MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 93070 bp
Accession: NZ_CP082922 Location: 3797178..3890247 Organism: Nocardioides rotundus strain MCCC 1A10561 Replicon: chromosome
Accession: NZ_CP082922 Location: 3797178..3890247 Organism: Nocardioides rotundus strain MCCC 1A10561 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K8W59_RS18610 (K8W59_18660) | 3792301..3792723 | - | 423 | WP_223396487.1 | PIN domain-containing protein | - |
| K8W59_RS18615 (K8W59_18665) | 3792723..3792977 | - | 255 | WP_223396488.1 | hypothetical protein | - |
| K8W59_RS18620 (K8W59_18670) | 3793058..3793606 | - | 549 | WP_223396489.1 | NAD(P)H-dependent oxidoreductase | - |
| K8W59_RS18625 (K8W59_18675) | 3793725..3794927 | - | 1203 | WP_223396490.1 | HNH endonuclease signature motif containing protein | - |
| K8W59_RS18630 (K8W59_18680) | 3795277..3795747 | + | 471 | Protein_3664 | chloramphenicol phosphotransferase CPT family protein | - |
| K8W59_RS18635 (K8W59_18685) | 3795874..3797316 | - | 1443 | WP_223396491.1 | aldehyde dehydrogenase | - |
| K8W59_RS18640 (K8W59_18690) | 3797439..3798335 | + | 897 | WP_223396492.1 | Transcriptional activator NphR | VF |
| K8W59_RS18645 (K8W59_18695) | 3798342..3798737 | - | 396 | WP_223396493.1 | type II toxin-antitoxin system VapC family toxin | - |
| K8W59_RS18650 (K8W59_18700) | 3798734..3799003 | - | 270 | WP_223396494.1 | type II toxin-antitoxin system VapB family antitoxin | - |
| K8W59_RS18655 (K8W59_18705) | 3799045..3799707 | + | 663 | WP_223396495.1 | VOC family protein | - |
| K8W59_RS18660 (K8W59_18710) | 3799711..3800070 | - | 360 | WP_223396496.1 | TraR/DksA C4-type zinc finger protein | - |
| K8W59_RS18665 (K8W59_18715) | 3800111..3800503 | - | 393 | WP_223396497.1 | DUF4186 domain-containing protein | - |
| K8W59_RS18670 (K8W59_18720) | 3800722..3802818 | + | 2097 | WP_223399920.1 | carbon starvation CstA family protein | - |
| K8W59_RS18675 (K8W59_18725) | 3802818..3803036 | + | 219 | WP_223396498.1 | YbdD/YjiX family protein | - |
| K8W59_RS18680 (K8W59_18730) | 3803050..3803448 | - | 399 | WP_223396499.1 | PIN domain nuclease | Toxin Detail |
| K8W59_RS18685 (K8W59_18735) | 3803445..3803657 | - | 213 | WP_223396500.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| K8W59_RS18690 (K8W59_18740) | 3803887..3805308 | + | 1422 | WP_223396501.1 | class I SAM-dependent methyltransferase | - |
| K8W59_RS18695 (K8W59_18745) | 3805466..3805861 | - | 396 | WP_223396502.1 | SRPBCC family protein | - |
| K8W59_RS18700 (K8W59_18750) | 3805936..3806148 | + | 213 | WP_223396503.1 | antitoxin | - |
| K8W59_RS18705 (K8W59_18755) | 3806152..3806589 | + | 438 | WP_223396504.1 | SRPBCC family protein | - |
| K8W59_RS18710 (K8W59_18760) | 3806591..3807622 | - | 1032 | WP_223396505.1 | TerC/Alx family metal homeostasis membrane protein | - |
| K8W59_RS18715 (K8W59_18765) | 3807773..3808375 | - | 603 | WP_223396506.1 | isoprenylcysteine carboxylmethyltransferase family protein | - |
| K8W59_RS18720 (K8W59_18770) | 3808545..3809225 | - | 681 | WP_223396507.1 | type 1 glutamine amidotransferase domain-containing protein | - |
| K8W59_RS18725 (K8W59_18775) | 3809236..3810207 | - | 972 | WP_223396508.1 | alpha/beta hydrolase | - |
| K8W59_RS18730 (K8W59_18780) | 3810359..3810919 | + | 561 | WP_223396509.1 | TetR-like C-terminal domain-containing protein | - |
