_001387500.1 | conjugation system SOS inhibitor PsiB | - |
| K9U09_RS23500 (9338) | 9338..10057 | + | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
| K9U09_RS23505 (10054) | 10054..10650 | + | 597 | Protein_15 | hypothetical protein | - |
| K9U09_RS23510 (11112) | 11112..11612 | + | 501 | WP_000117611.1 | antirestriction protein ArdA | - |
| K9U09_RS23515 (12341) | 12341..12775 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| K9U09_RS23520 (12869) | 12869..13135 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| K9U09_RS23525 (13200) | 13200..14126 | + | 927 | WP_000038402.1 | Recombination-promoting nuclease RpnA | VF |
| K9U09_RS23530 (14149) | 14149..14346 | + | 198 | WP_001348086.1 | hypothetical protein | - |
| K9U09_RS23535 (14377) | 14377..14628 | - | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| K9U09_RS23540 (15208) | 15208..16056 | + | 849 | WP_001077023.1 | DUF4942 domain-containing protein | - |
| K9U09_RS23545 (16142) | 16142..16477 | - | 336 | WP_000157098.1 | hypothetical protein | - |
| K9U09_RS23550 (16718) | 16718..17050 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| K9U09_RS23555 (17061) | 17061..19760 | + | 2700 | WP_011264053.1 | Protein TraI | Relaxase |
| K9U09_RS23560 (19797) | 19797..22088 | - | 2292 | WP_011264051.1 | F-type conjugative transfer protein TrbC | - |
| K9U09_RS23565 (22081) | 22081..23151 | - | 1071 | WP_011264050.1 | IncI1-type conjugal transfer protein TrbB | - |
| K9U09_RS23570 (23170) | 23170..24378 | - | 1209 | WP_011264049.1 | IncI1-type conjugal transfer protein TrbA | - |
| - (24558) | 24558..24615 | - | 58 | NuclAT_1 | - | - |
| - (24558) | 24558..24615 | - | 58 | NuclAT_1 | - | - |
| - (24558) | 24558..24615 | - | 58 | NuclAT_1 | - | - |
| - (24558) | 24558..24615 | - | 58 | NuclAT_1 | - | - |
| K9U09_RS23575 (24685) | 24685..25467 | - | 783 | WP_023063753.1 | protein FinQ | - |
| K9U09_RS23580 (25663) | 25663..25980 | + | 318 | WP_000118520.1 | quaternary ammonium compound efflux SMR transporter SugE | - |
| K9U09_RS23585 (25977) | 25977..26510 | - | 534 | WP_001221666.1 | lipocalin family protein | - |
| K9U09_RS23590 (26604) | 26604..27749 | - | 1146 | WP_000976514.1 | Beta-lactamase | ARG |
| K9U09_RS23595 (28073) | 28073..29335 | - | 1263 | WP_228596877.1 | IS1380 family transposase ISEcp1 | Transposase |
| K9U09_RS23600 (29488) | 29488..29862 | - | 375 | WP_223349261.1 | hypothetical protein | - |
| - (30071) | 30071..30131 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (30071) | 30071..30131 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (30071) | 30071..30131 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (30071) | 30071..30131 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| K9U09_RS23605 (30183) | 30183..30335 | + | 153 | WP_001387489.1 | Hok/Gef family protein | Toxin Detail |
| K9U09_RS23610 (30407) | 30407..30658 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| K9U09_RS23615 (30958) | 30958..31254 | + | 297 | WP_011264046.1 | DinQ-like type I toxin DqlB | - |
| K9U09_RS23620 (31319) | 31319..31495 | - | 177 | WP_001054897.1 | hypothetical protein | - |
| K9U09_RS23625 (31888) | 31888..32097 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| K9U09_RS23630 (32169) | 32169..32831 | - | 663 | WP_000644796.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| K9U09_RS23635 (32902) | 32902..35070 | - | 2169 | WP_228596879.1 | DotA/TraY family protein | - |
| K9U09_RS23640 (35167) | 35167..35751 | - | 585 | WP_001746157.1 | IncI1-type conjugal transfer protein TraX | - |
