MGE detailed information
MGE type: Prophage MGE length: 23041 bp
Accession: NZ_CP079735 Location: 2227908..2250948 Organism: Escherichia coli strain GB2005 Replicon: chromosome
Accession: NZ_CP079735 Location: 2227908..2250948 Organism: Escherichia coli strain GB2005 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KYX12_RS10715 (2223159) | 2223159..2223869 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| KYX12_RS10720 (2223872) | 2223872..2224432 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| KYX12_RS10725 (2224467) | 2224467..2224808 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| KYX12_RS10730 (2224943) | 2224943..2225269 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| KYX12_RS10735 (2225475) | 2225475..2226689 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| KYX12_RS10740 (2226701) | 2226701..2227720 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| KYX12_RS10745 (2227908) | 2227908..2228765 | - | 858 | Protein_2101 | Tyrosine recombinase XerD ; Integrase | Integrase |
| KYX12_RS10750 (2228857) | 2228857..2230085 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| KYX12_RS10755 (2230096) | 2230096..2230401 | - | 306 | Protein_2103 | DUF3596 domain-containing protein | - |
| KYX12_RS10760 (2230415) | 2230415..2231110 | - | 696 | Protein_2104 | IS3 family transposase IS2 | Transposase |
| KYX12_RS10765 (2231107) | 2231107..2231874 | - | 768 | Protein_2105 | exonuclease | - |
| KYX12_RS10770 (2231967) | 2231967..2232158 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| KYX12_RS10775 (2232155) | 2232155..2232343 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| KYX12_RS10780 (2232911) | 2232911..2233129 | - | 219 | WP_001171942.1 | protein YdfC | - |
| KYX12_RS22200 (2233159) | 2233159..2233287 | - | 129 | WP_000344964.1 | protein YdfB | - |
| KYX12_RS10785 (2233289) | 2233289..2233444 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| KYX12_RS10790 (2233611) | 2233611..2234018 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| KYX12_RS10795 (2234102) | 2234102..2234332 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| KYX12_RS10800 (2234316) | 2234316..2234594 | + | 279 | Protein_2113 | hypothetical protein | - |
| KYX12_RS10805 (2234629) | 2234629..2234778 | + | 150 | WP_011443592.1 | protein YdfW | - |
| KYX12_RS10810 (2235215) | 2235215..2235547 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| KYX12_RS10815 (2235750) | 2235750..2236055 | - | 306 | WP_001326990.1 | protein YdfV | - |
| KYX12_RS10820 (2236080) | 2236080..2236319 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| KYX12_RS10825 (2236319) | 2236319..2236606 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| KYX12_RS10830 (2236678) | 2236678..2236833 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| KYX12_RS10835 (2237050) | 2237050..2237301 | + | 252 | WP_000980994.1 | protein Rem | - |
| KYX12_RS10840 (2237368) | 2237368..2237646 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| KYX12_RS10845 (2237648) | 2237648..2238697 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| KYX12_RS10850 (2238711) | 2238711..2239463 | + | 753 | WP_001047135.1 | antitermination protein | - |
| KYX12_RS10855 (2239741) | 2239741..2239830 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| KYX12_RS10860 (2239885) | 2239885..2240097 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| KYX12_RS10865 (2240398) | 2240398..2240613 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| KYX12_RS10870 (2240977) | 2240977..2241147 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| KYX12_RS10875 (2241367) | 2241367..2241582 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| KYX12_RS10880 (2241587) | 2241587..2241898 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| KYX12_RS10885 (2241895) | 2241895..2242428 | + | 534 | WP_001092971.1 | lysozyme | - |
| KYX12_RS10890 (2242425) | 2242425..2242922 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| KYX12_RS10895 (2243285) | 2243285..2243497 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| KYX12_RS10900 (2243508) | 2243508..2243696 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| KYX12_RS10905 (2243699) | 2243699..2243764 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| KYX12_RS10910 (2243843) | 2243843..2243998 | + | 156 | WP_001309517.1 | protein YnfN | - |
| KYX12_RS10915 (2244170) | 2244170..2244343 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| KYX12_RS10920 (2244495) | 2244495..2244905 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| KYX12_RS10925 (2244963) | 2244963..2245196 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| KYX12_RS10930 (2245585) | 2245585..2246154 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| KYX12_RS10935 (2246105) | 2246105..2247067 | + | 963 | WP_001027733.1 | phage tail protein | - |
| KYX12_RS10940 (2247067) | 2247067..2247642 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| KYX12_RS10945 (2247739) | 2247739..2248328 | - | 590 | Protein_2142 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| KYX12_RS10950 (2248645) | 2248645..2248878 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| KYX12_RS10955 (2248947) | 2248947..2249060 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| KYX12_RS10960 (2249581) | 2249581..2250948 | + | 1368 | Protein_2145 | MHS family MFS transporter | - |
| KYX12_RS10965 (2251037) | 2251037..2252497 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| KYX12_RS10970 (2252532) | 2252532..2252735 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| KYX12_RS10975 (2252912) | 2252912..2253598 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| KYX12_RS10980 (2253687) | 2253687..2254433 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.002 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0 |