| K8W59_RS18735 (K8W59_18785) | 3810992..3811912 | + | 921 | WP_223396510.1 | NAD-dependent epimerase/dehydratase family protein | - |
| K8W59_RS18740 (K8W59_18790) | 3812074..3812304 | + | 231 | WP_223396511.1 | hypothetical protein | Antitoxin Detail |
| K8W59_RS18745 (K8W59_18795) | 3812301..3812696 | + | 396 | WP_223396512.1 | PIN domain-containing protein | Toxin Detail |
| K8W59_RS18750 (K8W59_18800) | 3812700..3813653 | - | 954 | WP_223396513.1 | endonuclease/exonuclease/phosphatase family protein | - |
| K8W59_RS18755 (K8W59_18805) | 3813870..3815087 | + | 1218 | WP_223396514.1 | sensor histidine kinase | - |
| K8W59_RS18760 (K8W59_18810) | 3815084..3815749 | + | 666 | WP_223396515.1 | Transcriptional regulatory protein LiaR | VF |
| K8W59_RS18765 (K8W59_18815) | 3815828..3816664 | + | 837 | WP_223396516.1 | alpha/beta hydrolase | - |
| K8W59_RS18770 (K8W59_18820) | 3816661..3817218 | + | 558 | WP_223396517.1 | Daunorubicin/doxorubicin resistance ATP-binding protein DrrA | VF |
| K8W59_RS18775 (K8W59_18825) | 3817309..3817620 | + | 312 | WP_223396518.1 | hypothetical protein | - |
| K8W59_RS18780 (K8W59_18830) | 3817657..3819810 | - | 2154 | WP_223396519.1 | AAA family ATPase | - |
| K8W59_RS18785 (K8W59_18835) | 3819864..3820166 | + | 303 | WP_223396339.1 | IS3 family transposase ISStau1 | Transposase |
| K8W59_RS18790 (K8W59_18840) | 3820163..3821059 | + | 897 | WP_223396520.1 | IS3 family transposase ISAzvi9 | Transposase |
| K8W59_RS18795 (K8W59_18845) | 3821142..3822251 | + | 1110 | WP_223396521.1 | IS110 family transposase ISEc21 | Transposase |
| K8W59_RS18800 (K8W59_18850) | 3822256..3822477 | + | 222 | WP_223396522.1 | integrase core domain-containing protein | - |
| K8W59_RS18805 (K8W59_18855) | 3822856..3823821 | - | 966 | Protein_3699 | relaxase domain-containing protein | - |
| K8W59_RS18815 | 3824381..3824734 | + | 354 | WP_223399929.1 | 4'-phosphopantetheinyl transferase superfamily protein | - |
| K8W59_RS18820 (K8W59_18865) | 3824738..3825286 | - | 549 | WP_223396523.1 | hypothetical protein | - |
| K8W59_RS18825 (K8W59_18870) | 3825539..3826165 | - | 627 | WP_223396524.1 | hypothetical protein | - |
| K8W59_RS18830 (K8W59_18875) | 3826162..3827793 | - | 1632 | WP_223396525.1 | acyl-CoA dehydrogenase family protein | - |
| K8W59_RS18835 (K8W59_18880) | 3827790..3828812 | - | 1023 | WP_223396526.1 | methyltransferase | - |
| K8W59_RS18840 (K8W59_18885) | 3828809..3829576 | - | 768 | WP_223396527.1 | hypothetical protein | - |
| K8W59_RS18845 (K8W59_18890) | 3829573..3830349 | - | 777 | WP_223396528.1 | hypothetical protein | - |
| K8W59_RS18850 (K8W59_18895) | 3830346..3833294 | - | 2949 | WP_223399939.1 | Linear gramicidin synthase subunit D | VF |
| K8W59_RS18855 (K8W59_18900) | 3833839..3835005 | - | 1167 | WP_223396529.1 | FAD/NAD(P)-binding oxidoreductase | - |
| K8W59_RS18860 (K8W59_18905) | 3835002..3835619 | - | 618 | WP_223396530.1 | TetR/AcrR family transcriptional regulator | - |
| K8W59_RS18865 (K8W59_18910) | 3835734..3837050 | + | 1317 | WP_223396531.1 | MFS transporter | - |
| K8W59_RS18870 (K8W59_18915) | 3837212..3838771 | + | 1560 | WP_223396532.1 | MFS transporter | - |
| K8W59_RS18875 (K8W59_18920) | 3838834..3839043 | + | 210 | WP_223396533.1 | heavy-metal-associated domain-containing protein | - |
| K8W59_RS18880 (K8W59_18925) | 3839045..3840100 | + | 1056 | WP_223396534.1 | heavy-metal-associated domain-containing protein | - |