| K9U09_RS23645 (35780) | 35780..36982 | - | 1203 | WP_001189160.1 | IncI1-type conjugal transfer protein TraW | - |
| K9U09_RS23650 (36949) | 36949..37563 | - | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| K9U09_RS23655 (37563) | 37563..40607 | - | 3045 | WP_023518848.1 | IncI1-type conjugal transfer protein TraU | - |
| K9U09_RS23660 (40697) | 40697..41497 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| K9U09_RS23665 (41481) | 41481..41669 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| K9U09_RS23670 (41733) | 41733..42137 | - | 405 | WP_000086965.1 | IncI1-type conjugal transfer protein TraR | - |
| K9U09_RS23675 (42188) | 42188..42715 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| K9U09_RS23680 (42715) | 42715..43419 | - | 705 | WP_001493811.1 | IncI1-type conjugal transfer protein TraP | - |
| K9U09_RS23685 (43419) | 43419..44708 | - | 1290 | WP_228596881.1 | conjugal transfer protein TraO | - |
| K9U09_RS23690 (44711) | 44711..45694 | - | 984 | WP_001191878.1 | hypothetical protein | VF |
| K9U09_RS23695 (45705) | 45705..46397 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| K9U09_RS23700 (46394) | 46394..46741 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| K9U09_RS23705 (46759) | 46759..50526 | - | 3768 | WP_001579768.1 | DUF5710 domain-containing protein | - |
| K9U09_RS23710 (50616) | 50616..51167 | - | 552 | WP_000014584.1 | Phospholipase D | VF |
| K9U09_RS23715 (51182) | 51182..51472 | - | 291 | WP_001372180.1 | hypothetical protein | - |
| K9U09_RS23720 (51469) | 51469..52617 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| K9U09_RS23725 (52614) | 52614..53432 | - | 819 | WP_000646097.1 | hypothetical protein | VF |
| K9U09_RS23730 (53429) | 53429..53887 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| K9U09_RS23735 (54282) | 54282..54866 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| K9U09_RS23740 (54926) | 54926..56128 | - | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| K9U09_RS23745 (56214) | 56214..57038 | - | 825 | WP_001238929.1 | conjugal transfer protein TraE | - |
| K9U09_RS23750 (57189) | 57189..58343 | - | 1155 | WP_001139958.1 | site-specific integrase | - |
| K9U09_RS23755 (58342) | 58342..58695 | + | 354 | WP_001393368.1 | hypothetical protein | - |
| K9U09_RS23760 (59864) | 59864..60112 | + | 249 | WP_001349157.1 | hypothetical protein | - |
| K9U09_RS23765 (60109) | 60109..61401 | - | 1293 | WP_001417545.1 | hypothetical protein | VF |
| K9U09_RS23770 (61401) | 61401..62057 | - | 657 | WP_001193553.1 | hypothetical protein | VF |
| K9U09_RS23775 (62042) | 62042..62602 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| K9U09_RS23780 (62612) | 62612..63226 | - | 615 | WP_000959786.1 | hypothetical protein | VF |
| K9U09_RS23785 (63244) | 63244..64341 | - | 1098 | WP_228596884.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| K9U09_RS23790 (64354) | 64354..65907 | - | 1554 | WP_000362202.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| K9U09_RS23795 (65918) | 65918..66370 | - | 453 | WP_001247334.1 | hypothetical protein | VF |
| K9U09_RS23800 (66357) | 66357..67652 | - | 1296 | WP_000752772.1 | hypothetical protein | VF |
| K9U09_RS23805 (67645) | 67645..69327 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| K9U09_RS23810 (69341) | 69341..69778 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| K9U09_RS23815 (69778) | 69778..70845 | - | 1068 | WP_228596865.1 | hypothetical protein | VF |
| K9U09_RS23820 (71469) | 71469..71765 | - | 297 | WP_000494779.1 | hypothetical protein | - |
