MGE detailed information
MGE type: Genomic_island MGE length: 11356 bp
Accession: NZ_CP082916 Location: 3099532..3110887 Organism: Salmonella enterica subsp. enterica serovar Newlands strain ZC-S1 3rd Replicon: chromosome
Accession: NZ_CP082916 Location: 3099532..3110887 Organism: Salmonella enterica subsp. enterica serovar Newlands strain ZC-S1 3rd Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K8862_RS15010 (3094978) | 3094978..3096076 | + | 1099 | WP_096059418.1 | peptide chain release factor 2 | - |
| K8862_RS15015 (3096086) | 3096086..3097603 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| K8862_RS15020 (3097679) | 3097679..3098224 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| K8862_RS15025 (3098489) | 3098489..3099247 | + | 759 | WP_000244328.1 | amidase activator ActS | - |
| K8862_RS15035 (3099532) | 3099532..3100338 | - | 807 | WP_001574939.1 | DUF1460 domain-containing protein | - |
| K8862_RS15040 (3100618) | 3100618..3100869 | - | 252 | WP_001576352.1 | hypothetical protein | - |
| K8862_RS15045 (3101078) | 3101078..3101305 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| K8862_RS15050 (3101305) | 3101305..3101703 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| K8862_RS15055 (3102511) | 3102511..3103047 | + | 537 | WP_001038502.1 | STM3031 family outer membrane protein | - |
| K8862_RS15060 (3103094) | 3103094..3103726 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| K8862_RS15065 (3104445) | 3104445..3105026 | + | 582 | WP_001244651.1 | fimbrial protein | - |
| K8862_RS15070 (3105146) | 3105146..3107629 | + | 2484 | WP_000705505.1 | fimbrial outer membrane usher protein StdB | - |
| K8862_RS15075 (3107670) | 3107670..3108413 | + | 744 | WP_000798504.1 | fimbrial biogenesis chaperone StdC | - |
| K8862_RS15080 (3108410) | 3108410..3109486 | + | 1077 | WP_000141330.1 | hypothetical protein | - |
| K8862_RS15085 (3109630) | 3109630..3110142 | + | 513 | WP_000336257.1 | CaiF/GrlA family transcriptional regulator | - |
| K8862_RS15090 (3110129) | 3110129..3110887 | + | 759 | WP_000134802.1 | transcriptional regulator | - |
| K8862_RS15095 (3111097) | 3111097..3111945 | - | 849 | WP_000503687.1 | nickel/cobalt efflux protein RcnA | - |
| K8862_RS15100 (3112067) | 3112067..3112339 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| K8862_RS15105 (3112370) | 3112370..3113599 | - | 1230 | WP_000036838.1 | amino acid permease | - |
| K8862_RS15110 (3113741) | 3113741..3114196 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| K8862_RS15115 (3114300) | 3114300..3115163 | + | 864 | WP_001270774.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0.009 |