| K8W59_RS18885 (K8W59_18930) | 3840090..3842414 | + | 2325 | WP_223396535.1 | Copper-exporting P-type ATPase | VF |
| K8W59_RS18890 (K8W59_18935) | 3842452..3842724 | + | 273 | WP_223396536.1 | YHS domain-containing protein | - |
| K8W59_RS18895 (K8W59_18940) | 3842800..3843201 | - | 402 | WP_223396537.1 | hypothetical protein | - |
| K8W59_RS18900 (K8W59_18945) | 3843214..3845196 | + | 1983 | WP_263283265.1 | heavy metal translocating P-type ATPase | - |
| K8W59_RS18905 (K8W59_18950) | 3845246..3845560 | + | 315 | WP_223396539.1 | metal-sensitive transcriptional regulator | - |
| K8W59_RS18910 (K8W59_18955) | 3845921..3846835 | + | 915 | WP_223396540.1 | zinc ABC transporter substrate-binding protein | - |
| K8W59_RS18915 (K8W59_18960) | 3846832..3847680 | + | 849 | WP_223396541.1 | ATP-binding cassette domain-containing protein | - |
| K8W59_RS18920 (K8W59_18965) | 3847689..3848585 | + | 897 | WP_223399941.1 | metal ABC transporter permease | - |
| K8W59_RS18925 (K8W59_18970) | 3848606..3848935 | + | 330 | WP_223396542.1 | YHS domain-containing protein | - |
| K8W59_RS18930 (K8W59_18975) | 3849027..3849545 | + | 519 | WP_223399949.1 | DUF6153 family protein | - |
| K8W59_RS18935 (K8W59_18980) | 3849666..3850283 | + | 618 | WP_223396543.1 | DUF305 domain-containing protein | - |
| K8W59_RS18940 (K8W59_18985) | 3850505..3850774 | + | 270 | WP_223396544.1 | hypothetical protein | - |
| K8W59_RS18945 (K8W59_18990) | 3850778..3851314 | + | 537 | WP_223396545.1 | hypothetical protein | - |
| K8W59_RS18950 (K8W59_18995) | 3851359..3853863 | + | 2505 | WP_223399951.1 | heavy metal translocating P-type ATPase | - |
| K8W59_RS18955 (K8W59_19000) | 3853860..3855347 | + | 1488 | WP_223396546.1 | multicopper oxidase family protein | - |
| K8W59_RS18960 (K8W59_19005) | 3855307..3855597 | + | 291 | WP_223396547.1 | IS3 family transposase ISStau1 | Transposase |
| K8W59_RS18965 (K8W59_19010) | 3855594..3856544 | + | 951 | WP_223396340.1 | IS3 family transposase ISAzvi9 | Transposase |
| K8W59_RS18970 (K8W59_19015) | 3856584..3856727 | + | 144 | Protein_3731 | multicopper oxidase domain-containing protein | - |
| K8W59_RS18975 (K8W59_19020) | 3856814..3857710 | + | 897 | WP_223396548.1 | AraC family transcriptional regulator | - |
| K8W59_RS18980 (K8W59_19025) | 3857942..3858910 | + | 969 | WP_223396549.1 | bifunctional DNA primase/polymerase | - |
| K8W59_RS18985 (K8W59_19030) | 3858940..3859548 | + | 609 | WP_223396550.1 | DUF2637 domain-containing protein | - |
| K8W59_RS18990 (K8W59_19035) | 3859545..3860000 | + | 456 | WP_223396551.1 | hypothetical protein | - |
| K8W59_RS18995 (K8W59_19040) | 3860093..3860965 | + | 873 | WP_223396552.1 | hypothetical protein | - |
| K8W59_RS19000 (K8W59_19045) | 3860965..3861972 | + | 1008 | WP_223396553.1 | ParB N-terminal domain-containing protein | - |
| K8W59_RS19005 (K8W59_19050) | 3862004..3862738 | + | 735 | WP_223396554.1 | hypothetical protein | - |
| K8W59_RS19010 (K8W59_19055) | 3862755..3864407 | + | 1653 | WP_223396555.1 | M23 family metallopeptidase | - |
| K8W59_RS19015 (K8W59_19060) | 3864586..3865707 | + | 1122 | WP_017883429.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| K8W59_RS19020 (K8W59_19065) | 3865713..3866054 | + | 342 | WP_017883430.1 | helix-turn-helix transcriptional regulator | - |