| K9U09_RS23825 (71941) | 71941..72195 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| K9U09_RS23830 (72357) | 72357..72908 | - | 552 | WP_000744644.1 | hypothetical protein | - |
| K9U09_RS23835 (73081) | 73081..73764 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| K9U09_RS23840 (74018) | 74018..74551 | - | 534 | WP_001372168.1 | transcription termination/antitermination NusG family protein | - |
| K9U09_RS23845 (74993) | 74993..75280 | - | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| K9U09_RS23850 (75318) | 75318..75476 | - | 159 | Protein_84 | ash family protein | - |
| K9U09_RS23855 (76434) | 76434..77465 | + | 1032 | WP_000907866.1 | plasmid replication initiator RepA | - |
| K9U09_RS23860 (78163) | 78163..78378 | + | 216 | WP_000841013.1 | hypothetical protein | - |
| K9U09_RS23865 (78375) | 78375..79367 | + | 993 | WP_228596868.1 | hypothetical protein | - |
| K9U09_RS23870 (79426) | 79426..80043 | - | 618 | WP_228596869.1 | ProQ/FINO family protein | - |
| K9U09_RS23875 (80238) | 80238..81794 | - | 1557 | WP_001579759.1 | AAA family ATPase | - |
| K9U09_RS23880 (82059) | 82059..82649 | - | 591 | WP_000194568.1 | hypothetical protein | - |
| K9U09_RS23885 (82649) | 82649..82906 | - | 258 | WP_000371888.1 | hypothetical protein | - |
| K9U09_RS23890 (83235) | 83235..84338 | + | 1104 | WP_001127573.1 | nucleotide-binding protein | - |
| K9U09_RS23895 (84368) | 84368..85528 | + | 1161 | WP_064148452.1 | DUF4238 domain-containing protein | - |
| K9U09_RS23900 (85540) | 85540..86244 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| K9U09_RS23905 (86299) | 86299..86556 | + | 258 | Protein_95 | hypothetical protein | - |
| K9U09_RS23910 (86702) | 86702..87565 | + | 864 | WP_000612791.1 | SDR family oxidoreductase | - |
| K9U09_RS23915 (87603) | 87603..87848 | + | 246 | WP_001354008.1 | GrpB family protein | - |
| K9U09_RS23920 (88317) | 88317..89108 | + | 792 | WP_228596871.1 | Dihydropteroate synthase | ARG |
| K9U09_RS23925 (89111) | 89111..89386 | - | 276 | WP_109023896.1 | hypothetical protein | - |
| K9U09_RS23930 (89409) | 89409..90041 | + | 633 | WP_020802982.1 | IS256 family transposase IS406 | Transposase |
| K9U09_RS23935 (90288) | 90288..90620 | - | 333 | WP_000800531.1 | quaternary ammonium compound efflux SMR transporter QacL | - |
| K9U09_RS23940 (90743) | 90743..91581 | - | 839 | Protein_102 | Streptomycin 3''-adenylyltransferase | ARG |
| K9U09_RS23945 (91670) | 91670..92149 | - | 480 | WP_233781805.1 | alpha/beta fold hydrolase | - |
| K9U09_RS23950 (92179) | 92179..92562 | - | 384 | WP_228596875.1 | hypothetical protein | - |
| K9U09_RS23955 (92979) | 92979..94472 | - | 1494 | WP_015344975.1 | IS91 family transposase ISVsa3 | Transposase |
| K9U09_RS23960 (94584) | 94584..94889 | - | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| K9U09_RS23965 (94917) | 94917..96131 | - | 1215 | WP_000214122.1 | Bicyclomycin resistance protein | ARG |
| K9U09_RS23970 (96348) | 96348..97232 | - | 885 | WP_001447541.1 | DUF3363 domain-containing protein | - |
| K9U09_RS23975 (97263) | 97263..97769 | - | 507 | Protein_109 | transposase | - |
| K9U09_RS23980 (97834) | 97834..98538 | + | 705 | WP_001067848.1 | IS6-like element IS26 family transposase | - |
| K9U09_RS23985 (98585) | 98585..101449 | + | 2865 | Protein_111 | Tn3 family transposase TnpA_Tn3 | Transposase |
| K9U09_RS23990 (101540) | 101540..101854 | + | 315 | WP_162997154.1 | restriction endonuclease | - |
| K9U09_RS23995 (101859) | 101859..102056 | + | 198 | WP_000844102.1 | hypothetical protein | - |
| K9U09_RS24000 (102118) | 102118..102822 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| K9U09_RS24005 (102975) | 102975..103796 | - | 822 | WP_000939727.1 | hypothetical protein | ARG |
| K9U09_RS24010 (103881) | 103881..104719 | - | 839 | Protein_116 | Streptomycin 3''-adenylyltransferase | ARG |
| K9U09_RS24015 (104865) | 104865..105662 | + | 798 | Protein_117 | IS91 family transposase ISAzo26 | Transposase |
| K9U09_RS24020 (105765) | 105765..106469 | - | 705 | WP_001067858.1 | Tn3 family transposase ISKox2 | Transposase |
| K9U09_RS24025 (106530) | 106530..108224 | + | 1695 | Protein_119 | Tn3 family transposase ISKox2 | Transposase |
| K9U09_RS24030 (108330) | 108330..109190 | + | 861 | WP_000557454.1 | SPBc2 prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD | ARG |
| K9U09_RS24035 (109203) | 109203..109745 | + | 543 | WP_000587837.1 | AAA family ATPase | - |
| K9U09_RS24040 (110227) | 110227..110418 | - | 192 | WP_000951934.1 | hypothetical protein | - |
| K9U09_RS24045 (110442) | 110442..110669 | + | 228 | WP_000248278.1 | hypothetical protein | - |
| K9U09_RS24050 (110720) | 110720..111496 | + | 777 | Protein_124 | hypothetical protein | - |
| K9U09_RS24055 (111561) | 111561..112265 | + | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| K9U09_RS24060 (112319) | 112319..112726 | - | 408 | Protein_126 | proQ/FINO family protein | - |
| K9U09_RS24065 (112918) | 112918..114474 | - | 1557 | WP_000818556.1 | AAA family ATPase | - |
| K9U09_RS24070 (114737) | 114737..115327 | - | 591 | WP_000194575.1 | hypothetical protein | - |
| K9U09_RS24075 (115327) | 115327..115584 | - | 258 | WP_000343085.1 | hypothetical protein | - |
| K9U09_RS24080 (115938) | 115938..118076 | + | 2139 | WP_000350638.1 | AAA family ATPase | - |
| K9U09_RS24085 (118238) | 118238..118654 | - | 417 | WP_001044768.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| K9U09_RS24090 (118651) | 118651..118881 | - | 231 | WP_001261287.1 | type II toxin-antitoxin system VapB family antitoxin | - |
| K9U09_RS24095 (119177) | 119177..119467 | + | 291 | WP_000111771.1 | hypothetical protein | - |
| K9U09_RS24100 (119457) | 119457..120356 | + | 900 | WP_000963206.1 | nucleotide-binding protein | - |
| K9U09_RS24105 (120406) | 120406..122631 | - | 2226 | WP_000698737.1 | P-loop NTPase fold protein | - |
| K9U09_RS24110 (122633) | 122633..123721 | - | 1089 | WP_000952217.1 | transcriptional repressor PifC | - |
| K9U09_RS24115 (124273) | 124273..124623 | + | 351 | WP_000493380.1 | hypothetical protein | - |
| K9U09_RS24120 (124693) | 124693..125301 | + | 609 | WP_000715519.1 | hypothetical protein | - |
| K9U09_RS24125 (125369) | 125369..126151 | + | 783 | WP_001372173.1 | site-specific integrase | - |
| K9U09_RS24130 (126289) | 126289..126564 | - | 276 | WP_000239529.1 | hypothetical protein | - |
| K9U09_RS24135 (126558) | 126558..127202 | - | 645 | WP_000633913.1 | division plane positioning ATPase MipZ | - |
| K9U09_RS24140 (127431) | 127431..128402 | + | 972 | WP_001103690.1 | plasmid segregation protein ParM | - |
| K9U09_RS24145 (128407) | 128407..128799 | + | 393 | WP_000340829.1 | plasmid partitioning/stability family protein | - |
| K9U09_RS24150 (128804) | 128804..130075 | - | 1272 | WP_000457523.1 | Y-family DNA polymerase | - |
| K9U09_RS24155 (130075) | 130075..130512 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| K9U09_RS24160 (130509) | 130509..130757 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|