| K8W59_RS19025 (K8W59_19070) | 3866063..3867730 | + | 1668 | WP_031289818.1 | hypothetical protein | - |
| K8W59_RS19030 (K8W59_19075) | 3867777..3868289 | - | 513 | WP_223396556.1 | hypothetical protein | - |
| K8W59_RS19035 (K8W59_19080) | 3868428..3868694 | + | 267 | WP_223396557.1 | DUF6112 family protein | - |
| K8W59_RS19040 (K8W59_19085) | 3868817..3869086 | + | 270 | WP_223396558.1 | DUF6112 family protein | - |
| K8W59_RS19045 (K8W59_19090) | 3869120..3870466 | + | 1347 | WP_223396559.1 | conjugal transfer protein TrbL | - |
| K8W59_RS19050 (K8W59_19095) | 3870473..3871948 | + | 1476 | WP_223396560.1 | PrgI family protein | - |
| K8W59_RS19055 (K8W59_19100) | 3872004..3872813 | + | 810 | WP_223396561.1 | hypothetical protein | - |
| K8W59_RS19060 (K8W59_19105) | 3872810..3874291 | + | 1482 | WP_223396562.1 | ATP-binding protein | - |
| K8W59_RS19065 (K8W59_19110) | 3874430..3875050 | + | 621 | WP_223396563.1 | hypothetical protein | - |
| K8W59_RS19070 (K8W59_19115) | 3875084..3875536 | + | 453 | WP_223396564.1 | hypothetical protein | - |
| K8W59_RS19075 (K8W59_19120) | 3875615..3876085 | + | 471 | WP_223399963.1 | hypothetical protein | - |
| K8W59_RS19080 (K8W59_19125) | 3876082..3877878 | + | 1797 | WP_223396565.1 | TraM recognition domain-containing protein | - |
| K8W59_RS19085 (K8W59_19130) | 3878337..3880448 | - | 2112 | WP_223396566.1 | hypothetical protein | - |
| K8W59_RS19090 (K8W59_19135) | 3880445..3881137 | - | 693 | WP_223396567.1 | ATP-binding protein | - |
| K8W59_RS19095 (K8W59_19140) | 3881141..3881947 | + | 807 | WP_223396568.1 | DUF488 family protein | - |
| K8W59_RS19100 (K8W59_19145) | 3881944..3882795 | - | 852 | WP_223396569.1 | hypothetical protein | - |
| K8W59_RS19105 (K8W59_19150) | 3883038..3884030 | + | 993 | WP_223396570.1 | hypothetical protein | - |
| K8W59_RS19110 (K8W59_19155) | 3884046..3884573 | + | 528 | WP_223396571.1 | hypothetical protein | - |
| K8W59_RS19115 (K8W59_19160) | 3884576..3885658 | - | 1083 | WP_223396572.1 | hypothetical protein | - |
| K8W59_RS19120 (K8W59_19165) | 3885661..3887874 | - | 2214 | WP_223396573.1 | AAA family ATPase | - |
| K8W59_RS19125 (K8W59_19170) | 3887975..3888436 | - | 462 | WP_223396574.1 | hypothetical protein | - |
| K8W59_RS19130 (K8W59_19175) | 3888588..3888920 | - | 333 | WP_223396575.1 | hypothetical protein | - |
| K8W59_RS19135 (K8W59_19180) | 3888917..3889153 | - | 237 | WP_223396576.1 | hypothetical protein | - |
| K8W59_RS19140 (K8W59_19185) | 3889150..3890428 | - | 1279 | Protein_3765 | IS3 family transposase | - |
| K8W59_RS19145 (K8W59_19190) | 3890934..3891377 | + | 444 | WP_223396577.1 | protein phosphatase | - |
| K8W59_RS19150 (K8W59_19195) | 3891497..3892105 | - | 609 | WP_223396578.1 | hypothetical protein | - |
| K8W59_RS19155 (K8W59_19200) | 3892120..3892419 | - | 300 | WP_223396579.1 | DUF4235 domain-containing protein | - |
| K8W59_RS19160 (K8W59_19205) | 3892459..3893538 | - | 1080 | WP_223396580.1 | YihY/virulence factor BrkB family protein | - |
| K8W59_RS19165 (K8W59_19210) | 3893535..3893882 | - | 348 | WP_223396581.1 | DUF3618 domain-containing protein | - |
| K8W59_RS19170 (K8W59_19215) | 3893879..3894316 | - | 438 | WP_223396582.1 | phage holin family protein | - |
| K8W59_RS19175 (K8W59_19220) | 3894313..3894552 | - | 240 | WP_223396583.1 | YtxH domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|